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MacroAPE 1083:CACTTCCTTCCT,motif281: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;79.206;177.446;31.007;19.341!2;201.085;30.393;15.043;60.479!3;44.515;218.891;27.937;15.657!4;38.682;38.068;11.666;218.584!5;16.885;39.296;19...")
 
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34!12182-129A4;0.00801631!12183-129A5;0.00518642!12184-129A6;0.00871178!10809-111A8;0.00370934!10597-108E3;0.00136099!10717-109I6;1.14922e-05!10455-106G5;0.379012!10534-107G3;0.576025!10429-106D6;0.624649!10464-106H5;0.222466!10827-111C8;0.272175!10789-110H6;0.30763!10828-111C9;0.0857038!10788-110H5;0.0799781!10792-110H9;0.340364!10765-110E9;0.313193!10829-111D1;0.31168!10830-111D2;0.459785!10831-111D3;0.174112!10832-111D4;0.101662!10833-111D5;0.507476!10764-110E8;0.421316!10770-110F5;0.213825!10399-106A3;0.0634639!10400-106A4;0.431209!10405-106A9;0.38665!10834-111D6;0.321485!10835-111D7;0.115466!10836-111D8;0.0637128!10837-111D9;0.224731!10699-109G6;0.987451!10802-111A1;0.55123!10796-110I4;0.598832!10010-101C1;0.0688717!10810-111A9;0.0113616!10421-106C7;1.11162e-13!10708-109H6;0.97129!12235-129G3;0.0770527!12236-129G4;0.28159!12237-129G5;0.821308!10167-103B5;0.0136319!10151-102I7;0.152071!10428-106D5;0.30204!10795-110I3;0.730979!10805-111A4;0.608367!10052-101G7;2.04551e-07!10189-103D9;0.0990742!10589-108D4;1.87656e-05!10425-106D2;1.3628e-06!10427-106D4;0.00669847!10702-109G9;0.941579!10432-106D9;0.481113!10496-107C1;0.340933!10718-109I7;0.23721!10011-101C2;0.193242!10053-101G8;0.0592625!10686-109F2;0.00540108!10084-102B3;0.755539!10012-101C3;0.228411!10085-102B4;0.310064!10482-107A5;0.0939121!10419-106C5;0.092777!10080-102A8;0.0465292!10760-110E4;0.0392146!10709-109H7;0.2737!10710-109H8;0.152955!10703-109H1;0.110113!10719-109I8;0.00231038!10642-109A3;2.55424e-06!10177-103C6;0.000624653!10164-103B2;0.108723!10173-103C2;0.16129!10166-103B4;0.0238446!10083-102B2;0.0673609!10188-103D8;0.0436728!10552-107I3;0.222822!10553-107I4;0.000282036!10013-101C4;0.0195879!10536-107G5;0.259849!10618-108G6;0.105723!10423-106C9;0.181296!10785-110H2;0.271614!12238-129G6;0.112821!12239-129G7;0.0757832!12240-129G8;0.285217!10416-106C2;8.65219e-05!10801-110I9;0.668291!10766-110F1;0.628289!10824-111C5;0.464744!10825-111C6;0.000335495!10826-111C7;0.000887271!10454-106G4;0.000992177!10409-106B4;0.000448043!10638-108I8;0.782242!10636-108I6;0.132434!10513-107D9;0.060122!10420-106C6;0.000710842!10082-102B1;1.04039e-07!10014-101C5;0.0628882!10070-101I7;0.100659!10452-106G2;0.144482!10453-106G3;0.164386!10449-106F8;0.386384!10042-101F6;0.422723!10069-101I6;0.297509!10193-103E4;0.928363!10631-108I1;0.0784811!10438-106E6;0.703852!10488-107B2;0.0176326!10196-103E7;0.000362143!10071-101I8;0.575456!10071-101I8;0.411182!10041-101F5;0.0469571!10451-106G1;0.000823077!10450-106F9;2.5916e-07!10604-108F1;7.54904e-08!10605-108F2;0.233996!10606-108