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MacroAPE 1083:TGAATTGGCTG,motif563: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;18.432;33.12;50.688;185.76!2;0.288;24.192;263.232;0.288!3;153.504;38.592;31.968;63.936!4;259.488;0.288;12.672;15.552!5;0.288;41.76;0.288;245...")
 
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7;0.0101722!12177-128I8;0.00318073!12182-129A4;0.00507459!12183-129A5;0.0143508!12184-129A6;0.0146138!10809-111A8;0.0109199!10597-108E3;0.0383605!10717-109I6;0.458811!10455-106G5;0.707355!10534-107G3;0.171723!10429-106D6;0.456963!10464-106H5;0.544756!10827-111C8;0.229585!10789-110H6;0.116492!10828-111C9;0.10869!10788-110H5;0.324697!10792-110H9;0.161394!10765-110E9;0.153225!10829-111D1;0.032934!10830-111D2;0.0422875!10831-111D3;0.374184!10832-111D4;0.839135!10833-111D5;0.0704738!10764-110E8;0.0252914!10770-110F5;0.219921!10399-106A3;0.173428!10400-106A4;0.389151!10405-106A9;0.274023!10834-111D6;0.435739!10835-111D7;0.0688078!10836-111D8;0.903127!10837-111D9;0.649627!10699-109G6;0.8673!10802-111A1;0.706008!10796-110I4;0.963721!10010-101C1;0.697988!10810-111A9;0.921429!10421-106C7;0.347329!10708-109H6;0.0206648!12235-129G3;0.671979!12236-129G4;0.230555!12237-129G5;0.779647!10167-103B5;0.195587!10151-102I7;0.581382!10428-106D5;0.566729!10795-110I3;0.250625!10805-111A4;0.212264!10052-101G7;0.0569044!10189-103D9;0.086918!10589-108D4;0.408034!10425-106D2;0.499202!10427-106D4;0.24269!10702-109G9;0.3103!10432-106D9;0.428089!10496-107C1;0.468772!10718-109I7;0.103772!10011-101C2;0.0850795!10053-101G8;0.366163!10686-109F2;0.00451422!10084-102B3;0.00198907!10012-101C3;0.469941!10085-102B4;0.588916!10482-107A5;0.276232!10419-106C5;0.624091!10080-102A8;0.371722!10760-110E4;0.101798!10709-109H7;0.659752!10710-109H8;0.450013!10703-109H1;0.366418!10719-109I8;0.126913!10642-109A3;0.358027!10177-103C6;0.0299985!10164-103B2;0.789634!10173-103C2;0.728282!10166-103B4;0.759643!10083-102B2;0.550715!10188-103D8;0.464919!10552-107I3;0.419422!10553-107I4;0.704973!10013-101C4;0.803244!10536-107G5;0.252309!10618-108G6;0.512068!10423-106C9;0.348371!10785-110H2;0.20455!12238-129G6;0.399232!12239-129G7;0.820599!12240-129G8;0.399283!10416-106C2;0.680576!10801-110I9;0.318851!10766-110F1;0.0822562!10824-111C5;0.390525!10825-111C6;0.854524!10826-111C7;0.88296!10454-106G4;0.899045!10409-106B4;0.899591!10638-108I8;0.593168!10636-108I6;0.818749!10513-107D9;0.0484744!10420-106C6;0.137518!10082-102B1;0.775297!10014-101C5;0.138066!10070-101I7;0.291514!10452-106G2;0.565404!10453-106G3;0.579726!10449-106F8;0.631193!10042-101F6;0.533536!10069-101I6;0.293259!10193-103E4;0.363471!10631-108I1;0.45457!10438-106E6;0.380416!10488-107B2;0.431628!10196-103E7;0.159045!10071-101I8;0.00464597!10071-101I8;0.307!10041-101F5