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MacroAPE 1083:TTATTCTGCTG,motif789: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;102.268;175.514;135.436;968.782!2;1.382;114.706;59.426;1206.486!3;1046.174;60.808;125.762;149.256!4;96.74;64.954;81.538;1138.768!5;51.134;21...")
 
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108B1;0.42672!13230-141I8;0.59813!13231-141I9;0.187705!10696-109G3;0.407121!10493-107B7;0.80581!10494-107B8;0.570325!10850-111F4;0.052189!10851-111F5;0.331693!10852-111F6;0.81154!10853-111F7;0.612132!10854-111F8;0.737515!10855-111F9;0.863031!10856-111G1;0.543946!10847-111F1;0.458387!10846-111E9;0.265797!10848-111F2;0.687233!10845-111E8;0.349028!10857-111G2;0.507238!10858-111G3;0.747079!10156-103A3;0.614464!11901-125F2;0.0268852!11902-125F3;0.615959!11903-125F4;0.823425!10689-109F5;0.753732!10648-109A9;0.553211!10784-110H1;0.344749!10744-110C6;0.00105588!10772-110F7;0.789041!10474-106I6;0.229759!10600-108E6;0.980632!10684-109E9;0.833048!12226-129F3;0.0991459!12227-129F4;0.0341772!10508-107D4;0.409299!10539-107G8;0.646261!10607-108F4;0.312978!10555-107I6;0.702717!10774-110F9;0.976017!10637-108I7;0.784781!10663-109C6;0.570188!10728-110A8;0.337232!10729-110A9;0.745964!10430-106D7;0.540149!10730-110B1;0.248225!10813-111B3;0.997859!10812-111B2;0.708314!10037-101F1;0.0338848!10172-103C1;0.0134618!10163-103B1;0.0465335!10076-102A4;0.0375559!10073-102A1;0.014889!10036-101E9;0.241294!10195-103E6;0.00752367!10277-104E7;0.0134835!10434-106E2;0.0312335!10550-107I1;0.0229161!10545-107H5;0.00746323!10544-107H4;0.451697!10704-109H2;0.0559324!10510-107D6;0.252144!10558-107I9;0.0276639!10020-101D2;0.620891!10732-110B3;0.969926!10049-101G4;0.31395!10698-109G5;0.436692!10437-106E5;0.0817117!10417-106C3;0.0236716!10035-101E8;0.0439896!10171-103B9;0.00915344!10157-103A4;0.00890792!10034-101E7;0.0261495!10072-101I9;0.0093006!10199-103F1;0.276917!10200-103F2;0.505138!10697-109G4;0.371868!10723-110A3;0.617658!10179-103C8;0.00149375!10160-103A7;0.123528!10180-103C9;0.0869756!10162-103A9;0.730277!10021-101D3;0.659124!10840-111E3;0.298096!10706-109H4;0.0781659!10033-101E6;0.330378!10032-101E5;0.00576956!10490-107B4;0.0108326!10439-106E7;0.0229298!10022-101D4;0.00235846!10176-103C5;0.983546!10469-106I1;0.0646182!10067-101I4;0.0771138!10411-106B6;0.706855!10471-106I3;0.501917!10030-101E3;0.0696094!10475-106I7;0.0504265!10787-110H4;0.908232!10477-106I9;0.992965!10695-109G2;0.550989!11771-123I7;0.850617!11772-123I8;0.2035!11773-123I9;0.591749!10093-102C3;0.48397!10442-106F1;0.831347!10442-106F1;0.760429!10201-103F3;0.527618!10639-108I9;0.754999!11843-124H7;0.00902209!11841-124H5;0.350577!10693-109F9;0.71383!10436-106E4;0.00666149!10483-107A6;0.128394!10282-104F3;0.00856551!10023-101D5;0.803249!10066-101I3;0.720769!10065-101I2;0.351428!10800-110I8;0.26938!10610-108F7;0.143057!10841-111E4;0.252804!10541-107H1;0.686913!10842-111E5;0.478699!10562-108A4;0.947452!10024-101D6;0.25241!10064-101I1;0.900967!10609-108F6;0.744291!10048-101G3;0.325019!10781-110G7;0.267787!10181-103D1;0.536303!10159-103A6;0.0118504!10056-101H2;0.0159718!10737-110B8;0.00397638!10025-101D7;0.918175!10044-101F8;0.138506!10424-106D1;0.360033!10463-106H4;0.517736!10616-108G4;0.0271621!10486-107A9;0.00224043!10062-101H8;0.0321805!10202-103F4;0.899208!10158-103A5;0.890641!10441-106E9;0.00610901!10031-101E4;0.615369!10063-101H9;0.00827962!10063-101H9;0.209203!11763-123H8;0.394724!11765-123I1;0.116062!11768-123I4;0.0937887!10807-111A6;0.307692!10790-110H7;0.400558!10798-110I6;0.587431!10786-110H3;0.99818!10591-108D6;0.225872!10593-108D8;0.349082!10590-108D5;0.211662!10026-101D8;0.077221!10096-102C6;0.46617!10168-103B6;0.313124!10154-103A1;0.00245491!10209-103G2;0.0164419!10061-101H7;0.75958!10027-101D9;0.520865!10043-101F7;0.241848!10783-110G9;0.162676!10028-101E1;0.159181!10060-101H6;0.423693!10203-103F5;0.68135!10059-101H5;0.640804!10047-101G2;0.701897!10029-101E2;0.549549!10058-101H4;0.379373!10418-106C4;0.475824!10492-107B6;0.0328955!10694-109G1;0.00741148!10797-110I5;0.424394!10057-101H3;0.000156855!10100-102D1;0.39314!10055-101H1;0.535471!10204-103F6;0.491344!10191-103E2;0.46838!10563-108A5;0.774745
|name=TTATTCTGCTG,motif789,CNhs11762,T:1382.0(32.34%),B:17194.1(24.76%),P:1e-28
|name=TTATTCTGCTG,motif789,CNhs11762,T:1382.0(32.34%),B:17194.1(24.76%),P:1e-28
|tomtom_result=CUP2#MA0287.1;0;0.000733404;0.349101;0.698201;11;TTATTCTGCTG;CATTTCTGCTG;-!Sox2#MA0143.1;3;0.00727026;3.46064;1;11;TTATTCTGCTG;CCTTTGTTATGCAAA;+!ttk#MA0460.1;1;0.0130836;6.22779;1;8;TTATTCTGCTG;ATTATCCTT;-!MATA1#MA0327.1;-2;0.0150315;7.15499;1;7;TTATTCTGCTG;ATTGTGC;-
}}
}}

Latest revision as of 14:29, 7 September 2012

Full Name: TTATTCTGCTG,motif789,CNhs11762,T:1382.0(32.34%),B:17194.1(24.76%),P:1e-28

Motif matrix
POACGT
1102.268175.514135.436968.782
21.382114.70659.4261206.486
31046.17460.808125.762149.256
496.7464.95481.5381138.768
551.134212.82878.7741039.264
6143.7281156.7348.29273.246
7207.31.3821.3821171.936
882.9245.6061156.73496.74
91.3821138.76835.932205.918
10131.2923.4941.3821225.834
11167.22213.821198.1942.764

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CUP2#MA0287.100.0007334040.3491010.69820111TTATTCTGCTGCATTTCTGCTG-
Sox2#MA0143.130.007270263.46064111TTATTCTGCTGCCTTTGTTATGCAAA+
ttk#MA0460.110.01308366.2277918TTATTCTGCTGATTATCCTT-
MATA1#MA0327.1-20.01503157.1549917TTATTCTGCTGATTGTGC-
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