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MacroAPE 1083:CRATCGC,motif590: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.43;1425.71;1.43;1.43!2;610.61;1.43;653.51;164.45!3;979.55;1.43;1.43;447.59!4;1.43;1.43;1.43;1425.71!5;418.99;1008.15;1.43;1.43!6;267.41;1....")
 
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06!11837-124H1;0.210375!10568-108B1;0.0186393!13230-141I8;0.513992!13231-141I9;0.0794246!10696-109G3;0.108697!10493-107B7;0.279311!10494-107B8;0.521537!10850-111F4;0.0655031!10851-111F5;0.248911!10852-111F6;0.115023!10853-111F7;0.135661!10854-111F8;0.205638!10855-111F9;0.55408!10856-111G1;0.105808!10847-111F1;0.446304!10846-111E9;0.0098278!10848-111F2;0.259902!10845-111E8;0.130552!10857-111G2;0.266624!10858-111G3;0.151547!10156-103A3;0.050118!11901-125F2;0.702567!11902-125F3;0.795229!11903-125F4;0.883535!10689-109F5;0.597791!10648-109A9;0.00585599!10784-110H1;0.0543235!10744-110C6;0.408312!10772-110F7;0.886511!10474-106I6;0.215732!10600-108E6;0.76311!10684-109E9;0.0116212!12226-129F3;0.908956!12227-129F4;0.608114!10508-107D4;0.510991!10539-107G8;0.346536!10607-108F4;0.216695!10555-107I6;0.0619026!10774-110F9;0.277773!10637-108I7;0.0998293!10663-109C6;0.196871!10728-110A8;0.45827!10729-110A9;0.120709!10430-106D7;0.416046!10730-110B1;0.0134229!10813-111B3;0.193604!10812-111B2;0.573509!10037-101F1;0.341421!10172-103C1;0.629524!10163-103B1;0.612585!10076-102A4;0.808129!10073-102A1;0.541658!10036-101E9;0.676044!10195-103E6;0.679805!10277-104E7;0.594808!10434-106E2;0.728483!10550-107I1;0.180665!10545-107H5;0.159457!10544-107H4;0.668108!10704-109H2;0.877443!10510-107D6;0.437612!10558-107I9;0.39077!10020-101D2;0.216007!10732-110B3;0.137601!10049-101G4;0.0744687!10698-109G5;0.127748!10437-106E5;0.481124!10417-106C3;0.0027162!10035-101E8;0.227307!10171-103B9;0.60419!10157-103A4;0.560136!10034-101E7;0.628166!10072-101I9;0.618704!10199-103F1;0.52357!10200-103F2;0.192391!10697-109G4;0.140329!10723-110A3;0.328693!10179-103C8;0.599664!10160-103A7;0.664774!10180-103C9;0.686546!10162-103A9;0.0771103!10021-101D3;0.0754694!10840-111E3;0.408091!10706-109H4;0.161237!10033-101E6;0.0419914!10032-101E5;0.678514!10490-107B4;0.616871!10439-106E7;0.0992097!10022-101D4;0.208078!10176-103C5;0.140535!10469-106I1;0.694787!10067-101I4;0.32691!10411-106B6;0.895857!10471-106I3;0.083751!10030-101E3;0.387706!10475-106I7;0.628485!10787-110H4;0.0397348!10477-106I9;0.0831013!10695-109G2;0.152802!11771-123I7;0.177018!11772-123I8;0.535966!11773-123I9;0.694901!10093-102C3;0.399099!10442-106F1;0.200232!10442-106F1;0.623952!10201-103F3;0.759245!10639-108I9;0.0259894!11843-124H7;0.268017!11841-124H5;0.91694!10693-109F9;0.671413!10436-106E4;0.443424!10483-107A6;0.172695!10282-104F3;0.322713!10023-101D5;0.0337297!10066-101I3;0.145862!10065-101I2;0.433861!10800-110I8;0.508429!10610-108F7;0.0353879!10841-111E4;0.0372531!10541-107H1;0.0927826!10842-111E5;0.0311677!10562-108A4;0.0738956!10024-101D6;0.142883!10064-101I1;0.297869!10609-108F6;0.80277!10048-101G3;0.168732!10781-110G7;0.0770481!10181-103D1;0.874637!10159-103A6;0.770361!10056-101H2;0.698462!10737-110B8;0.884775!10025-101D7;0.306393!10044-101F8;0.51501!10424-106D1;0.995485!10463-106H4;0.534952!10616-108G4;0.70292!10486-107A9;0.702336!10062-101H8;0.528614!10202-103F4;0.629649!10158-103A5;0.327626!10441-106E9;0.830164!10031-101E4;0.00668135!10063-101H9;0.645818!10063-101H9;0.58899!11763-123H8;0.387344!11765-123I1;0.0645946!11768-123I4;0.0327113!10807-111A6;0.0264375!10790-110H7;0.0191141!10798-110I6;0.0305399!10786-110H3;0.185962!10591-108D6;0.0425855!10593-108D8;0.0738737!10590-108D5;0.202571!10026-101D8;0.0328534!10096-102C6;0.631042!10168-103B6;0.0559665!10154-103A1;0.519905!10209-103G2;0.917832!10061-101H7;0.386139!10027-101D9;0.856584!10043-101F7;0.128824!10783-110G9;0.161302!10028-101E1;0.115076!10060-101H6;0.208495!10203-103F5;0.509942!10059-101H5;0.328329!10047-101G2;0.402828!10029-101E2;0.778237!10058-101H4;0.313062!10418-106C4;0.393144!10492-107B6;0.0136558!10694-109G1;0.00858753!10797-110I5;0.656882!10057-101H3;0.720238!10100-102D1;0.500124!10055-101H1;0.0801502!10204-103F6;0.584177!10191-103E2;0.114369!10563-108A5;0.442335
|name=CRATCGC,motif590,CNhs12322,T:1430.0(35.79%),B:18774.5(27.36%),P:1e-30
|name=CRATCGC,motif590,CNhs12322,T:1430.0(35.79%),B:18774.5(27.36%),P:1e-30
|tomtom_result=Ddit3::Cebpa#MA0019.1;5;0.00921022;4.38406;1;7;CGATCGC;AGATGCAATCCC;+!NFYA#MA0060.1;6;0.0113162;5.38649;1;7;CGATCGC;CTCAGCCAATCAGCGC;+!GATA3#MA0037.1;0;0.0139086;6.62051;1;6;CGATCGC;CTATCT;-
}}
}}

Latest revision as of 13:56, 7 September 2012

Full Name: CRATCGC,motif590,CNhs12322,T:1430.0(35.79%),B:18774.5(27.36%),P:1e-30

Motif matrix
POACGT
11.431425.711.431.43
2610.611.43653.51164.45
3979.551.431.43447.59
41.431.431.431425.71
5418.991008.151.431.43
6267.411.431159.731.43
7228.8807.95391.821.43

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Ddit3::Cebpa#MA0019.150.009210224.3840617CGATCGCAGATGCAATCCC+
NFYA#MA0060.160.01131625.3864917CGATCGCCTCAGCCAATCAGCGC+
GATA3#MA0037.100.01390866.6205116CGATCGCCTATCT-
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