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MacroAPE 1083:RRCGAACC,motif176: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;808.108;52.136;631.218;370.538!2;718.732;1.862;809.97;331.436!3;1.862;1586.424;271.852;1.862!4;1.862;1.862;1856.414;1.862!5;1632.974;1.862;1...")
 
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0279!11759-123H4;0.155354!11761-123H6;0.249946!11842-124H6;0.470548!11837-124H1;0.236647!10568-108B1;0.320341!13230-141I8;0.562515!13231-141I9;0.185289!10696-109G3;0.153517!10493-107B7;0.321487!10494-107B8;0.84647!10850-111F4;0.780707!10851-111F5;0.374527!10852-111F6;0.387338!10853-111F7;0.0138786!10854-111F8;0.982979!10855-111F9;0.237097!10856-111G1;0.464171!10847-111F1;0.121176!10846-111E9;0.13289!10848-111F2;0.248025!10845-111E8;0.937959!10857-111G2;0.54979!10858-111G3;0.518235!10156-103A3;0.803869!11901-125F2;0.761655!11902-125F3;0.205407!11903-125F4;0.261425!10689-109F5;0.24641!10648-109A9;0.615546!10784-110H1;0.761481!10744-110C6;0.500825!10772-110F7;0.316815!10474-106I6;0.760696!10600-108E6;0.305738!10684-109E9;0.973891!12226-129F3;0.44787!12227-129F4;0.790532!10508-107D4;0.813353!10539-107G8;0.00474977!10607-108F4;0.00880459!10555-107I6;0.0675647!10774-110F9;0.00237079!10637-108I7;0.312259!10663-109C6;0.539567!10728-110A8;0.30395!10729-110A9;0.457204!10430-106D7;0.11073!10730-110B1;0.818592!10813-111B3;0.0163575!10812-111B2;0.221437!10037-101F1;0.552856!10172-103C1;0.588904!10163-103B1;0.409746!10076-102A4;0.804646!10073-102A1;0.48698!10036-101E9;0.0984826!10195-103E6;0.495831!10277-104E7;0.525546!10434-106E2;0.927015!10550-107I1;0.582494!10545-107H5;0.624393!10544-107H4;0.820233!10704-109H2;0.561026!10510-107D6;0.10882!10558-107I9;0.936749!10020-101D2;0.574735!10732-110B3;0.868818!10049-101G4;0.200436!10698-109G5;0.661691!10437-106E5;0.359213!10417-106C3;0.69541!10035-101E8;0.263483!10171-103B9;0.542767!10157-103A4;0.321474!10034-101E7;0.630975!10072-101I9;0.489591!10199-103F1;0.122385!10200-103F2;0.341112!10697-109G4;0.817632!10723-110A3;0.118481!10179-103C8;0.449779!10160-103A7;0.282532!10180-103C9;0.287364!10162-103A9;0.449193!10021-101D3;0.896991!10840-111E3;0.907706!10706-109H4;0.23777!10033-101E6;0.25843!10032-101E5;0.529244!10490-107B4;0.540271!10439-106E7;0.937899!10022-101D4;0.977187!10176-103C5;0.885288!10469-106I1;0.417062!10067-101I4;0.784819!10411-106B6;0.850338!10471-106I3;0.865644!10030-101E3;0.365233!10475-106I7;0.604372!10787-110H4;0.12276!10477-106I9;0.787221!10695-109G2;0.393478!11771-123I7;0.450912!11772-123I8;0.188443!11773-123I9;0.439575!10093-102C3;0.0477027!10442-106F1;0.883794!10442-106F1;0.341478!10201-103F3;0.307694!10639-108I9;0.802038!11843-124H7;0.838648!11841-124H5;0.725