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MacroAPE 1083:TKAAAGBGRCA,motif293: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;38.098;126.698;0.443;277.761!2;52.717;37.655;166.568;185.617!3;346.869;0.443;95.245;0.443!4;420.85;0.443;0.886;20.821!5;324.719;22.15;95.688...")
 
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27-111C8;0.888105!10789-110H6;0.816402!10828-111C9;0.361506!10788-110H5;0.797188!10792-110H9;0.194269!10765-110E9;0.735409!10829-111D1;0.298408!10830-111D2;0.566894!10831-111D3;0.35818!10832-111D4;0.608931!10833-111D5;0.313267!10764-110E8;0.640092!10770-110F5;0.947249!10399-106A3;0.453967!10400-106A4;0.356241!10405-106A9;0.288641!10834-111D6;0.274669!10835-111D7;0.855244!10836-111D8;0.302405!10837-111D9;0.684619!10699-109G6;0.840714!10802-111A1;0.978095!10796-110I4;0.485055!10010-101C1;0.247177!10810-111A9;0.0338025!10421-106C7;0.275163!10708-109H6;0.344525!12235-129G3;0.651106!12236-129G4;0.0639402!12237-129G5;0.0150614!10167-103B5;0.0344098!10151-102I7;0.135724!10428-106D5;0.193476!10795-110I3;0.108076!10805-111A4;0.251522!10052-101G7;0.101269!10189-103D9;0.0420378!10589-108D4;0.10157!10425-106D2;0.40108!10427-106D4;0.229245!10702-109G9;0.145048!10432-106D9;0.78505!10496-107C1;0.065565!10718-109I7;0.272703!10011-101C2;0.355029!10053-101G8;0.0105866!10686-109F2;0.783156!10084-102B3;0.159157!10012-101C3;0.141987!10085-102B4;0.149791!10482-107A5;0.41639!10419-106C5;0.376285!10080-102A8;0.287537!10760-110E4;0.0638548!10709-109H7;0.394118!10710-109H8;0.583848!10703-109H1;0.246214!10719-109I8;0.104777!10642-109A3;0.304101!10177-103C6;0.374946!10164-103B2;0.0486286!10173-103C2;0.160654!10166-103B4;0.0951672!10083-102B2;0.125717!10188-103D8;0.0532948!10552-107I3;0.0936048!10553-107I4;0.858953!10013-101C4;0.540903!10536-107G5;0.00627052!10618-108G6;0.000503189!10423-106C9;0.437316!10785-110H2;0.435168!12238-129G6;0.51456!12239-129G7;0.167057!12240-129G8;0.444854!10416-106C2;0.295419!10801-110I9;0.987533!10766-110F1;0.937975!10824-111C5;0.773072!10825-111C6;0.549141!10826-111C7;0.699749!10454-106G4;0.756201!10409-106B4;0.612877!10638-108I8;0.517446!10636-108I6;0.198392!10513-107D9;0.507774!10420-106C6;0.159156!10082-102B1;0.673471!10014-101C5;0.136199!10070-101I7;0.0852802!10452-106G2;0.0348713!10453-106G3;0.290264!10449-106F8;0.164389!10042-101F6;0.335321!10069-101I6;0.0669006!10193-103E4;0.0696273!10631-108I1;0.0881646!10438-106E6;0.708456!10488-107B2;0.991745!10196-103E7;0.947244!10071-101I8;0.138856!10071-101I8;0.0641075!10041-101F5;0.385086!10451-106G1;0.188947!10450-106F9;0.0585755!10604-108F1;0.432674!10605-108F2;0.548548!10606-108F3;0.4237!10603-108E9;0.728831!10497-107C2;0.666744!10448-106F7;0.852713!10643-109A4;0.068281!10426-106D3;0.109254!10431-106D8;0.386991!10197-103E8;0.153652!10443-106F2;0.00231969!10815-111B5;0.713879!10816-111B6;0.460086!10817-111B7;0.668228!10015-101C6;0.428252!10410-106