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MacroAPE 1083:6-TDTAAWSAG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;34.067;21.516;627.55;1109.867!2;459.008;324.533;407.011;602.448!3;518.177;435.699;50.204;788.92!4;1787.621;1.793;1.793;1.793!5;1710.522;28.6...")
 
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6H5;0.527675!10827-111C8;0.509267!10789-110H6;0.410078!10828-111C9;0.870897!10788-110H5;0.605591!10792-110H9;0.538839!10765-110E9;0.249414!10829-111D1;0.432888!10830-111D2;0.540535!10831-111D3;0.121226!10832-111D4;0.815791!10833-111D5;0.637944!10764-110E8;0.54597!10770-110F5;0.75396!10399-106A3;0.611783!10400-106A4;0.375479!10405-106A9;0.357722!10834-111D6;0.362765!10835-111D7;0.367875!10836-111D8;0.30137!10837-111D9;0.828396!10699-109G6;0.291335!10802-111A1;0.37648!10796-110I4;0.383195!10010-101C1;0.0951522!10810-111A9;0.944853!10421-106C7;0.964834!10708-109H6;0.38612!12235-129G3;0.286752!12236-129G4;0.257322!12237-129G5;0.790074!10167-103B5;0.0411896!10151-102I7;0.445746!10428-106D5;0.366117!10795-110I3;0.983323!10805-111A4;0.135078!10052-101G7;0.74837!10189-103D9;0.54784!10589-108D4;0.608205!10425-106D2;0.326763!10427-106D4;0.669518!10702-109G9;0.323678!10432-106D9;0.128277!10496-107C1;0.0288812!10718-109I7;0.251658!10011-101C2;0.477009!10053-101G8;0.505095!10686-109F2;0.330891!10084-102B3;0.869966!10012-101C3;0.34406!10085-102B4;0.306109!10482-107A5;0.321104!10419-106C5;0.194772!10080-102A8;0.111309!10760-110E4;0.152334!10709-109H7;0.390316!10710-109H8;0.0588563!10703-109H1;0.513418!10719-109I8;0.428918!10642-109A3;0.424909!10177-103C6;0.343467!10164-103B2;0.279157!10173-103C2;0.266392!10166-103B4;0.330292!10083-102B2;0.315467!10188-103D8;0.326169!10552-107I3;0.332338!10553-107I4;0.668719!10013-101C4;0.202469!10536-107G5;0.265024!10618-108G6;0.0661711!10423-106C9;0.854945!10785-110H2;0.859661!12238-129G6;0.494911!12239-129G7;0.912316!12240-129G8;0.576269!10416-106C2;0.143509!10801-110I9;0.556146!10766-110F1;0.514587!10824-111C5;0.353203!10825-111C6;0.438132!10826-111C7;0.493285!10454-106G4;0.48684!10409-106B4;0.613509!10638-108I8;0.993479!10636-108I6;0.306848!10513-107D9;0.0578623!10420-106C6;0.0391835!10082-102B1;0.350334!10014-101C5;0.159921!10070-101I7;0.310546!10452-106G2;0.303982!10453-106G3;0.776226!10449-106F8;0.550019!10042-101F6;0.569522!10069-101I6;0.266811!10193-103E4;0.756166!10631-108I1;0.317998!10438-106E6;0.49297!10488-107B2;0.0460786!10196-103E7;0.581203!10071-101I8;0.780428!10071-101I8;0.229126!10041-101F5;0.250681!10451-106G1;0.32476!10450-106F9;0.746039!10604-108F1;0.557149!10605-108F2;0.531594!10606-108F3;0.887344!10603-108E9;0.686929!10497-107C2;0.947764!10448-106F7;0.690622!10643-109A4;0.815482!10426-106D3;0.291758!10431-106D