;0.138337!10451-106G1;0.853429!10450-106F9;0.169723!10604-108F1;0.0669362!10605-108F2;0.0377753!10606-108F3;0.0769027!10603-108E9;0.169454!10497-107C2;0.16922!10448-106F7;0.267416!10643-109A4;0.885319!10426-106D3;0.0578186!10431-106D8;0.389195!10197-103E8;0.679111!10443-106F2;0.16952!10815-111B5;0.742551!10816-111B6;0.604383!10817-111B7;0.547345!10015-101C6;0.471!10410-106B5;0.228772!10054-101G9;0.189416!10758-110E2;0.307049!10711-109H9;0.244777!10040-101F4;0.569831!10470-106I2;0.63586!10415-106C1;0.949425!10198-103E9;0.195323!10614-108G2;0.388665!10612-108F9;0.458918!10549-107H9;0.431632!10615-108G3;0.135396!10487-107B1;0.879604!10433-106E1;0.0146821!10688-109F4;0.113192!10444-106F3;0.492125!10444-106F3;0.0863982!10485-107A8;0.229529!10413-106B8;0.164514!10175-103C4;0.0385545!10161-103A8;0.432018!12131-128D7;0.465087!10624-108H3;0.104637!10712-109I1;2.16672e-05!10205-103F7;0.591116!10206-103F8;0.094195!10207-103F9;0.0630704!10050-101G5;0.75025!10051-101G6;0.0574504!10016-101C7;0.230172!10046-101G1;0.160396!10778-110G4;0.00753524!10633-108I3;0.192057!10818-111B8;0.0552207!10819-111B9;0.697218!10820-111C1;0.669828!10484-107A7;0.769496!10808-111A7;0.669265!10169-103B7;0.938212!10153-102I9;0.832603!13425-144D5;0.478793!13433-144E4;0.00550146!13437-144E8;0.0286413!11904-125F5;0.0244351!11905-125F6;0.241237!10039-101F3;0.488622!10791-110H8;0.486639!10017-101C8;0.121409!10045-101F9;0.771712!10509-107D5;0.198547!10839-111E2;1.24079e-05!10692-109F8;0.967176!10079-102A7;0.628999!10078-102A6;0.0495179!10721-110A1;0.299903!10569-108B2;0.399307!10570-108B3;0.275346!10571-108B4;0.292188!10647-109A8;0.342346!10752-110D5;0.217661!10782-110G8;0.848552!10726-110A6;0.129815!10018-101C9;0.00534258!10086-102B5;0.196536!10182-103D2;0.412393!10165-103B3;0.311237!10499-107C4;0.455101!10408-106B3;0.24719!10019-101D1;0.580197!10068-101I5;0.827185!10075-102A3;0.794934!10077-102A5;0.898798!10727-110A7;0.0850018!10775-110G1;0.0797605!10412-106B7;0.499859!12231-129F8;0.152641!12232-129F9;0.827345!12233-129G1;0.691152!12234-129G2;0.474699!10414-106B9;0.617256!10170-103B8;0.406731!10183-103D3;0.658125!10150-102I6;0.686095!10174-103C3;0.583148!10155-103A2;0.414351!10038-101F2;0.303939!10838-111E1;0.291658!10759-110E3;0.188942!10514-107E1;0.411291!10465-106H6;0.119608!10691-109F7;0.0389313!10843-111E6;0.0110209!10844-111E7;0.334859!11747-123G1;0.201891!11748-123G2;0.0538888!11749-123G3;0.000379162!11750-123G4;0.124144!11751-123G5;0.0906404!11840-124H4;0.472074!11752-123G6;0.983634!11753-123G7;0.471731!11754-123G8;0.0806772!11755-123G9;0.0841215!11756-123H1;0.148431!11833-124G6;0.255965!11760-123H5;0.258448!11836-124G9;0.0589865!11758-123H3;0.297942!11835-124G8;0.149626!11762-123H7;0.150902!11838-124H2;0.0118623!11757-123H2;0.0788489!11