F3;0.286138!10603-108E9;0.663048!10497-107C2;0.626681!10448-106F7;0.000959261!10643-109A4;0.306195!10426-106D3;0.385602!10431-106D8;0.789637!10197-103E8;0.0512198!10443-106F2;0.486279!10815-111B5;0.0499291!10816-111B6;0.00856814!10817-111B7;0.00498949!10015-101C6;0.00792299!10410-106B5;0.042368!10054-101G9;2.07184e-08!10758-110E2;0.735152!10711-109H9;0.743578!10040-101F4;0.804205!10470-106I2;0.153523!10415-106C1;0.0973726!10198-103E9;0.921671!10614-108G2;0.00701036!10612-108F9;0.00618084!10549-107H9;0.0126755!10615-108G3;3.57349e-06!10487-107B1;9.37377e-06!10433-106E1;0.159121!10688-109F4;0.40983!10444-106F3;0.704504!10444-106F3;0.0843409!10485-107A8;0.122413!10413-106B8;0.0774085!10175-103C4;0.00111919!10161-103A8;0.129097!12131-128D7;0.345131!10624-108H3;0.637763!10712-109I1;0.0605031!10205-103F7;0.752802!10206-103F8;0.807981!10207-103F9;0.559824!10050-101G5;0.490992!10051-101G6;0.928396!10016-101C7;0.974127!10046-101G1;0.884749!10778-110G4;0.557179!10633-108I3;0.874359!10818-111B8;1.72437e-09!10819-111B9;0.000339895!10820-111C1;0.000687951!10484-107A7;0.000428259!10808-111A7;0.00152291!10169-103B7;0.830367!10153-102I9;0.185722!13425-144D5;0.36698!13433-144E4;0.00175574!13437-144E8;7.2637e-05!11904-125F5;4.18596e-05!11905-125F6;0.101311!10039-101F3;0.15097!10791-110H8;0.211885!10017-101C8;0.160667!10045-101F9;0.417665!10509-107D5;0.957582!10839-111E2;0.0241878!10692-109F8;0.00503899!10079-102A7;0.273314!10078-102A6;0.524395!10721-110A1;0.79501!10569-108B2;0.000202858!10570-108B3;0.944477!10571-108B4;0.910231!10647-109A8;0.953284!10752-110D5;0.0585896!10782-110G8;0.261407!10726-110A6;0.00481899!10018-101C9;0.191138!10086-102B5;0.799218!10182-103D2;0.684105!10165-103B3;0.281325!10499-107C4;0.316377!10408-106B3;0.00101757!10019-101D1;0.708092!10068-101I5;2.11763e-06!10075-102A3;0.0758594!10077-102A5;3.40128e-06!10727-110A7;0.000354109!10775-110G1;0.380783!10412-106B7;0.365926!12231-129F8;0.995849!12232-129F9;0.0827084!12233-129G1;0.522696!12234-129G2;0.0759363!10414-106B9;0.000969282!10170-103B8;2.6551e-05!10183-103D3;0.11654!10150-102I6;0.151874!10174-103C3;0.302644!10155-103A2;0.379157!10038-101F2;0.454062!10838-111E1;0.608921!10759-110E3;1.90877e-06!10514-107E1;0.390292!10465-106H6;0.0409171!10691-109F7;0.00417238!10843-111E6;0.152948!10844-111E7;8.11157e-07!11747-123G1;8.48688e-05!11748-123G2;0.902252!11749-123G3;0.656663!11750-123G4;0.953652!11751-123G5;0.661806!11840-124H4;0.937137!11752-123G6;0.944484!11753-123G7;0.609956!11754-123G8;0.994606!11755-123G9;0.418487!11756-123H1;0.183368!11833-124G6;0.840835!11760-123H5;0.326824!11836-124G9;0.642187!11758-123H3;0.998837!11835-124G8;0.795677!11762-123H7;0.27525!11838-124H2;0.836415!11757-123H2;0.488755!11759-123H4;0.226526!11761-123H6;0.489781!11842-124H6;0.748045!11837-124H1;0.628088!10568-108B1;0.243282!13230-141I8;0.38104!13231-141I9;0.951551!10696-109G3;0.901327!10493-107B7;0.250577!10494