386!10693-109F9;0.415466!10436-106E4;0.523051!10483-107A6;0.96818!10282-104F3;0.968986!10023-101D5;0.606653!10066-101I3;0.9851!10065-101I2;0.824925!10800-110I8;0.923012!10610-108F7;0.668096!10841-111E4;0.164763!10541-107H1;0.167945!10842-111E5;0.297009!10562-108A4;0.0202254!10024-101D6;0.401417!10064-101I1;0.607405!10609-108F6;0.876146!10048-101G3;0.421515!10781-110G7;0.9022!10181-103D1;0.169544!10159-103A6;0.737466!10056-101H2;0.96343!10737-110B8;0.726039!10025-101D7;0.296069!10044-101F8;0.0125013!10424-106D1;0.187292!10463-106H4;0.296294!10616-108G4;0.527521!10486-107A9;0.717422!10062-101H8;0.755825!10202-103F4;0.723526!10158-103A5;0.559931!10441-106E9;0.936587!10031-101E4;0.283334!10063-101H9;0.516221!10063-101H9;0.124002!11763-123H8;0.947144!11765-123I1;0.360327!11768-123I4;0.351023!10807-111A6;0.112248!10790-110H7;0.140286!10798-110I6;0.0715586!10786-110H3;0.18834!10591-108D6;0.186322!10593-108D8;0.14176!10590-108D5;0.299757!10026-101D8;0.113175!10096-102C6;0.680239!10168-103B6;0.053838!10154-103A1;0.65104!10209-103G2;0.900142!10061-101H7;0.961544!10027-101D9;0.839164!10043-101F7;0.11184!10783-110G9;0.0705033!10028-101E1;0.85879!10060-101H6;0.962589!10203-103F5;0.885021!10059-101H5;0.996099!10047-101G2;0.774102!10029-101E2;0.172837!10058-101H4;0.717771!10418-106C4;0.939419!10492-107B6;0.703281!10694-109G1;0.929596!10797-110I5;0.14217!10057-101H3;0.615051!10100-102D1;0.587156!10055-101H1;0.757406!10204-103F6;0.92238!10191-103E2;0.741939!10563-108A5;0.461667
|name=RRCGAACC,motif176,CNhs11997,T:1862.0(30.79%),B:17811.4(23.06%),P:1e-42
|name=RRCGAACC,motif176,CNhs11997,T:1862.0(30.79%),B:17811.4(23.06%),P:1e-42
|tomtom_result=OPI1#MA0349.1;-2;0.000303719;0.14457;0.28914;6;AGCGAACC;CGAACCG;+!IRF1#MA0050.1;3;0.00586204;2.79033;1;8;AGCGAACC;GAAAGCGAAACC;+!STAT1#MA0137.1;4;0.00922151;4.38944;1;8;AGCGAACC;GGAAAACGAAACTG;+!Deaf1#MA0185.1;0;0.0182133;8.66951;1;6;AGCGAACC;CACGAA;-!RXRA::VDR#MA0074.1;-2;0.0193644;9.21744;1;6;AGCGAACC;TGAACCCGATGACCC;-
}}
}}

Latest revision as of 13:47, 7 September 2012

Full Name: RRCGAACC,motif176,CNhs11997,T:1862.0(30.79%),B:17811.4(23.06%),P:1e-42

Motif matrix
POACGT
1808.10852.136631.218370.538
2718.7321.862809.97331.436
31.8621586.424271.8521.862
41.8621.8621856.4141.862
51632.9741.8621.862225.302
61856.4141.8621.8621.862
7573.4961227.0581.86259.584
81.8621038.996199.234621.908

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

OPI1#MA0349.1-20.0003037190.144570.289146AGCGAACCCGAACCG+
IRF1#MA0050.130.005862042.7903318AGCGAACCGAAAGCGAAACC+
STAT1#MA0137.140.009221514.3894418AGCGAACCGGAAAACGAAACTG+
Deaf1#MA0185.100.01821338.6695116AGCGAACCCACGAA-
RXRA::VDR#MA0074.1-20.01936449.2174416AGCGAACCTGAACCCGATGACCC-