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MacroAPE 1083:AGTCTCAAGTT,motif953: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;318.637;0.349;21.638;8.376!2;55.491;48.162;220.568;24.779!3;52.001;8.376;2.094;286.529!4;34.9;257.562;16.403;40.135!5;60.377;36.994;0.349;25...")
 
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9;0.884603!10788-110H5;0.892052!10792-110H9;0.45966!10765-110E9;0.802545!10829-111D1;0.729419!10830-111D2;0.347039!10831-111D3;0.809431!10832-111D4;0.904059!10833-111D5;0.664533!10764-110E8;0.818479!10770-110F5;0.683126!10399-106A3;0.788047!10400-106A4;0.67786!10405-106A9;0.793812!10834-111D6;0.527052!10835-111D7;0.405925!10836-111D8;0.061063!10837-111D9;0.0310905!10699-109G6;0.0648196!10802-111A1;0.312192!10796-110I4;0.0464723!10010-101C1;0.56958!10810-111A9;0.12088!10421-106C7;0.00537491!10708-109H6;0.988009!12235-129G3;0.190239!12236-129G4;0.645522!12237-129G5;0.843384!10167-103B5;0.519013!10151-102I7;0.687618!10428-106D5;0.728237!10795-110I3;0.842618!10805-111A4;0.0269452!10052-101G7;0.58349!10189-103D9;0.369107!10589-108D4;0.0437262!10425-106D2;0.0329323!10427-106D4;0.154113!10702-109G9;0.537745!10432-106D9;0.950041!10496-107C1;0.721388!10718-109I7;0.53178!10011-101C2;0.719057!10053-101G8;0.220855!10686-109F2;0.816523!10084-102B3;0.0268667!10012-101C3;0.350699!10085-102B4;0.787726!10482-107A5;0.61339!10419-106C5;0.973158!10080-102A8;0.844785!10760-110E4;0.191811!10709-109H7;0.39512!10710-109H8;0.799513!10703-109H1;0.431301!10719-109I8;0.00404661!10642-109A3;0.1296!10177-103C6;0.341142!10164-103B2;0.81412!10173-103C2;0.809249!10166-103B4;0.0942581!10083-102B2;0.181415!10188-103D8;0.0345293!10552-107I3;0.611738!10553-107I4;0.481822!10013-101C4;0.0474382!10536-107G5;0.141814!10618-108G6;0.845833!10423-106C9;0.293582!10785-110H2;0.357734!12238-129G6;0.695501!12239-129G7;0.258095!12240-129G8;0.15636!10416-106C2;0.0605391!10801-110I9;0.811619!10766-110F1;0.079797!10824-111C5;0.169482!10825-111C6;0.00757678!10826-111C7;0.00672779!10454-106G4;0.00607427!10409-106B4;0.0341397!10638-108I8;0.367286!10636-108I6;0.902083!10513-107D9;0.409085!10420-106C6;0.640368!10082-102B1;0.294595!10014-101C5;0.0541489!10070-101I7;0.186727!10452-106G2;0.321359!10453-106G3;0.898921!10449-106F8;0.958425!10042-101F6;0.881634!10069-101I6;0.814636!10193-103E4;0.191909!10631-108I1;0.591168!10438-106E6;0.684865!10488-107B2;0.635037!10196-103E7;0.077577!10071-101I8;0.575865!10071-101I8;0.839086!10041-101F5;0.884261!10451-106G1;0.0360498!10450-106F9;0.624281!10604-108F1;0.804173!10605-108F2;0.825758!10606-108F3;0.691572!10603-108E9;0.963533!10497-107C2;0.201875!10448-106F7;0.684996!10643-109A4;0.665459!10426-106D3;0.648463!10431-106D8;0.636999!10197-103E8;0.781324!10443-106F2;0.380177!10815-111B5;0.785915!10816-111B6;0.818769!10817-111B7;0.768192!10015-101C6;0.792713!10410-106B5;0.391504!10054-101G9;0.737301!10758-110E2;0.842869!10711-109H9;0.111782!10040-101F4;0.245103!10470-106I2;0.904202!10415-106C1;0.673588!10198-103E9;0.532501!10614-108G2;0.344083!10612-108F9;0.696665!10549-107H9;0.95862!10615-108G3;0.252116!10487-107B1;0.350943!10433-106E1;0.866182!10688-109F4;0.395693!10444-106F3;0.908239!10444-106F3;0.988976!10485-107A8;0.898599!10413-106B8;0.79145!10175-103C4;0.383491!10161-103A8;0.366699!12131-128D7;0.551444!10624-108H3;0.646497!10712-109I1;0.357841!10205-103F7;0.839955!10206-103F8;0.489441!10207-103F9;0.335268!10050-101G5;0.695243!10051-101G6;0.600186!10016-101C7;0.303631!10046-