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MacroAPE 1083:CTCF f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;280.5564199254187;890.0926431787442;420.4217047051987;1270.2371713144134!2;464.4796836864638;464.4744046828397;1268.3183710759745;664.035479...")
 
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9;0.869856!10788-110H5;0.000315239!10792-110H9;0.419747!10765-110E9;0.179736!10829-111D1;0.258752!10830-111D2;0.983474!10831-111D3;0.443877!10832-111D4;0.633214!10833-111D5;0.42856!10764-110E8;0.94191!10770-110F5;0.772931!10399-106A3;0.264718!10400-106A4;0.664503!10405-106A9;0.544548!10834-111D6;0.591838!10835-111D7;0.743461!10836-111D8;0.682033!10837-111D9;0.350022!10699-109G6;0.146177!10802-111A1;0.345877!10796-110I4;0.172956!10010-101C1;0.516311!10810-111A9;0.493881!10421-106C7;0.476922!10708-109H6;0.194191!12235-129G3;0.349429!12236-129G4;0.255046!12237-129G5;0.0879097!10167-103B5;0.240553!10151-102I7;0.895962!10428-106D5;0.827367!10795-110I3;0.643252!10805-111A4;0.690328!10052-101G7;0.959966!10189-103D9;0.726709!10589-108D4;0.565506!10425-106D2;0.758767!10427-106D4;0.0164396!10702-109G9;0.288265!10432-106D9;0.533186!10496-107C1;0.750755!10718-109I7;0.132711!10011-101C2;0.592583!10053-101G8;0.54858!10686-109F2;0.564839!10084-102B3;0.406478!10012-101C3;0.890902!10085-102B4;0.98983!10482-107A5;0.577932!10419-106C5;0.542798!10080-102A8;0.830665!10760-110E4;0.118351!10709-109H7;0.436489!10710-109H8;0.601981!10703-109H1;0.393375!10719-109I8;0.502194!10642-109A3;0.886201!10177-103C6;0.17614!10164-103B2;0.867942!10173-103C2;0.761044!10166-103B4;0.906011!10083-102B2;0.817799!10188-103D8;0.952065!10552-107I3;0.899894!10553-107I4;0.671793!10013-101C4;0.456197!10536-107G5;0.306734!10618-108G6;0.801472!10423-106C9;0.456367!10785-110H2;0.208405!12238-129G6;0.795854!12239-129G7;0.821284!12240-129G8;0.832029!10416-106C2;0.942214!10801-110I9;0.445465!10766-110F1;0.74433!10824-111C5;0.121017!10825-111C6;0.250666!10826-111C7;0.326281!10454-106G4;0.202129!10409-106B4;0.186901!10638-108I8;0.316607!10636-108I6;0.0173513!10513-107D9;0.743409!10420-106C6;0.479476!10082-102B1;0.551483!10014-101C5;0.310659!10070-101I7;0.835761!10452-106G2;0.791826!10453-106G3;0.455642!10449-106F8;0.406223!10042-101F6;0.391603!10069-101I6;0.377674!10193-103E4;0.718942!10631-108I1;0.845053!10438-106E6;0.506376!10488-107B2;0.8754!10196-103E7;0.78492!10071-101I8;0.530072!10071-101I8;0.903214!10041-101F5;0.697987!10451-106G1;0.353007!10450-106F9;0.568757!10604-108F1;0.909356!10605-108F2;0.935688!10606-108F3;0.462997!10603-108E9;0.97813!10497-107C2;0.773