B5;0.00341129!10054-101G9;0.93392!10758-110E2;0.0119771!10711-109H9;0.0415629!10040-101F4;0.00177192!10470-106I2;0.143145!10415-106C1;0.291643!10198-103E9;0.0212499!10614-108G2;0.0655977!10612-108F9;0.0993617!10549-107H9;0.368904!10615-108G3;0.240371!10487-107B1;0.786872!10433-106E1;0.346004!10688-109F4;0.982193!10444-106F3;0.324794!10444-106F3;0.372507!10485-107A8;0.391556!10413-106B8;0.204932!10175-103C4;0.205602!10161-103A8;0.0192381!12131-128D7;0.116498!10624-108H3;0.612239!10712-109I1;0.0394449!10205-103F7;0.1961!10206-103F8;0.00493512!10207-103F9;0.00898951!10050-101G5;0.265623!10051-101G6;0.142828!10016-101C7;0.172723!10046-101G1;0.142323!10778-110G4;0.18192!10633-108I3;0.561791!10818-111B8;0.207363!10819-111B9;0.69221!10820-111C1;0.77135!10484-107A7;0.611619!10808-111A7;0.411608!10169-103B7;0.254654!10153-102I9;0.0625815!13425-144D5;0.168596!13433-144E4;0.215618!13437-144E8;0.249387!11904-125F5;0.141765!11905-125F6;0.433736!10039-101F3;0.401784!10791-110H8;0.19642!10017-101C8;0.555466!10045-101F9;0.306623!10509-107D5;0.580508!10839-111E2;0.00905001!10692-109F8;0.289964!10079-102A7;0.544124!10078-102A6;0.00607581!10721-110A1;0.0764503!10569-108B2;0.654111!10570-108B3;0.834661!10571-108B4;0.682869!10647-109A8;0.820499!10752-110D5;0.0382147!10782-110G8;0.121803!10726-110A6;0.380694!10018-101C9;0.032073!10086-102B5;0.366307!10182-103D2;0.151559!10165-103B3;0.013882!10499-107C4;0.0505392!10408-106B3;0.453681!10019-101D1;0.332129!10068-101I5;0.253078!10075-102A3;0.122207!10077-102A5;0.156768!10727-110A7;0.761023!10775-110G1;0.145113!10412-106B7;0.788478!12231-129F8;0.610468!12232-129F9;0.182848!12233-129G1;0.124287!12234-129G2;0.0569451!10414-106B9;0.0382531!10170-103B8;0.251261!10183-103D3;0.192251!10150-102I6;0.116082!10174-103C3;0.217299!10155-103A2;0.0145924!10038-101F2;0.0650822!10838-111E1;0.0428736!10759-110E3;0.87837!10514-107E1;0.0213441!10465-106H6;0.161505!10691-109F7;0.255375!10843-111E6;0.306702!10844-111E7;0.5075!11747-123G1;0.747332!11748-123G2;0.613811!11749-123G3;0.456747!11750-123G4;0.395438!11751-123G5;0.533253!11840-124H4;0.49277!11752-123G6;0.59094!11753-123G7;0.887192!11754-123G8;0.761903!11755-123G9;0.987236!11756-123H1;0.581013!11833-124G6;0.473286!11760-123H5;0.202128!11836-124G9;0.365563!11758-123H3;0.299153!11835-124G8;0.762972!11762-123H7;0.434858!11838-124H2;0.988856!11757-123H2;0.948771!11759-123H4;0.572416!11761-123H6;0.467008!11842-124H6;0.940028!11837-124H1;0.983593!10568-108B1;0.491649!13230-141I8;0.751464!13231-141I9;0.656321!10696-109G3;0.91163!10493-107B7;0.938812!10494-107B8;0.113068!10850-111F4;0.900764!10851-111F5;0.060244!10852-111F6;0.510097!10853-111F7;0.102948!10854-111F8;0.269286!10855-111F9;0.0015387!10856-111G1;0.922759!10847-111F1;0.255369!10846-111E9;0.502183!10848-111F2;0.468735!10845-111E8;0.557745!10857-111G2;0.465917!10858-111G3;0.705653!10156-103A3;0.219651!11901-125F2;0.269336!