-107B8;0.00871369!10850-111F4;9.49147e-05!10851-111F5;0.0418212!10852-111F6;0.867856!10853-111F7;0.0842748!10854-111F8;0.124146!10855-111F9;0.0970414!10856-111G1;0.582244!10847-111F1;0.400221!10846-111E9;0.11141!10848-111F2;0.790946!10845-111E8;0.411737!10857-111G2;0.00163172!10858-111G3;0.0439741!10156-103A3;0.898344!11901-125F2;0.316726!11902-125F3;0.951004!11903-125F4;0.809481!10689-109F5;0.867108!10648-109A9;0.0241177!10784-110H1;0.0125891!10744-110C6;0.478635!10772-110F7;0.405359!10474-106I6;0.0916365!10600-108E6;0.561987!10684-109E9;0.0350152!12226-129F3;0.935792!12227-129F4;0.0320262!10508-107D4;0.741109!10539-107G8;0.000753916!10607-108F4;0.00443519!10555-107I6;0.00020544!10774-110F9;0.00124195!10637-108I7;1.49122e-06!10663-109C6;2.12599e-05!10728-110A8;0.000306778!10729-110A9;1.12374e-08!10430-106D7;0.734741!10730-110B1;0.209904!10813-111B3;0.00018042!10812-111B2;0.544866!10037-101F1;0.775197!10172-103C1;0.168242!10163-103B1;0.116174!10076-102A4;0.349725!10073-102A1;0.139169!10036-101E9;0.0252369!10195-103E6;0.239255!10277-104E7;0.236346!10434-106E2;0.0218216!10550-107I1;0.518807!10545-107H5;0.000790927!10544-107H4;0.316098!10704-109H2;0.294184!10510-107D6;0.451401!10558-107I9;0.231054!10020-101D2;0.00784266!10732-110B3;0.92806!10049-101G4;0.0688057!10698-109G5;0.151477!10437-106E5;0.0609853!10417-106C3;0.423745!10035-101E8;0.671821!10171-103B9;0.152491!10157-103A4;0.0754389!10034-101E7;0.239991!10072-101I9;0.191551!10199-103F1;0.033123!10200-103F2;0.00434298!10697-109G4;0.376424!10723-110A3;2.04986e-07!10179-103C8;0.921074!10160-103A7;0.048894!10180-103C9;0.0352999!10162-103A9;0.00548004!10021-101D3;0.0140153!10840-111E3;0.000685162!10706-109H4;0.721086!10033-101E6;0.622649!10032-101E5;0.192853!10490-107B4;0.216359!10439-106E7;0.0133491!10022-101D4;0.010558!10176-103C5;0.149284!10469-106I1;0.103037!10067-101I4;0.0470163!10411-106B6;0.835427!10471-106I3;0.102711!10030-101E3;0.000132903!10475-106I7;0.915092!10787-110H4;0.000168296!10477-106I9;3.4112e-10!10695-109G2;5.69078e-09!11771-123I7;0.848875!11772-123I8;0.0481719!11773-123I9;0.0224577!10093-102C3;0.0599853!10442-106F1;0.0187885!10442-106F1;0.646134!10201-103F3;0.781063!10639-108I9;0.237882!11843-124H7;0.0183626!11841-124H5;0.17728!10693-109F9;0.0490383!10436-106E4;0.0024934!10483-107A6;0.601433!10282-104F3;0.202034!10023-101D5;0.296842!10066-101I3;0.624108!10065-101I2;0.967748!10800-110I8;0.863621!10610-108F7;1.53221e-09!10841-111E4;0.000689695!10541-107H1;1.00253e-09!10842-111E5;0.00137058!10562-108A4;3.96773e-05!10024-101D6;0.000747497!10064-101I1;0.0138113!10609-108F6;0.447915!10048-101G3;0.0355341!10781-110G7;0.853072!10181-103D1;0.00250663!10159-103A6;0.321397!10056-101H2;0.5953!10737-110B8;0.214468!10025-101D7;0.662178!10044-101F8;1.67887e-05!10424-106D1;7.94329e-06!10463-106H4;0.947988!10616-108G4;0.373525!10486-107A9;0.368416!10062-101H8;0.710389!10202-103F4;0.439239!