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MacroAPE 1083:Motif90: Difference between revisions

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069!10597-108E3;0.371437!10717-109I6;0.290935!10455-106G5;0.027623!10534-107G3;0.531948!10429-106D6;0.966311!10464-106H5;0.507964!10827-111C8;0.388921!10789-110H6;0.241455!10828-111C9;0.096629!10788-110H5;0.591077!10792-110H9;0.993812!10765-110E9;0.0492771!10829-111D1;0.507163!10830-111D2;0.507294!10831-111D3;0.15707!10832-111D4;0.283972!10833-111D5;0.650825!10764-110E8;0.420063!10770-110F5;0.143517!10399-106A3;0.16294!10400-106A4;0.293218!10405-106A9;0.268459!10834-111D6;0.321717!10835-111D7;0.445769!10836-111D8;0.748419!10837-111D9;0.571155!10699-109G6;0.806463!10802-111A1;0.594396!10796-110I4;0.737635!10010-101C1;0.104158!10810-111A9;0.126761!10421-106C7;0.0944886!10708-109H6;0.153756!12235-129G3;0.0610361!12236-129G4;0.846705!12237-129G5;0.675491!10167-103B5;0.569253!10151-102I7;0.297698!10428-106D5;0.431888!10795-110I3;0.816481!10805-111A4;0.614036!10052-101G7;0.277723!10189-103D9;0.735004!10589-108D4;0.0983584!10425-106D2;0.142611!10427-106D4;0.88796!10702-109G9;0.569684!10432-106D9;0.227195!10496-107C1;0.0483334!10718-109I7;0.296504!10011-101C2;0.328651!10053-101G8;0.534354!10686-109F2;0.00193709!10084-102B3;0.036727!10012-101C3;0.268647!10085-102B4;0.260433!10482-107A5;0.940451!10419-106C5;0.0972947!10080-102A8;0.246226!10760-110E4;0.753469!10709-109H7;0.0274901!10710-109H8;0.17568!10703-109H1;0.101574!10719-109I8;0.413185!10642-109A3;0.388868!10177-103C6;0.412032!10164-103B2;0.372654!10173-103C2;0.379441!10166-103B4;0.098919!10083-102B2;0.111218!10188-103D8;0.167936!10552-107I3;0.441042!10553-107I4;0.224051!10013-101C4;0.408054!10536-107G5;0.728706!10618-108G6;0.21841!10423-106C9;0.0949043!10785-110H2;0.332706!12238-129G6;0.245283!12239-129G7;0.705466!12240-129G8;0.702003!10416-106C2;0.427874!10801-110I9;0.224148!10766-110F1;0.434826!10824-111C5;0.663189!10825-111C6;0.137698!10826-111C7;0.112002!10454-106G4;0.14349!10409-106B4;0.307528!10638-108I8;0.96187!10636-108I6;0.0404685!10513-107D9;0.245544!10420-106C6;0.198936!10082-102B1;0.387832!10014-101C5;0.708429!10070-101I7;0.369779!10452-106G2;0.350506!10453-106G3;0.948585!10449-106F8;0.871994!10042-101F6;0.901749!10069-101I6;0.308668!10193-103E4;0.159205!10631-108I1;0.504569!10438-106E6;0.618825!10488-107B2;0.094091!10196-103E7;0.77334!10071-101I8;0.522661!10071-101I8;0.378856!10041-101F5;0.529554!10451-106G1;0.0283369!10450-106F9;0.142527!10604-108F1;0.452214!10605-108F2;0.00230612!10606-108F3;0.00393455!10603-108E9;0.00925748!10497-107C2;0.00359209!10448-106F7;0.066903!10643-109A4;0.301564!10426-106D3;0.107085!10431-106D8;0.140282!10197-103E8;0.0377274!10443-106F2;0.358074!10815-111B5;0.0612061!10816-111B6;0.298043!10817-111B7;0.244418!10015-101C6;0.21808!10410-106B5;0.443356!10054-101G9;0.00493366!10758-110E2;0.463729!10711-109H9;0.193105!10040-101F4;0.0741978!10470-106I2;0.274602!10415-106C1;0.166492!10198-103E9;0.106385!10614-108G2;0.65145!10612-108F9;0.0652392!10549-107H9;0.251833!10615-108G3;0.172935!10487-107B1;0.16361!10433-106E1;0.313097!10688-109F4;0.0254134!10444-106F3;0.323857!10444-106F3;0.1387!10485-107A8;0.146634!10413-106B8;0.090185!10175-103C4;0.555624!10161-103A8;0.347755!12131-128D7;0.258186!10624-108H3;0.590276!10712-109I1;0.833096!10205-103F7;0.512848!10206-103F8;0.269613!10207-103F9;0.323776!10050-101G5;0.518266!10051-101G6;0.668526!10016-101C7;0.802184!10046-101G1;0.740342!10778-110