759-123H4;0.00295647!11761-123H6;0.188116!11842-124H6;0.00212057!11837-124H1;0.344067!10568-108B1;0.299834!13230-141I8;0.0282128!13231-141I9;0.073233!10696-109G3;0.0466473!10493-107B7;0.00115166!10494-107B8;0.436528!10850-111F4;0.273937!10851-111F5;0.992611!10852-111F6;0.228059!10853-111F7;0.0463527!10854-111F8;0.357281!10855-111F9;0.422621!10856-111G1;0.241397!10847-111F1;0.133028!10846-111E9;0.466486!10848-111F2;0.860154!10845-111E8;0.873633!10857-111G2;0.334211!10858-111G3;0.344819!10156-103A3;0.385747!11901-125F2;0.570907!11902-125F3;0.312448!11903-125F4;0.135121!10689-109F5;0.312126!10648-109A9;0.368617!10784-110H1;0.23603!10744-110C6;0.101538!10772-110F7;0.00533447!10474-106I6;0.35729!10600-108E6;0.0218518!10684-109E9;0.858502!12226-129F3;0.0814026!12227-129F4;0.159784!10508-107D4;0.477136!10539-107G8;0.456464!10607-108F4;0.111661!10555-107I6;0.188213!10774-110F9;0.0128282!10637-108I7;0.9083!10663-109C6;0.358189!10728-110A8;0.803199!10729-110A9;0.751058!10430-106D7;0.0284986!10730-110B1;0.242229!10813-111B3;0.587575!10812-111B2;0.0172997!10037-101F1;0.201414!10172-103C1;0.535195!10163-103B1;0.688904!10076-102A4;0.529321!10073-102A1;0.578306!10036-101E9;0.280863!10195-103E6;0.433863!10277-104E7;0.484507!10434-106E2;0.173175!10550-107I1;0.787115!10545-107H5;0.910272!10544-107H4;0.406198!10704-109H2;0.0845059!10510-107D6;0.0320273!10558-107I9;0.773401!10020-101D2;0.0421556!10732-110B3;0.245006!10049-101G4;0.0839234!10698-109G5;0.51383!10437-106E5;0.651679!10417-106C3;0.395022!10035-101E8;0.134697!10171-103B9;0.56433!10157-103A4;0.714532!10034-101E7;0.650449!10072-101I9;0.535931!10199-103F1;0.223517!10200-103F2;0.569296!10697-109G4;0.218856!10723-110A3;0.910685!10179-103C8;0.700306!10160-103A7;0.233482!10180-103C9;0.322071!10162-103A9;0.368815!10021-101D3;0.421058!10840-111E3;0.977659!10706-109H4;0.470784!10033-101E6;0.82566!10032-101E5;0.411638!10490-107B4;0.46574!10439-106E7;0.945209!10022-101D4;0.977782!10176-103C5;0.491275!10469-106I1;0.748405!10067-101I4;0.869733!10411-106B6;0.0917038!10471-106I3;0.145331!10030-101E3;0.341174!10475-106I7;0.280669!10787-110H4;0.560521!10477-106I9;0.955269!10695-109G2;0.0188422!11771-123I7;0.698626!11772-123I8;0.370065!11773-123I9;0.308873!10093-102C3;0.499744!10442-106F1;0.626593!10442-106F1;0.233344!10201-103F3;0.172971!10639-108I9;0.0331805!11843-124H7;0.304404!11841-124H5;0.218227!10693-109F9;0.382935!10436-106E4;0.00633889!10483-107A6;0.259195!10282-104F3;0.887259!10023-101D5;0.989841!10066-101I3;0.977784!10065-101I2;0.197115!10800-110I8;0.0350772!10610-108F7;0.222872!10841-111E4;0.212011!10541-107H1;0.487652!10842-111E5;0.279451!10562-108A4;0.576076!10024-101D6;0.328242!10064-101I1;0.497848!10609-108F6;0.419104!10048-101G3;0.80389!10781-110G7;0.099318!10181-