8;0.0804937!10197-103E8;0.190615!10443-106F2;0.784128!10815-111B5;0.675544!10816-111B6;0.974097!10817-111B7;0.802829!10015-101C6;0.957676!10410-106B5;0.210933!10054-101G9;0.718522!10758-110E2;0.201938!10711-109H9;0.0220928!10040-101F4;0.522052!10470-106I2;0.407137!10415-106C1;0.302698!10198-103E9;0.618855!10614-108G2;0.224887!10612-108F9;0.830906!10549-107H9;0.0865479!10615-108G3;0.28919!10487-107B1;0.589314!10433-106E1;0.741415!10688-109F4;0.653968!10444-106F3;0.474963!10444-106F3;0.645347!10485-107A8;0.829399!10413-106B8;0.14631!10175-103C4;0.3677!10161-103A8;0.310825!12131-128D7;0.188712!10624-108H3;0.282526!10712-109I1;0.840978!10205-103F7;0.108389!10206-103F8;0.729041!10207-103F9;0.958354!10050-101G5;0.900243!10051-101G6;0.185845!10016-101C7;0.971089!10046-101G1;0.77695!10778-110G4;0.21395!10633-108I3;0.310783!10818-111B8;0.0450649!10819-111B9;0.33604!10820-111C1;0.357175!10484-107A7;0.285109!10808-111A7;0.819179!10169-103B7;0.479073!10153-102I9;0.544717!13425-144D5;0.310344!13433-144E4;0.0733534!13437-144E8;0.111166!11904-125F5;0.200596!11905-125F6;0.472558!10039-101F3;0.570124!10791-110H8;0.394307!10017-101C8;0.74747!10045-101F9;0.252464!10509-107D5;0.073728!10839-111E2;0.730973!10692-109F8;0.373903!10079-102A7;0.257002!10078-102A6;0.727725!10721-110A1;0.545534!10569-108B2;0.358318!10570-108B3;0.688666!10571-108B4;0.375238!10647-109A8;0.921277!10752-110D5;0.191122!10782-110G8;0.868087!10726-110A6;0.34459!10018-101C9;0.570366!10086-102B5;0.819763!10182-103D2;0.217496!10165-103B3;0.317058!10499-107C4;0.281979!10408-106B3;0.29299!10019-101D1;0.0647714!10068-101I5;0.281688!10075-102A3;0.348069!10077-102A5;0.461355!10727-110A7;0.33408!10775-110G1;0.243593!10412-106B7;0.275812!12231-129F8;0.368427!12232-129F9;0.723311!12233-129G1;0.541145!12234-129G2;0.86034!10414-106B9;0.907353!10170-103B8;0.0382683!10183-103D3;0.529458!10150-102I6;0.485463!10174-103C3;0.368631!10155-103A2;0.319513!10038-101F2;0.160502!10838-111E1;0.250295!10759-110E3;0.620027!10514-107E1;0.743952!10465-106H6;0.542381!10691-109F7;0.628318!10843-111E6;0.0514588!10844-111E7;0.350049!11747-123G1;0.155024!11748-123G2;0.585887!11749-123G3;0.853509!11750-123G4;0.350434!11751-123G5;0.621673!11840-124H4;0.304377!11752-123G6;0.330016!11753-123G7;0.214098!11754-123G8;0.700206!11755-123G9;0.859427!11756-123H1;0.927187!11833-124G6;0.520133!11760-123H5;0.0681314!11836-124G9;0.514638!11758-123H3;0.656839!11835-124G8;0.585932!11762-123H7;0.611567!11838-124H2;0.102534!11757-123H2;0.301888!11759-123H4;0.419935!11761-123H6;0.501875!11842-124H6;0.391576!11837-124H1;0.625928!10568-108B1;0.469923!13230-141I8;0.935874!13231-141I9;0.575646!10696-109G3;0.432283!10493-107B7;0.611411!10494-107B8;0.175625!10850-111F4;0.443663!10851-111