746!10448-106F7;0.0910942!10643-109A4;0.18541!10426-106D3;0.632499!10431-106D8;0.747957!10197-103E8;0.932405!10443-106F2;0.350561!10815-111B5;0.513494!10816-111B6;0.708822!10817-111B7;0.514116!10015-101C6;0.553701!10410-106B5;0.894178!10054-101G9;0.225424!10758-110E2;0.89912!10711-109H9;0.0755361!10040-101F4;0.53739!10470-106I2;0.999486!10415-106C1;0.877335!10198-103E9;0.0364!10614-108G2;0.789846!10612-108F9;0.161949!10549-107H9;0.342131!10615-108G3;0.768743!10487-107B1;0.641248!10433-106E1;0.821473!10688-109F4;0.690554!10444-106F3;0.211227!10444-106F3;0.201932!10485-107A8;0.179091!10413-106B8;0.0570872!10175-103C4;0.316243!10161-103A8;0.932349!12131-128D7;0.734066!10624-108H3;0.902705!10712-109I1;0.483776!10205-103F7;0.0917955!10206-103F8;0.693785!10207-103F9;0.553429!10050-101G5;0.802702!10051-101G6;0.90369!10016-101C7;0.448335!10046-101G1;0.81784!10778-110G4;0.622157!10633-108I3;0.392352!10818-111B8;0.789232!10819-111B9;0.371884!10820-111C1;0.377777!10484-107A7;0.378217!10808-111A7;0.224936!10169-103B7;0.411399!10153-102I9;0.95654!13425-144D5;0.846054!13433-144E4;0.583731!13437-144E8;0.595879!11904-125F5;0.458853!11905-125F6;0.569694!10039-101F3;0.0813771!10791-110H8;0.99878!10017-101C8;0.362865!10045-101F9;0.710838!10509-107D5;0.759385!10839-111E2;0.0362422!10692-109F8;0.624409!10079-102A7;0.172545!10078-102A6;0.758484!10721-110A1;0.75367!10569-108B2;0.791057!10570-108B3;0.759629!10571-108B4;0.67359!10647-109A8;0.842069!10752-110D5;0.52498!10782-110G8;0.161278!10726-110A6;0.76498!10018-101C9;0.0722317!10086-102B5;0.705293!10182-103D2;0.95008!10165-103B3;0.83247!10499-107C4;0.761532!10408-106B3;0.0165373!10019-101D1;0.676676!10068-101I5;0.646215!10075-102A3;0.338053!10077-102A5;0.841446!10727-110A7;0.955738!10775-110G1;0.577411!10412-106B7;0.194654!12231-129F8;0.153901!12232-129F9;0.260545!12233-129G1;0.0437085!12234-129G2;0.0582732!10414-106B9;0.271262!10170-103B8;0.98162!10183-103D3;0.766995!10150-102I6;0.820414!10174-103C3;0.955045!10155-103A2;0.531993!10038-101F2;0.516484!10838-111E1;0.732442!10759-110E3;0.683503!10514-107E1;0.207001!10465-106H6;0.246033!10691-109F7;0.940895!10843-111E6;0.256961!10844-111E7;0.312483!11747-123G1;0.331536!11748-123G2;0.750798!11749-123G3;0.860141!11750-123G4;0.96084!11751-123G5;0.697942!11840-124H4;0.595475!11752-123G6;0.515087!11753-123G7;0.755264!11754-123G8;0.550974!11755-123G9;0.990341!11756-123H1;0.625717!11833-124G6;0.90034!11760-123H5;0.612614!11836-124G9;0.819075!11758-123H3;0.958093!11835-124G8;0.643936!11762-123H7;0.335225!11838-124H2;0.465272!11757-123H2;0.531932!11759-123H4;0.636