11902-125F3;0.704269!11903-125F4;0.455232!10689-109F5;0.426487!10648-109A9;0.108275!10784-110H1;0.115048!10744-110C6;0.150815!10772-110F7;0.0894925!10474-106I6;0.639895!10600-108E6;0.15801!10684-109E9;0.709536!12226-129F3;0.245935!12227-129F4;0.959405!10508-107D4;0.0898671!10539-107G8;0.115793!10607-108F4;0.645676!10555-107I6;0.751475!10774-110F9;0.027281!10637-108I7;0.86628!10663-109C6;0.179435!10728-110A8;0.923539!10729-110A9;0.830661!10430-106D7;0.841745!10730-110B1;0.774231!10813-111B3;0.603331!10812-111B2;0.707191!10037-101F1;0.0401806!10172-103C1;0.123047!10163-103B1;0.199284!10076-102A4;0.215137!10073-102A1;0.206383!10036-101E9;0.211513!10195-103E6;0.335833!10277-104E7;0.14433!10434-106E2;0.0560693!10550-107I1;0.0290487!10545-107H5;0.886523!10544-107H4;0.855774!10704-109H2;0.850451!10510-107D6;0.0126053!10558-107I9;0.628331!10020-101D2;0.653021!10732-110B3;0.105342!10049-101G4;0.0175651!10698-109G5;0.315295!10437-106E5;0.798252!10417-106C3;0.00222693!10035-101E8;0.529109!10171-103B9;0.204251!10157-103A4;0.119878!10034-101E7;0.240637!10072-101I9;0.199775!10199-103F1;0.262062!10200-103F2;0.0977382!10697-109G4;0.0214122!10723-110A3;0.773161!10179-103C8;0.268992!10160-103A7;0.0482695!10180-103C9;0.111212!10162-103A9;0.200576!10021-101D3;0.263005!10840-111E3;0.20812!10706-109H4;0.204621!10033-101E6;0.395035!10032-101E5;0.0507629!10490-107B4;0.263536!10439-106E7;0.38023!10022-101D4;0.649556!10176-103C5;0.0201546!10469-106I1;0.148198!10067-101I4;0.257308!10411-106B6;0.0140948!10471-106I3;0.937014!10030-101E3;0.802967!10475-106I7;0.211261!10787-110H4;0.564826!10477-106I9;0.59982!10695-109G2;0.355108!11771-123I7;0.981329!11772-123I8;0.634755!11773-123I9;0.766997!10093-102C3;0.478124!10442-106F1;0.0244147!10442-106F1;0.467957!10201-103F3;0.514727!10639-108I9;0.149656!11843-124H7;0.884708!11841-124H5;0.3421!10693-109F9;0.223574!10436-106E4;0.330504!10483-107A6;0.0110806!10282-104F3;0.887871!10023-101D5;0.017397!10066-101I3;0.032901!10065-101I2;0.160351!10800-110I8;0.00285845!10610-108F7;0.348201!10841-111E4;0.694914!10541-107H1;0.367545!10842-111E5;0.840804!10562-108A4;0.278352!10024-101D6;0.974989!10064-101I1;0.320343!10609-108F6;0.0722029!10048-101G3;0.853915!10781-110G7;0.0537957!10181-103D1;0.999673!10159-103A6;0.00509646!10056-101H2;0.0220521!10737-110B8;0.0107735!10025-101D7;0.481019!10044-101F8;0.923193!10424-106D1;0.862147!10463-106H4;0.0203716!10616-108G4;0.573199!10486-107A9;0.040716!10062-101H8;0.540951!10202-103F4;0.0150953!10158-103A5;0.00900161!10441-106E9;0.0468294!10031-101E4;0.576513!10063-101H9;0.2959!10063-101H9;0.443823!11763-123H8;0.01287!11765-123I1;0.88168!11768-123I4;0.604164!10807-111A6;0.752042!10790-110H7;0.60767!10798-110I6;0.494457!10786-110H3;0.469771!10591-108D6;0.520732!10593-108D8;0.338356!10590-108D5;0.0613165!10026-101D8;0.454015!10096-102C6;0.171757!10168-103B6;0.427742!10154-103A1;0.0206881!10209-103G