F5;0.290467!10852-111F6;0.862451!10853-111F7;0.947296!10854-111F8;0.644933!10855-111F9;0.992389!10856-111G1;0.404628!10847-111F1;0.240826!10846-111E9;0.598123!10848-111F2;0.585061!10845-111E8;0.225095!10857-111G2;0.955865!10858-111G3;0.25557!10156-103A3;0.201548!11901-125F2;0.396544!11902-125F3;0.0839083!11903-125F4;0.0539!10689-109F5;0.0542128!10648-109A9;0.609369!10784-110H1;0.569793!10744-110C6;0.342634!10772-110F7;0.347888!10474-106I6;0.828142!10600-108E6;0.296333!10684-109E9;0.9738!12226-129F3;0.545098!12227-129F4;0.73678!10508-107D4;0.32027!10539-107G8;0.627172!10607-108F4;0.333073!10555-107I6;0.693708!10774-110F9;0.481783!10637-108I7;0.88156!10663-109C6;0.830257!10728-110A8;0.913582!10729-110A9;0.712362!10430-106D7;0.317873!10730-110B1;0.70643!10813-111B3;0.374043!10812-111B2;0.330268!10037-101F1;0.675716!10172-103C1;0.365283!10163-103B1;0.372196!10076-102A4;0.278456!10073-102A1;0.472399!10036-101E9;0.365368!10195-103E6;0.335154!10277-104E7;0.471974!10434-106E2;0.45249!10550-107I1;0.725085!10545-107H5;0.131737!10544-107H4;0.592314!10704-109H2;0.558893!10510-107D6;0.287598!10558-107I9;0.0113499!10020-101D2;0.793689!10732-110B3;0.736129!10049-101G4;0.214622!10698-109G5;0.364077!10437-106E5;0.770052!10417-106C3;0.882518!10035-101E8;0.00369413!10171-103B9;0.33517!10157-103A4;0.404823!10034-101E7;0.365792!10072-101I9;0.316093!10199-103F1;0.23845!10200-103F2;0.208!10697-109G4;0.708979!10723-110A3;0.28886!10179-103C8;0.246098!10160-103A7;0.813937!10180-103C9;0.841646!10162-103A9;0.515543!10021-101D3;0.409359!10840-111E3;0.319433!10706-109H4;0.353279!10033-101E6;0.478501!10032-101E5;0.241286!10490-107B4;0.368508!10439-106E7;0.634939!10022-101D4;0.00959405!10176-103C5;0.329147!10469-106I1;0.278312!10067-101I4;0.0211355!10411-106B6;0.309175!10471-106I3;0.173588!10030-101E3;0.328304!10475-106I7;0.133615!10787-110H4;0.79013!10477-106I9;0.915525!10695-109G2;0.333661!11771-123I7;0.81183!11772-123I8;0.362837!11773-123I9;0.597548!10093-102C3;0.985497!10442-106F1;0.121897!10442-106F1;0.818562!10201-103F3;0.810897!10639-108I9;0.51496!11843-124H7;0.34425!11841-124H5;0.21068!10693-109F9;0.692366!10436-106E4;0.701404!10483-107A6;0.191737!10282-104F3;0.689163!10023-101D5;0.0180221!10066-101I3;0.105183!10065-101I2;0.636337!10800-110I8;0.240429!10610-108F7;0.139257!10841-111E4;0.0129592!10541-107H1;0.52392!10842-111E5;0.0183472!10562-108A4;0.709105!10024-101D6;0.123719!10064-101I1;0.42468!10609-108F6;0.183617!10048-101G3;0.276808!10781-110G7;0.808843!10181-103D1;0.477941!10159-103A6;0.377393!10056-101H2;0.28277!10737-110B8;0.2227!10025-101D7;0.620967!10044-101F8;0.862177!10424-106D1;0.3995!10463-106H4;0.158852!10616-108G4;0.730733!10486-107A9;0.447628!10062-101H8;0.766778!10202-103F4;0.357978!