375!11761-123H6;0.721877!11842-124H6;0.978042!11837-124H1;0.413098!10568-108B1;0.592125!13230-141I8;0.279143!13231-141I9;0.598457!10696-109G3;0.657958!10493-107B7;0.822324!10494-107B8;0.561026!10850-111F4;0.46814!10851-111F5;0.72398!10852-111F6;0.499489!10853-111F7;0.304401!10854-111F8;0.0517511!10855-111F9;0.291511!10856-111G1;0.860517!10847-111F1;0.285389!10846-111E9;0.101958!10848-111F2;0.711856!10845-111E8;0.400741!10857-111G2;0.590538!10858-111G3;0.393405!10156-103A3;0.284995!11901-125F2;0.887395!11902-125F3;0.380443!11903-125F4;0.218466!10689-109F5;0.750754!10648-109A9;0.267972!10784-110H1;0.279067!10744-110C6;0.617885!10772-110F7;0.427381!10474-106I6;0.484032!10600-108E6;0.0587922!10684-109E9;0.401582!12226-129F3;0.354494!12227-129F4;0.530223!10508-107D4;0.41528!10539-107G8;0.718801!10607-108F4;0.699158!10555-107I6;0.659514!10774-110F9;0.614158!10637-108I7;0.982704!10663-109C6;0.990092!10728-110A8;0.95253!10729-110A9;0.842778!10430-106D7;0.649634!10730-110B1;0.519172!10813-111B3;0.590738!10812-111B2;0.78642!10037-101F1;0.842059!10172-103C1;0.959056!10163-103B1;0.867078!10076-102A4;0.927094!10073-102A1;0.919664!10036-101E9;0.708898!10195-103E6;0.894633!10277-104E7;0.972549!10434-106E2;0.792866!10550-107I1;0.38504!10545-107H5;0.411795!10544-107H4;0.538629!10704-109H2;0.643606!10510-107D6;0.239286!10558-107I9;0.696212!10020-101D2;0.752865!10732-110B3;0.206681!10049-101G4;0.895443!10698-109G5;0.387433!10437-106E5;0.438587!10417-106C3;0.593154!10035-101E8;0.777603!10171-103B9;0.848671!10157-103A4;0.817994!10034-101E7;0.952957!10072-101I9;0.916195!10199-103F1;0.772635!10200-103F2;0.66407!10697-109G4;0.567891!10723-110A3;0.213077!10179-103C8;0.401624!10160-103A7;0.736964!10180-103C9;0.564248!10162-103A9;0.864792!10021-101D3;0.673791!10840-111E3;0.589412!10706-109H4;0.214259!10033-101E6;0.874946!10032-101E5;0.973526!10490-107B4;0.894874!10439-106E7;0.816889!10022-101D4;0.515827!10176-103C5;0.725999!10469-106I1;0.945947!10067-101I4;0.810424!10411-106B6;0.690841!10471-106I3;0.25014!10030-101E3;0.603453!10475-106I7;0.692576!10787-110H4;0.922523!10477-106I9;0.659906!10695-109G2;0.924882!11771-123I7;0.721855!11772-123I8;0.0491469!11773-123I9;0.0808592!10093-102C3;0.0954273!10442-106F1;0.508861!10442-106F1;0.54588!10201-103F3;0.627283!10639-108I9;0.216172!11843-124H7;0.997409!11841-124H5;0.130686!10693-109F9;0.0858797!10436-106E4;0.132866!10483-107A6;0.832164!10282-104F3;0.650433!10023-101D5;0.438583!10066-101I3;0.846283!10065-101I2;0.764104!10800-110I8;0.36913!10610-108F7;0.393484!10841-111E4;0.851504!10541-107H1;0.832449!10842-111E5;