G4;0.291816!10633-108I3;0.718478!10818-111B8;0.108974!10819-111B9;0.182256!10820-111C1;0.215444!10484-107A7;0.175553!10808-111A7;0.080417!10169-103B7;0.703894!10153-102I9;0.330385!13425-144D5;0.366078!13433-144E4;0.526533!13437-144E8;0.509566!11904-125F5;0.524831!11905-125F6;0.120535!10039-101F3;0.396005!10791-110H8;0.32432!10017-101C8;0.351831!10045-101F9;0.515733!10509-107D5;0.657304!10839-111E2;0.0148628!10692-109F8;0.0159121!10079-102A7;0.055559!10078-102A6;0.466672!10721-110A1;0.604572!10569-108B2;0.15976!10570-108B3;0.990614!10571-108B4;0.704965!10647-109A8;0.919769!10752-110D5;0.264787!10782-110G8;0.528777!10726-110A6;0.539115!10018-101C9;0.0553092!10086-102B5;0.36285!10182-103D2;0.909308!10165-103B3;0.191724!10499-107C4;0.174658!10408-106B3;0.137734!10019-101D1;0.0895035!10068-101I5;0.261513!10075-102A3;0.257549!10077-102A5;0.215017!10727-110A7;0.0262982!10775-110G1;0.344136!10412-106B7;0.716896!12231-129F8;0.360019!12232-129F9;0.873775!12233-129G1;0.956393!12234-129G2;0.890253!10414-106B9;0.427447!10170-103B8;0.153229!10183-103D3;0.188384!10150-102I6;0.2845!10174-103C3;0.231943!10155-103A2;0.0883272!10038-101F2;0.089451!10838-111E1;0.18766!10759-110E3;0.64069!10514-107E1;0.0105537!10465-106H6;0.221655!10691-109F7;0.0426773!10843-111E6;0.0125761!10844-111E7;0.454833!11747-123G1;0.269468!11748-123G2;0.438183!11749-123G3;0.655133!11750-123G4;0.989453!11751-123G5;0.209029!11840-124H4;0.397888!11752-123G6;0.298584!11753-123G7;0.512576!11754-123G8;0.886622!11755-123G9;0.610841!11756-123H1;0.613121!11833-124G6;0.21667!11760-123H5;0.767567!11836-124G9;0.26728!11758-123H3;0.640912!11835-124G8;0.781365!11762-123H7;0.47539!11838-124H2;0.395806!11757-123H2;0.590064!11759-123H4;0.996137!11761-123H6;0.759103!11842-124H6;0.486031!11837-124H1;0.726489!10568-108B1;0.394431!13230-141I8;0.401546!13231-141I9;0.633264!10696-109G3;0.393871!10493-107B7;0.200617!10494-107B8;0.00507768!10850-111F4;0.223954!10851-111F5;0.229945!10852-111F6;0.487376!10853-111F7;0.250444!10854-111F8;0.205079!10855-111F9;0.339738!10856-111G1;0.758229!10847-111F1;0.294426!10846-111E9;0.0663471!10848-111F2;0.0843847!10845-111E8;0.0287127!10857-111G2;0.154796!10858-111G3;0.117254!10156-103A3;0.318803!11901-125F2;0.254639!11902-125F3;0.612721!11903-125F4;0.589804!10689-109F5;0.532082!10648-109A9;0.241801!10784-110H1;0.496065!10744-110C6;0.00610403!10772-110F7;0.149411!10474-106I6;0.359621!10600-108E6;0.288058!10684-109E9;0.469029!12226-129F3;0.73557!12227-129F4;0.0279337!10508-107D4;0.471946!10539-107G8;0.903059!10607-108F4;0.576596!10555-107I6;0.338941!10774-110F9;0.973103!10637-108I7;0.212157!10663-109C6;0.57634!10728-110A8;0.751407!10729-110A9;0.260542!10430-106D7;0.709752!10730-110B1;0.894348!10813-111B3;0.672616!10812-111B2;0.118765!10037-101F1;0.0745446!10172-103C1;0.408409!10163-103B1;0.224986!10076-102A4;0.272075!10073-102A1;0.348017!10036-101E9;0.467557!10195-103E6;0.452744!10277-104E7;0.362258!10434-106E2;0.472852!10550-107I1;0.261955!10545-107H5;0.0230968!10544-107H4;0.370083!10704-109H2;0.0649771!10510-107D6;0.636081!10558-107I9;0.0203585!10020-101D2;0.227939!10732-110B3;0.773818!10049-101G4;0.0351997!10698-109G5;0.493408!10437-106E5;0.301891!10417-106C3;0.0567479!10035-101E8;0.0300394!10171-103B9;0.239775!10157-103A4;0.301095!10034-101E7;0.264959!10072-101I9;0.302549!10199-103F1;0.507163!10200-103F2;0.0697966!10697-109G4;0.182997!10723-110A3;0.285738!10179-103C8;0.0960745!10160-103A7;0.256111!10180-103C9;0.223172!10162-103A9;0.25413!10021-101