10158-103A5;0.632796!10441-106E9;0.221131!10031-101E4;0.32501!10063-101H9;0.332009!10063-101H9;0.295783!11763-123H8;0.278528!11765-123I1;0.856124!11768-123I4;0.970002!10807-111A6;0.76422!10790-110H7;0.0380898!10798-110I6;0.345026!10786-110H3;0.0148525!10591-108D6;0.221715!10593-108D8;0.0841467!10590-108D5;0.31468!10026-101D8;0.157261!10096-102C6;0.104678!10168-103B6;0.00698882!10154-103A1;0.312703!10209-103G2;0.222059!10061-101H7;0.378956!10027-101D9;0.205381!10043-101F7;0.896367!10783-110G9;0.291272!10028-101E1;0.853635!10060-101H6;0.184507!10203-103F5;0.396969!10059-101H5;0.490792!10047-101G2;0.572003!10029-101E2;0.26159!10058-101H4;0.202175!10418-106C4;0.29351!10492-107B6;0.0581014!10694-109G1;0.67909!10797-110I5;0.362491!10057-101H3;0.662057!10100-102D1;0.47988!10055-101H1;0.774461!10204-103F6;0.174077!10191-103E2;0.539027!10563-108A5;0.943462
|name=6-TDTAAWSAG,CNhs10617,BestGuess:LHX2_f1_HM09(0.718814801443063),T:1793.0(48.64%),B:17545.0(39.42%),P:1e-29
|name=6-TDTAAWSAG,CNhs10617,BestGuess:LHX2_f1_HM09(0.718814801443063),T:1793.0(48.64%),B:17545.0(39.42%),P:1e-29
|tomtom_result=Vsx2#MA0180.1;0;0.00174071;0.828577;0.962327;9;TTTAATCAG;TTTAATTAG;+!SMP1#MA0383.1;10;0.00726519;3.45823;0.962327;9;TTTAATCAG;TTACCTATAATTAAATTAGCA;+!Oct#MA0197.1;0;0.00824514;3.92469;0.962327;8;TTTAATCAG;TTTAATTA;+!RORA_2#MA0072.1;0;0.0111704;5.31711;0.962327;9;TTTAATCAG;TATAAGTAGGTCAA;+!nub#MA0453.1;3;0.0127055;6.0478;0.962327;9;TTTAATCAG;TATGCAAATTAG;+!Tcfcp2l1#MA0145.1;5;0.0145518;6.92666;0.962327;9;TTTAATCAG;CCAGTTCAAACCAG;+!ems#MA0219.1;-1;0.0190734;9.07894;0.962327;7;TTTAATCAG;TTAATGA;+!myb.Ph3#MA0054.1;-3;0.0197659;9.40856;0.962327;6;TTTAATCAG;AAACGGTTA;-
}}
}}

Latest revision as of 14:13, 7 September 2012

Full Name: 6-TDTAAWSAG,CNhs10617,BestGuess:LHX2_f1_HM09(0.718814801443063),T:1793.0(48.64%),B:17545.0(39.42%),P:1e-29

Motif matrix
POACGT
134.06721.516627.551109.867
2459.008324.533407.011602.448
3518.177435.69950.204788.92
41787.6211.7931.7931.793
51710.52228.6881.79351.997
6541.486279.708229.504742.302
71.793840.917731.544218.746
8909.0511.793530.728351.428
91.7931.7931787.6211.793

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Vsx2#MA0180.100.001740710.8285770.9623279TTTAATCAGTTTAATTAG+
SMP1#MA0383.1100.007265193.458230.9623279TTTAATCAGTTACCTATAATTAAATTAGCA+
Oct#MA0197.100.008245143.924690.9623278TTTAATCAGTTTAATTA+
RORA_2#MA0072.100.01117045.317110.9623279TTTAATCAGTATAAGTAGGTCAA+
nub#MA0453.130.01270556.04780.9623279TTTAATCAGTATGCAAATTAG+
Tcfcp2l1#MA0145.150.01455186.926660.9623279TTTAATCAGCCAGTTCAAACCAG+
ems#MA0219.1-10.01907349.078940.9623277TTTAATCAGTTAATGA+
myb.Ph3#MA0054.1-30.01976599.408560.9623276TTTAATCAGAAACGGTTA-
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