103D1;0.946341!10159-103A6;0.254239!10056-101H2;0.404543!10737-110B8;0.0543734!10025-101D7;0.118439!10044-101F8;0.759713!10424-106D1;0.432223!10463-106H4;0.507603!10616-108G4;0.0901021!10486-107A9;0.308456!10062-101H8;0.260521!10202-103F4;0.0144057!10158-103A5;0.768062!10441-106E9;0.502803!10031-101E4;0.196617!10063-101H9;0.482571!10063-101H9;0.330246!11763-123H8;0.263973!11765-123I1;0.39198!11768-123I4;0.448744!10807-111A6;0.0865714!10790-110H7;0.0291529!10798-110I6;0.112797!10786-110H3;0.0258182!10591-108D6;0.0278683!10593-108D8;0.420383!10590-108D5;0.213723!10026-101D8;0.651059!10096-102C6;0.525555!10168-103B6;0.689447!10154-103A1;0.498438!10209-103G2;0.487669!10061-101H7;0.602668!10027-101D9;0.0997541!10043-101F7;0.210002!10783-110G9;0.952683!10028-101E1;0.375763!10060-101H6;0.960786!10203-103F5;0.125806!10059-101H5;0.470109!10047-101G2;0.314901!10029-101E2;0.236649!10058-101H4;0.904116!10418-106C4;0.1197!10492-107B6;0.738543!10694-109G1;0.692047!10797-110I5;0.188178!10057-101H3;0.0553754!10100-102D1;0.0476651!10055-101H1;0.364814!10204-103F6;0.0350409!10191-103E2;0.850002!10563-108A5;0.935395
|name=TGAATTGGCTG,motif563,CNhs12011,T:288.0(9.62%),B:3236.8(4.54%),P:1e-31
|name=TGAATTGGCTG,motif563,CNhs12011,T:288.0(9.62%),B:3236.8(4.54%),P:1e-31
|tomtom_result=NFIC#MA0161.1;-4;0.00280041;1.333;1;6;TGAATTGGCTG;TTGGCA;+!HAP2#MA0313.1;-4;0.00336676;1.60258;1;5;TGAATTGGCTG;TTGGT;+!NFYA#MA0060.1;3;0.0113581;5.40645;1;11;TGAATTGGCTG;GCGCTGATTGGCTGAG;-!Nobox#MA0125.1;-1;0.0117938;5.61386;1;8;TGAATTGGCTG;TAATTGGT;+!Dr#MA0188.1;-1;0.0158872;7.56229;1;7;TGAATTGGCTG;TAATTGG;-!Hmx#MA0192.1;0;0.0185317;8.8211;1;7;TGAATTGGCTG;TTAATTG;+!CG34031#MA0444.1;0;0.0194851;9.27489;1;7;TGAATTGGCTG;TTAATTG;+!CG11085#MA0171.1;0;0.0204772;9.74714;1;7;TGAATTGGCTG;TTAATTG;+
}}
}}

Latest revision as of 14:25, 7 September 2012

Full Name: TGAATTGGCTG,motif563,CNhs12011,T:288.0(9.62%),B:3236.8(4.54%),P:1e-31

Motif matrix
POACGT
118.43233.1250.688185.76
20.28824.192263.2320.288
3153.50438.59231.96863.936
4259.4880.28812.67215.552
50.28841.760.288245.664
60.28815.26429.664242.784
75.1840.288220.89661.632
844.640.288207.64835.424
911.232232.70411.23232.832
1064.22467.680.288155.808
110.2880.288250.5636.864

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFIC#MA0161.1-40.002800411.33316TGAATTGGCTGTTGGCA+
HAP2#MA0313.1-40.003366761.6025815TGAATTGGCTGTTGGT+
NFYA#MA0060.130.01135815.40645111TGAATTGGCTGGCGCTGATTGGCTGAG-
Nobox#MA0125.1-10.01179385.6138618TGAATTGGCTGTAATTGGT+
Dr#MA0188.1-10.01588727.5622917TGAATTGGCTGTAATTGG-
Hmx#MA0192.100.01853178.821117TGAATTGGCTGTTAATTG+
CG34031#MA0444.100.01948519.2748917TGAATTGGCTGTTAATTG+
CG11085#MA0171.100.02047729.7471417TGAATTGGCTGTTAATTG+
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