0.622024!10562-108A4;0.998434!10024-101D6;0.571123!10064-101I1;0.503376!10609-108F6;0.572743!10048-101G3;0.139662!10781-110G7;0.723089!10181-103D1;0.528144!10159-103A6;0.681638!10056-101H2;0.449221!10737-110B8;0.588735!10025-101D7;0.327482!10044-101F8;0.848073!10424-106D1;0.7956!10463-106H4;0.052983!10616-108G4;0.932556!10486-107A9;0.0482998!10062-101H8;0.128711!10202-103F4;0.510286!10158-103A5;0.226815!10441-106E9;0.265906!10031-101E4;0.484957!10063-101H9;0.956375!10063-101H9;0.717754!11763-123H8;0.842228!11765-123I1;0.833879!11768-123I4;0.954981!10807-111A6;0.793156!10790-110H7;0.438785!10798-110I6;0.570878!10786-110H3;0.0580963!10591-108D6;0.524283!10593-108D8;0.373719!10590-108D5;0.850267!10026-101D8;0.28782!10096-102C6;0.781807!10168-103B6;0.270703!10154-103A1;0.781134!10209-103G2;0.640094!10061-101H7;0.648657!10027-101D9;0.845424!10043-101F7;0.844783!10783-110G9;0.869287!10028-101E1;0.0780787!10060-101H6;0.624615!10203-103F5;0.75586!10059-101H5;0.763145!10047-101G2;0.998572!10029-101E2;0.812335!10058-101H4;0.738668!10418-106C4;0.576103!10492-107B6;0.206735!10694-109G1;0.0629489!10797-110I5;0.0777766!10057-101H3;0.750384!10100-102D1;0.321232!10055-101H1;0.359865!10204-103F6;0.59376!10191-103E2;0.841038!10563-108A5;0.943387
|name=CTCF_f2
|name=CTCF_f2
|tomtom_result=CTCF#MA0139.1;0;4.15941e-34;1.97988e-31;3.88915e-31;19;TGGCCACCAGGGGGCGCTA;TGGCCACCAGGGGGCGCTA;+!MSN4#MA0342.1;-8;0.000872666;0.415389;0.216292;5;TGGCCACCAGGGGGCGCTA;AGGGG;+!abi4#MA0123.1;-9;0.00089743;0.427177;0.216292;10;TGGCCACCAGGGGGCGCTA;GGGGGCACCG;-!RGM1#MA0366.1;-8;0.000999959;0.47598;0.216292;5;TGGCCACCAGGGGGCGCTA;AGGGG;+!RPN4#MA0373.1;-9;0.00116569;0.554868;0.216292;7;TGGCCACCAGGGGGCGCTA;GGTGGCG;+!MSN2#MA0341.1;-8;0.0016018;0.762456;0.216292;5;TGGCCACCAGGGGGCGCTA;AGGGG;+!INSM1#MA0155.1;-4;0.00161926;0.770766;0.216292;12;TGGCCACCAGGGGGCGCTA;TGTCAGGGGGCG;+!btd#MA0443.1;-8;0.00255007;1.21383;0.234949;10;TGGCCACCAGGGGGCGCTA;AGGGGGCGGA;+!Mycn#MA0104.2;-5;0.00270347;1.28685;0.234949;10;TGGCCACCAGGGGGCGCTA;CGCACGTGGC;+!Macho-1#MA0118.1;-7;0.00276403;1.31568;0.234949;9;TGGCCACCAGGGGGCGCTA;TGGGGGGTC;+!Zfp423#MA0116.1;0;0.00419891;1.99868;0.327174;15;TGGCCACCAGGGGGCGCTA;GCACCCCTGGGTGCC;-!TFAP2A#MA0003.1;-6;0.00577422;2.74853;0.371988;9;TGGCCACCAGGGGGCGCTA;CCCCCGGGC;-!MZF1_5-13#MA0057.1;-6;0.00735541;3.50117;0.371988;10;TGGCCACCAGGGGGCGCTA;GGAGGGGGAA;+!opa#MA0456.1;-4;0.00780831;3.71676;0.371988;12;TGGCCACCAGGGGGCGCTA;CAGCGGGGGGTC;-!AFT1#MA0269.1;-3;0.00800122;3.80858;0.371988;16;TGGCCACCAGGGGGCGCTA;CCAATCGGGTGCAATATGTAA;-!Myc#MA0147.1;-5;0.00817389;3.89077;0.371988;