2;0.0908119!10061-101H7;0.00619856!10027-101D9;0.0399209!10043-101F7;0.792738!10783-110G9;0.546496!10028-101E1;0.00103253!10060-101H6;0.628839!10203-103F5;0.152327!10059-101H5;0.00670274!10047-101G2;0.00588881!10029-101E2;0.183285!10058-101H4;0.0125653!10418-106C4;0.0218353!10492-107B6;0.256992!10694-109G1;0.0950175!10797-110I5;0.772545!10057-101H3;0.206936!10100-102D1;0.00517635!10055-101H1;0.0521784!10204-103F6;0.0603601!10191-103E2;0.0898005!10563-108A5;0.0195404
|name=TKAAAGBGRCA,motif293,CNhs10642,T:443.0(12.92%),B:4346.9(6.80%),P:1e-36
|name=TKAAAGBGRCA,motif293,CNhs10642,T:443.0(12.92%),B:4346.9(6.80%),P:1e-36
|tomtom_result=Dof3#MA0021.1;-2;0.000198816;0.0946365;0.188626;6;TTAAAGCGACA;AAAGCG;+!PBF#MA0064.1;-2;0.000618311;0.294316;0.199896;5;TTAAAGCGACA;AAAGC;+!id1#MA0120.1;0;0.000645761;0.307382;0.199896;11;TTAAAGCGACA;CGAAAAGGAAAA;-!MNB1A#MA0053.1;-2;0.000847002;0.403173;0.199896;5;TTAAAGCGACA;AAAGC;+!Dof2#MA0020.1;-2;0.00120325;0.572748;0.199896;6;TTAAAGCGACA;AAAGCA;+!IRF2#MA0051.1;6;0.00126417;0.601747;0.199896;11;TTAAAGCGACA;GGAAAGCGAAACCAAAAC;+!RME1#MA0370.1;1;0.00165288;0.786769;0.224022;9;TTAAAGCGACA;TCCAAAGGAA;+!IRF1#MA0050.1;-1;0.00267197;1.27186;0.316877;10;TTAAAGCGACA;GAAAGCGAAACC;+!SMP1#MA0383.1;11;0.00523301;2.49091;0.538297;10;TTAAAGCGACA;TGCTAATTTAATTATAGGTAA;-!TBP#MA0108.2;3;0.00651481;3.10105;0.538297;11;TTAAAGCGACA;GTATAAAAGGCGGGG;+!TBP#MA0108.2;3;0.00651481;3.10105;0.538297;11;TTAAAGCGACA;GTATAAAAGGCGGGG;+!ABF1#MA0265.1;4;0.00952742;4.53505;0.695314;11;TTAAAGCGACA;TCGTATAAAGTGATAA;+
}}
}}

Latest revision as of 14:06, 7 September 2012

Full Name: TKAAAGBGRCA,motif293,CNhs10642,T:443.0(12.92%),B:4346.9(6.80%),P:1e-36

Motif matrix
POACGT
138.098126.6980.443277.761
252.71737.655166.568185.617
3346.8690.44395.2450.443
4420.850.4430.88620.821
5324.71922.1595.6880.443
60.4430.443441.6710.443
773.538146.19133.78689.486
858.03386.828206.88191.258
9250.2954.43187.8320.443
10181.187260.9270.4430.443
11217.513113.85162.90648.287

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Dof3#MA0021.1-20.0001988160.09463650.1886266TTAAAGCGACAAAAGCG+
PBF#MA0064.1-20.0006183110.2943160.1998965TTAAAGCGACAAAAGC+
id1#MA0120.100.0006457610.3073820.19989611TTAAAGCGACACGAAAAGGAAAA-
MNB1A#MA0053.1-20.0008470020.4031730.1998965TTAAAGCGACAAAAGC+
Dof2#MA0020.1-20.001203250.5727480.1998966TTAAAGCGACAAAAGCA+
IRF2#MA0051.160.001264170.6017470.19989611TTAAAGCGACAGGAAAGCGAAACCAAAAC+
RME1#MA0370.110.001652880.7867690.2240229TTAAAGCGACATCCAAAGGAA+
IRF1#MA0050.1-10.002671971.271860.31687710TTAAAGCGACAGAAAGCGAAACC+
SMP1#MA0383.1110.005233012.490910.53829710TTAAAGCGACATGCTAATTTAATTATAGGTAA-
TBP#MA0108.230.006514813.101050.53829711TTAAAGCGACAGTATAAAAGGCGGGG+
TBP#MA0108.230.006514813.101050.53829711TTAAAGCGACAGTATAAAAGGCGGGG+
ABF1#MA0265.140.009527424.535050.69531411TTAAAGCGACATCGTATAAAGTGATAA+
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