101G1;0.383826!10778-110G4;0.065062!10633-108I3;0.884767!10818-111B8;0.172741!10819-111B9;0.0378153!10820-111C1;0.0459071!10484-107A7;0.0358483!10808-111A7;0.363316!10169-103B7;0.411214!10153-102I9;0.723794!13425-144D5;0.919754!13433-144E4;0.531947!13437-144E8;0.518844!11904-125F5;0.592395!11905-125F6;0.876784!10039-101F3;0.745871!10791-110H8;0.985876!10017-101C8;0.544634!10045-101F9;0.27185!10509-107D5;0.0258814!10839-111E2;0.369853!10692-109F8;0.628821!10079-102A7;0.761768!10078-102A6;0.730117!10721-110A1;0.702455!10569-108B2;0.350431!10570-108B3;0.7777!10571-108B4;0.955254!10647-109A8;0.475738!10752-110D5;0.54236!10782-110G8;0.0191221!10726-110A6;0.876712!10018-101C9;0.667533!10086-102B5;0.171737!10182-103D2;0.0392136!10165-103B3;0.303047!10499-107C4;0.527005!10408-106B3;0.448484!10019-101D1;0.463174!10068-101I5;0.161622!10075-102A3;0.196431!10077-102A5;0.400428!10727-110A7;0.603116!10775-110G1;0.854853!10412-106B7;0.490319!12231-129F8;0.373797!12232-129F9;0.0119973!12233-129G1;0.0488163!12234-129G2;0.0163135!10414-106B9;0.0358992!10170-103B8;0.869914!10183-103D3;0.395739!10150-102I6;0.757707!10174-103C3;0.798692!10155-103A2;0.549388!10038-101F2;0.717627!10838-111E1;0.880341!10759-110E3;0.489205!10514-107E1;0.796648!10465-106H6;0.697286!10691-109F7;0.467663!10843-111E6;0.829487!10844-111E7;0.191124!11747-123G1;0.209193!11748-123G2;0.897662!11749-123G3;0.739361!11750-123G4;0.632889!11751-123G5;0.9472!11840-124H4;0.958454!11752-123G6;0.70034!11753-123G7;0.751117!11754-123G8;0.967921!11755-123G9;0.782078!11756-123H1;0.990806!11833-124G6;0.93138!11760-123H5;0.0677382!11836-124G9;0.741427!11758-123H3;0.612644!11835-124G8;0.688637!11762-123H7;0.0796136!11838-124H2;0.515032!11757-123H2;0.859189!11759-123H4;0.726665!11761-123H6;0.74443!11842-124H6;0.711223!11837-124H1;0.280429!10568-108B1;0.266702!13230-141I8;0.129338!13231-141I9;0.152402!10696-109G3;0.111972!10493-107B7;0.491761!10494-107B8;0.761031!10850-111F4;0.400167!10851-111F5;0.828887!10852-111F6;0.422162!10853-111F7;0.842704!10854-111F8;0.944158!10855-111F9;0.245228!10856-111G1;0.500243!10847-111F1;0.673504!10846-111E9;0.537397!10848-111F2;0.651502!10845-111E8;0.787487!10857-111G2;0.567365!10858-111G3;0.527112!10156-103A3;0.893967!11901-125F2;0.866521!11902-125F3;0.120213!11903-125F4;0.547278!10689-109F5;0.607509!10648-109A9;0.671196!10784-110H1;0.347105!10744-110C6;0.71306!10772-110F7;0.134548!10474-106I6;0.983804!10600-108E6;0.051064!10684-109E9;0.862411!12226-129F3;0.470575!12227-129F4;0.207155!10508-107D4;0.661462!10539-107G8;0.0727377!10607-108F4;0.424839!10555-107I6;0.470871!10774-110F9;0.00775324!10637-108I7;0.600925!10663-109C6;0.455765!10728-110A8;0.760582!10729-110A9;0.129126!10430-106D7;0.302832!10730-110B1;0.854329!10813-111B3;0.244777!10812-111B2;0.434804!10037-101F1;0.727948!10172-103C1;0.858346!10163-103B1;0.377134!10076-102A4;0.704765!10073-102A1;0.508309!10036-101E9;0.825644!10195-103E6;0.891103!10277-104E7;0.799546!10434-106E2;0.298311!10550-107I1;0.935108!10545-107H5;0.446923!10544-107H4;0.983408!10704-109H2;0.572045!10510-107D6;0.511742!10558-107I9;0.289984!10020-101D2;0.077937!10732-110B3;0.274041!10049-101G4;0.908222!10698-109G5;0.32043!10437-106E5;0.68209!10417-106C3;0.780983!10035-101E8;0.456395!10171-103B9;0.846158!10157-103A4;0.715558!10034-101E7;0.707002!10072-101I9;0.804173!10199-103F1;0.535263!10200-103F2;0.746159!10697-109G4;0.106569!10723-110A3;0.0908089!10179-103C8;0.544144!10160-103A7;0.296127!10180-103C9;0.297