D3;0.297315!10840-111E3;0.654862!10706-109H4;0.77325!10033-101E6;0.765911!10032-101E5;0.196434!10490-107B4;0.308416!10439-106E7;0.037406!10022-101D4;0.0888744!10176-103C5;0.428573!10469-106I1;0.556779!10067-101I4;0.15228!10411-106B6;0.725127!10471-106I3;0.645993!10030-101E3;0.545808!10475-106I7;0.442568!10787-110H4;0.483655!10477-106I9;0.610546!10695-109G2;0.452261!11771-123I7;0.122809!11772-123I8;0.229369!11773-123I9;0.381702!10093-102C3;0.236072!10442-106F1;0.159852!10442-106F1;0.142246!10201-103F3;0.291901!10639-108I9;0.537905!11843-124H7;0.139872!11841-124H5;0.911341!10693-109F9;0.426119!10436-106E4;0.110625!10483-107A6;0.309574!10282-104F3;0.565348!10023-101D5;0.55541!10066-101I3;0.193954!10065-101I2;0.314252!10800-110I8;0.423252!10610-108F7;0.0461312!10841-111E4;0.111879!10541-107H1;0.285128!10842-111E5;0.421574!10562-108A4;0.392863!10024-101D6;0.0043731!10064-101I1;0.1743!10609-108F6;0.272493!10048-101G3;0.0545855!10781-110G7;0.586413!10181-103D1;0.0406062!10159-103A6;0.205573!10056-101H2;0.0752526!10737-110B8;0.194405!10025-101D7;0.40875!10044-101F8;0.0270006!10424-106D1;0.173557!10463-106H4;0.958331!10616-108G4;0.248027!10486-107A9;0.0524157!10062-101H8;0.0959163!10202-103F4;0.778086!10158-103A5;0.0559335!10441-106E9;0.17471!10031-101E4;0.147323!10063-101H9;0.450295!10063-101H9;0.696873!11763-123H8;0.252849!11765-123I1;0.724428!11768-123I4;0.202561!10807-111A6;0.996303!10790-110H7;0.349999!10798-110I6;0.788072!10786-110H3;0.511497!10591-108D6;0.279302!10593-108D8;0.250589!10590-108D5;0.32984!10026-101D8;0.397736!10096-102C6;0.383606!10168-103B6;0.00503717!10154-103A1;0.342737!10209-103G2;0.249828!10061-101H7;0.171457!10027-101D9;0.413879!10043-101F7;0.0323432!10783-110G9;0.0679441!10028-101E1;0.232326!10060-101H6;0.804179!10203-103F5;0.552659!10059-101H5;0.248848!10047-101G2;0.61989!10029-101E2;0.153911!10058-101H4;0.397853!10418-106C4;0.369833!10492-107B6;0.159843!10694-109G1;0.048105!10797-110I5;0.0363104!10057-101H3;0.0996044!10100-102D1;0.753829!10055-101H1;0.455661!10204-103F6;0.728645!10191-103E2;0.598584!10563-108A5;0.0657134
|name=motif90
|name=motif90
|tomtom_result=Pax5#MA0014.1;4;0.00438323;2.08642;1;8;CAGTGCTG;GGAGCACTGAAGCGTAACCG;+!Pax6#MA0069.1;0;0.00819131;3.89907;1;8;CAGTGCTG;AACTCATGCGTGAA;-!Nkx3-2#MA0122.1;2;0.00909816;4.33073;1;7;CAGTGCTG;TTAAGTGGA;+!ZNF354C#MA0130.1;-2;0.0106516;5.07017;1;6;CAGTGCTG;GTGGAT;-!En1#MA0027.1;0;0.0113767;5.41532;1;8;CAGTGCTG;AAGTAGTGCCC;+!bap#MA0211.1;2;0.0136284;6.48712;1;5;CAGTGCTG;TTAAGTG;+!ceh-22#MA0264.1;4;0.0152237;7.2465;1;7;CAGTGCTG;TTTCAAGTGGT;-!tin#MA0247.1;3;0.0176768;8.41416;1;5;CAGTGCTG;CTCAAGTG;+!GABPA#MA0062.2;4;0.0190772;9.08073;1;7;CAGTGCTG;CCGGAAGTGGC;+
}}
}}

Latest revision as of 14:03, 7 September 2012

Full Name: motif90

Motif matrix
POACGT
01207122442600
0245138000
0300451380
0400045138
0500451380
061131320015138100
07206260024512
0800451380

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax5#MA0014.140.004383232.0864218CAGTGCTGGGAGCACTGAAGCGTAACCG+
Pax6#MA0069.100.008191313.8990718CAGTGCTGAACTCATGCGTGAA-
Nkx3-2#MA0122.120.009098164.3307317CAGTGCTGTTAAGTGGA+
ZNF354C#MA0130.1-20.01065165.0701716CAGTGCTGGTGGAT-
En1#MA0027.100.01137675.4153218CAGTGCTGAAGTAGTGCCC+
bap#MA0211.120.01362846.4871215CAGTGCTGTTAAGTG+
ceh-22#MA0264.140.01522377.246517CAGTGCTGTTTCAAGTGGT-
tin#MA0247.130.01767688.4141615CAGTGCTGCTCAAGTG+
GABPA#MA0062.240.01907729.0807317CAGTGCTGCCGGAAGTGGC+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif90&oldid=2134221"