10;TGGCCACCAGGGGGCGCTA;CGCACGTGGC;+!NRG1#MA0347.1;-1;0.00840964;4.00299;0.371988;18;TGGCCACCAGGGGGCGCTA;CTAGATCAGGGTCCATCGCA;+!USV1#MA0413.1;1;0.00840964;4.00299;0.371988;19;TGGCCACCAGGGGGCGCTA;CACAAATTCAGGGGGAATTT;-!Lag1#MA0193.1;-3;0.00893381;4.2525;0.371988;7;TGGCCACCAGGGGGCGCTA;CTACCAA;+!YGR067C#MA0425.1;0;0.00898998;4.27923;0.371988;14;TGGCCACCAGGGGGCGCTA;TGAAAAAGTGGGGT;-!GIS1#MA0306.1;-5;0.0102297;4.86932;0.372978;9;TGGCCACCAGGGGGCGCTA;TTTAGGGGT;-!PLAG1#MA0163.1;0;0.0106069;5.04888;0.372978;14;TGGCCACCAGGGGGCGCTA;GGGGCCCAAGGGGG;+!EBF1#MA0154.1;-3;0.011144;5.30456;0.372978;10;TGGCCACCAGGGGGCGCTA;ACCCAAGGGA;+!ZEB1#MA0103.1;-7;0.011161;5.31265;0.372978;6;TGGCCACCAGGGGGCGCTA;CAGGTG;-!STP2#MA0395.1;-3;0.0111691;5.31648;0.372978;16;TGGCCACCAGGGGGCGCTA;TCGTCGTGCGGCGCCGATCA;-!NDT80#MA0343.1;4;0.0124965;5.94833;0.402915;17;TGGCCACCAGGGGGCGCTA;TTTCCGGCCACAAAAACGCAA;+!sna#MA0086.1;-7;0.0147716;7.03128;0.445543;6;TGGCCACCAGGGGGCGCTA;CAGGTG;+!MYC::MAX#MA0059.1;-4;0.0155308;7.39266;0.453803;11;TGGCCACCAGGGGGCGCTA;GAGCACGTGGT;+!SOK2#MA0385.1;-1;0.0169956;8.08991;0.460798;11;TGGCCACCAGGGGGCGCTA;TGCCTGCAGGT;-!ACE2#MA0267.1;-2;0.0172487;8.21036;0.460798;7;TGGCCACCAGGGGGCGCTA;ACCAGCA;+!REI1#MA0364.1;-6;0.0172487;8.21036;0.460798;7;TGGCCACCAGGGGGCGCTA;TCAGGGG;-
}}
}}

Latest revision as of 13:49, 7 September 2012

Full Name: CTCF_f2

Motif matrix
POACGT
1280.5564199254187890.0926431787442420.42170470519871270.2371713144134
2464.4796836864638464.47440468283971268.3183710759745664.0354796784958
3687.9014166643329231.049845961732161529.2975805851677413.05909591254647
4170.705198162565722433.9464715689414115.160130914649141.49613847763507
523.5311527076596332748.791852177486434.5843137212744754.40062051736051
61923.853073400493792.74285403930718537.7400196660248306.97199201797827
7115.807351984672341677.9044066589091024.69090207182642.90527840837429
8354.78114695503381303.7856977334266385.16201639799124817.5790780373256
92387.2992063806114177.09130221149164143.15107178185102153.76635874984012
108.12272021967308811.0723125662884442802.15889905783739.95400727997823
11967.079886076259416.4597155249559751866.286742269504711.481595253063388
12157.8770562578218107.686531295053271625.5519679962422970.1923835746661
1338.691363036934160.59479619359451762787.97727424508434.04450564816709
14118.1712063907407862.7868399333133952511.82509312037168.52479967936407
15296.4752445112322357.240617997612441.03911903974291166.5529575752058
161290.013475597660541.517121144159361475.33273157726954.44461080469106
17178.435605407019071445.86389955638581130.0211021453563106.98733201501787