033!10162-103A9;0.00496658!10021-101D3;0.0529144!10840-111E3;0.908581!10706-109H4;0.898363!10033-101E6;0.896977!10032-101E5;0.759294!10490-107B4;0.84764!10439-106E7;0.682564!10022-101D4;0.321538!10176-103C5;0.173531!10469-106I1;0.586923!10067-101I4;0.88166!10411-106B6;0.199446!10471-106I3;0.827078!10030-101E3;0.90424!10475-106I7;0.452404!10787-110H4;0.721715!10477-106I9;0.948204!10695-109G2;0.946004!11771-123I7;0.175039!11772-123I8;0.216504!11773-123I9;0.27415!10093-102C3;0.189819!10442-106F1;0.898092!10442-106F1;0.914951!10201-103F3;0.848806!10639-108I9;0.458811!11843-124H7;0.257084!11841-124H5;0.135927!10693-109F9;0.716322!10436-106E4;0.210443!10483-107A6;0.644986!10282-104F3;0.490016!10023-101D5;0.320469!10066-101I3;0.207805!10065-101I2;0.0530615!10800-110I8;0.0203628!10610-108F7;0.400929!10841-111E4;0.721658!10541-107H1;0.281093!10842-111E5;0.365395!10562-108A4;0.111946!10024-101D6;0.354848!10064-101I1;0.417802!10609-108F6;0.96328!10048-101G3;0.32575!10781-110G7;0.177623!10181-103D1;0.0158025!10159-103A6;0.374484!10056-101H2;0.633949!10737-110B8;0.820675!10025-101D7;0.139823!10044-101F8;0.487124!10424-106D1;0.194909!10463-106H4;0.825149!10616-108G4;0.258817!10486-107A9;0.641618!10062-101H8;0.599654!10202-103F4;0.526541!10158-103A5;0.452588!10441-106E9;0.781182!10031-101E4;0.940603!10063-101H9;0.899086!10063-101H9;0.681419!11763-123H8;0.785919!11765-123I1;0.906074!11768-123I4;0.445182!10807-111A6;0.493411!10790-110H7;0.311445!10798-110I6;0.340838!10786-110H3;0.857636!10591-108D6;0.844286!10593-108D8;0.491882!10590-108D5;0.556737!10026-101D8;0.512156!10096-102C6;0.804139!10168-103B6;0.042778!10154-103A1;0.646741!10209-103G2;0.619327!10061-101H7;0.401145!10027-101D9;0.438699!10043-101F7;0.0793231!10783-110G9;0.0495847!10028-101E1;0.816865!10060-101H6;0.75757!10203-103F5;0.714488!10059-101H5;0.330314!10047-101G2;0.438509!10029-101E2;0.326943!10058-101H4;0.632042!10418-106C4;0.524271!10492-107B6;0.246998!10694-109G1;0.935909!10797-110I5;0.624615!10057-101H3;0.0167439!10100-102D1;0.0790154!10055-101H1;0.108535!10204-103F6;0.11934!10191-103E2;0.0996309!10563-108A5;0.159028
|name=AGTCTCAAGTT,motif953,CNhs10616,T:349.0(10.26%),B:3876.2(5.52%),P:1e-27
|name=AGTCTCAAGTT,motif953,CNhs10616,T:349.0(10.26%),B:3876.2(5.52%),P:1e-27
|tomtom_result=vnd#MA0253.1;-2;0.000766442;0.364827;0.729653;9;AGTCTCAAGTT;TTTCAAGTG;+!tin#MA0247.1;-3;0.00190086;0.904807;0.904807;8;AGTCTCAAGTT;CTCAAGTG;+!Six4#MA0204.1;-1;0.010532;5.01321;1;6;AGTCTCAAGTT;GTATCA;-!STAT1#MA0137.1;1;0.0145448;6.92331;1;11;AGTCTCAAGTT;CAGTTTCATTTTCC;-!ceh-22#MA0264.1;-2;0.0209685;9.98099;1;9;AGTCTCAAGTT;TTTCAAGTGGT;-
}}
}}

Latest revision as of 14:00, 7 September 2012

Full Name: AGTCTCAAGTT,motif953,CNhs10616,T:349.0(10.26%),B:3876.2(5.52%),P:1e-27

Motif matrix
POACGT
1318.6370.34921.6388.376
255.49148.162220.56824.779
352.0018.3762.094286.529
434.9257.56216.40340.135
560.37736.9940.349251.28
624.43256.1660.34968.055
7277.45555.4910.34915.705
8307.81820.5912.79217.799
933.15568.753184.27262.82
1014.6580.3490.349333.644
1126.5246.9827.92287.576

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
vnd#MA0253.1-20.0007664420.3648270.7296539AGTCTCAAGTTTTTCAAGTG+
tin#MA0247.1-30.001900860.9048070.9048078AGTCTCAAGTTCTCAAGTG+
Six4#MA0204.1-10.0105325.0132116AGTCTCAAGTTGTATCA-
STAT1#MA0137.110.01454486.92331111AGTCTCAAGTTCAGTTTCATTTTCC-
ceh-22#MA0264.1-20.02096859.9809919AGTCTCAAGTTTTTCAAGTGGT-
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