10158-103A5;0.00285979!10441-106E9;0.355064!10031-101E4;4.03108e-07!10063-101H9;0.278675!10063-101H9;0.032974!11763-123H8;0.256164!11765-123I1;0.297732!11768-123I4;0.706843!10807-111A6;0.690833!10790-110H7;0.000119957!10798-110I6;4.23586e-08!10786-110H3;0.00191524!10591-108D6;0.0222718!10593-108D8;0.00158736!10590-108D5;0.0058391!10026-101D8;0.000163719!10096-102C6;0.653139!10168-103B6;0.000655629!10154-103A1;0.0826698!10209-103G2;0.226052!10061-101H7;0.0883058!10027-101D9;0.936167!10043-101F7;0.242229!10783-110G9;0.0150216!10028-101E1;0.239895!10060-101H6;0.939259!10203-103F5;0.769197!10059-101H5;0.420295!10047-101G2;0.757629!10029-101E2;1.55092e-05!10058-101H4;0.000111321!10418-106C4;0.77862!10492-107B6;0.781427!10694-109G1;0.00227125!10797-110I5;0.472375!10057-101H3;0.546424!10100-102D1;0.834243!10055-101H1;0.413522!10204-103F6;0.907346!10191-103E2;0.137517!10563-108A5;0.000393362
|name=CACTTCCTTCCT,motif281,CNhs13543,T:307.0(5.30%),B:1859.8(2.33%),P:1e-37
|name=CACTTCCTTCCT,motif281,CNhs13543,T:307.0(5.30%),B:1859.8(2.33%),P:1e-37
|tomtom_result=SPI1#MA0080.2;-1;1.68278e-05;0.00801002;0.016016;7;CACTTCCTTCCT;ACTTCCT;-!EWSR1-FLI1#MA0149.1;-1;0.000135781;0.0646318;0.0646154;11;CACTTCCTTCCT;CCTTCCTTCCTTCCTTCC;-!ELF5#MA0136.1;0;0.000281018;0.133765;0.0891538;9;CACTTCCTTCCT;TACTTCCTT;+!FEV#MA0156.1;-1;0.00242028;1.15205;0.57588;8;CACTTCCTTCCT;ATTTCCTG;-!SPI1#MA0080.2;-6;0.00406563;1.93524;0.7739;6;CACTTCCTTCCT;CTTCCG;-!GCR2#MA0305.1;-5;0.00594715;2.83084;0.943375;7;CACTTCCTTCCT;GCTTCCT;+!ETS1#MA0098.1;-2;0.0080288;3.82171;0.999747;6;CACTTCCTTCCT;CTTCCG;+!Klf4#MA0039.1;-5;0.0167425;7.96941;0.999747;7;CACTTCCTTCCT;CCTTCCTTTA;-!ELK1#MA0028.1;-2;0.0201452;9.5891;0.999747;10;CACTTCCTTCCT;CTTCCGGCTC;-
}}
}}

Latest revision as of 14:21, 7 September 2012

Full Name: CACTTCCTTCCT,motif281,CNhs13543,T:307.0(5.30%),B:1859.8(2.33%),P:1e-37

Motif matrix
POACGT
179.206177.44631.00719.341
2201.08530.39315.04360.479
344.515218.89127.93715.657
438.68238.06811.666218.584
516.88539.29619.341231.478
664.47193.71720.87627.937
738.375248.0564.60515.964
838.06831.9281.228235.776
920.56935.91963.856186.656
1031.928205.99737.76131.314
1127.323253.8894.60521.183
1214.42981.9699.21201.392

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPI1#MA0080.2-11.68278e-050.008010020.0160167CACTTCCTTCCTACTTCCT-
EWSR1-FLI1#MA0149.1-10.0001357810.06463180.064615411CACTTCCTTCCTCCTTCCTTCCTTCCTTCC-
ELF5#MA0136.100.0002810180.1337650.08915389CACTTCCTTCCTTACTTCCTT+
FEV#MA0156.1-10.002420281.152050.575888CACTTCCTTCCTATTTCCTG-
SPI1#MA0080.2-60.004065631.935240.77396CACTTCCTTCCTCTTCCG-
GCR2#MA0305.1-50.005947152.830840.9433757CACTTCCTTCCTGCTTCCT+
ETS1#MA0098.1-20.00802883.821710.9997476CACTTCCTTCCTCTTCCG+
Klf4#MA0039.1-50.01674257.969410.9997477CACTTCCTTCCTCCTTCCTTTA-
ELK1#MA0028.1-20.02014529.58910.99974710CACTTCCTTCCTCTTCCGGCTC-
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