18399.24425419286941002.3805140210958311.637792485936251148.0453784238705
191132.0681318726963693.1417630926046889.0964378375724147.00160632089722

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CTCF#MA0139.104.15941e-341.97988e-313.88915e-3119TGGCCACCAGGGGGCGCTATGGCCACCAGGGGGCGCTA+
MSN4#MA0342.1-80.0008726660.4153890.2162925TGGCCACCAGGGGGCGCTAAGGGG+
abi4#MA0123.1-90.000897430.4271770.21629210TGGCCACCAGGGGGCGCTAGGGGGCACCG-
RGM1#MA0366.1-80.0009999590.475980.2162925TGGCCACCAGGGGGCGCTAAGGGG+
RPN4#MA0373.1-90.001165690.5548680.2162927TGGCCACCAGGGGGCGCTAGGTGGCG+
MSN2#MA0341.1-80.00160180.7624560.2162925TGGCCACCAGGGGGCGCTAAGGGG+
INSM1#MA0155.1-40.001619260.7707660.21629212TGGCCACCAGGGGGCGCTATGTCAGGGGGCG+
btd#MA0443.1-80.002550071.213830.23494910TGGCCACCAGGGGGCGCTAAGGGGGCGGA+
Mycn#MA0104.2-50.002703471.286850.23494910TGGCCACCAGGGGGCGCTACGCACGTGGC+
Macho-1#MA0118.1-70.002764031.315680.2349499TGGCCACCAGGGGGCGCTATGGGGGGTC+
Zfp423#MA0116.100.004198911.998680.32717415TGGCCACCAGGGGGCGCTAGCACCCCTGGGTGCC-
TFAP2A#MA0003.1-60.005774222.748530.3719889TGGCCACCAGGGGGCGCTACCCCCGGGC-
MZF1_5-13#MA0057.1-60.007355413.501170.37198810TGGCCACCAGGGGGCGCTAGGAGGGGGAA+
opa#MA0456.1-40.007808313.716760.37198812TGGCCACCAGGGGGCGCTACAGCGGGGGGTC-
AFT1#MA0269.1-30.008001223.808580.37198816TGGCCACCAGGGGGCGCTACCAATCGGGTGCAATATGTAA-
Myc#MA0147.1-50.008173893.890770.37198810TGGCCACCAGGGGGCGCTACGCACGTGGC+
NRG1#MA0347.1-10.008409644.002990.37198818TGGCCACCAGGGGGCGCTACTAGATCAGGGTCCATCGCA+
USV1#MA0413.110.008409644.002990.37198819TGGCCACCAGGGGGCGCTACACAAATTCAGGGGGAATTT-
Lag1#MA0193.1-30.008933814.25250.3719887TGGCCACCAGGGGGCGCTACTACCAA+
YGR067C#MA0425.100.008989984.279230.37198814TGGCCACCAGGGGGCGCTATGAAAAAGTGGGGT-
GIS1#MA0306.1-50.01022974.869320.3729789TGGCCACCAGGGGGCGCTATTTAGGGGT-
PLAG1#MA0163.100.01060695.048880.37297814TGGCCACCAGGGGGCGCTAGGGGCCCAAGGGGG+
EBF1#MA0154.1-30.0111445.304560.37297810TGGCCACCAGGGGGCGCTAACCCAAGGGA+
ZEB1#MA0103.1-70.0111615.312650.3729786TGGCCACCAGGGGGCGCTACAGGTG-
STP2#MA0395.1-30.01116915.316480.37297816TGGCCACCAGGGGGCGCTATCGTCGTGCGGCGCCGATCA-
NDT80#MA0343.140.01249655.948330.40291517TGGCCACCAGGGGGCGCTATTTCCGGCCACAAAAACGCAA+
sna#MA0086.1-70.01477167.031280.4455436TGGCCACCAGGGGGCGCTACAGGTG+
MYC::MAX#MA0059.1-40.01553087.392660.45380311TGGCCACCAGGGGGCGCTAGAGCACGTGGT+
SOK2#MA0385.1-10.01699568.089910.46079811TGGCCACCAGGGGGCGCTATGCCTGCAGGT-
ACE2#MA0267.1-20.01724878.210360.4607987TGGCCACCAGGGGGCGCTAACCAGCA+
REI1#MA0364.1-60.01724878.210360.4607987TGGCCACCAGGGGGCGCTATCAGGGG-
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