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MacroAPE 1083:13-GTGTCABACG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;62.928;78.66;398.088;144.324!2;0.684;251.712;0.684;430.92!3;64.296;139.536;443.916;36.252!4;114.228;0.684;0.684;568.404!5;82.764;363.204;225...")
 
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-107G3;0.625027!10429-106D6;0.906042!10464-106H5;0.520464!10827-111C8;0.671184!10789-110H6;0.324697!10828-111C9;0.877607!10788-110H5;0.287485!10792-110H9;0.672805!10765-110E9;0.890044!10829-111D1;0.452753!10830-111D2;0.418764!10831-111D3;0.222362!10832-111D4;0.62472!10833-111D5;0.236098!10764-110E8;0.314873!10770-110F5;0.137583!10399-106A3;0.137834!10400-106A4;0.816649!10405-106A9;0.851748!10834-111D6;0.699962!10835-111D7;0.461829!10836-111D8;0.389069!10837-111D9;0.427768!10699-109G6;0.669848!10802-111A1;0.673299!10796-110I4;0.434895!10010-101C1;0.409264!10810-111A9;0.640842!10421-106C7;0.540458!10708-109H6;0.348539!12235-129G3;0.527535!12236-129G4;0.382254!12237-129G5;0.901681!10167-103B5;0.401895!10151-102I7;0.312413!10428-106D5;0.231728!10795-110I3;0.97419!10805-111A4;0.175788!10052-101G7;0.118619!10189-103D9;0.421332!10589-108D4;0.32825!10425-106D2;0.569964!10427-106D4;0.527634!10702-109G9;0.179671!10432-106D9;0.524612!10496-107C1;0.146587!10718-109I7;0.26843!10011-101C2;0.21931!10053-101G8;0.733627!10686-109F2;0.200817!10084-102B3;0.935414!10012-101C3;0.2228!10085-102B4;0.269106!10482-107A5;0.153911!10419-106C5;0.460546!10080-102A8;0.545099!10760-110E4;0.481854!10709-109H7;0.408113!10710-109H8;0.431754!10703-109H1;0.868243!10719-109I8;0.41878!10642-109A3;0.00466996!10177-103C6;0.516047!10164-103B2;0.296262!10173-103C2;0.192908!10166-103B4;0.59051!10083-102B2;0.380346!10188-103D8;0.403825!10552-107I3;0.277325!10553-107I4;0.309181!10013-101C4;0.247435!10536-107G5;0.540833!10618-108G6;0.0820149!10423-106C9;0.441663!10785-110H2;0.565785!12238-129G6;0.526217!12239-129G7;0.642115!12240-129G8;0.133381!10416-106C2;0.796678!10801-110I9;0.774499!10766-110F1;0.491779!10824-111C5;0.647667!10825-111C6;0.39185!10826-111C7;0.41597!10454-106G4;0.385843!10409-106B4;0.527865!10638-108I8;0.768653!10636-108I6;0.414199!10513-107D9;0.151544!10420-106C6;0.803611!10082-102B1;0.67295!10014-101C5;0.243767!10070-101I7;0.410933!10452-106G2;0.267567!10453-106G3;0.181401!10449-106F8;0.367723!10042-101F6;0.448194!10069-101I6;0.270605!10193-103E4;0.251647!10631-108I1;0.299791!10438-106E6;0.59229!10488-107B2;0.246619!10196-103E7;0.253401!10071-101I8;0.600668!10071-101I8;0.349576!10041-101F5;0.320818!10451-106G1;0.300346!10450-106F9;0.593524!10604-108F1;0.793648!10605-108F2;0.171802!10606-108F3;0.45374!10603-108E9;0.260975!10497-107C2;0.156735!10448-106F7;0.888807!10643-109A4;0.672622!10426-106D3;0.3128!10431-106D8;0.234072!10197-103E8;0.735603!10443-106F2;0.132618!10815-111B5;0.282236!10816-111B6;0.460501!10817-111B7;0.245782!10015-101C6;0.46494!10410-106B5;0.478672!10054-101G9;0.865376!10758-110E2;0.312352!10711-109H9;0.239456!10040-101F4;0.257991!10470-106I2;0.305326!10415-106C1;0.790203!10198-103E9;0.742008!10614-108G2;0.333935!10612-108F9;0.337682!10549-107H9;0.64627!10615-108G3;0.596581!10487-107B1;0.44897!10433-106E1;0.336053!10688-109F4;0.900799!10444-106F3;0.441129!10444-106F3;0.727433!10485-107A8;0.864777!10413-106B8;0.273401!10175-103C4;0.158225!10161-103A8;0.360983!12131-128D7;0.323534!10624-108H3;0.161532!10712-109I1;0.186422!10205-103F7;0.527026!10206-103F8;0.461611!10207-103F9;0.475558!10050-101G5;0.514339!10051-101G6;0.636954!10016-101C7;0.370445!10046-101G1;0.756733!10778-110G4;0.414226!10633-108I3;0.44403!10818-111B8;0.135907!10819-111B9;0.512154!10820-111C1;0.507112!10484-107A7;0.517382!10808-111A7;0.551982!10169-103B7;0.574498!10153-102I9;0.33148!13425-144D5;0.242917!13433-144E4;0.0942907!13437-144E8;0.0545562!11904-125F5;0.0351221!11905-125F6;0.40718!10039-101F3;0.27246!10791-110H8;0.221227!10017-101C8;0.528519!10045-101F9;0.227542!10509-107D5;0.126945!10839-111E2;0.253441!10692-109F8;0.499125!10079-102A7;0.585715!10078-102A6;0.606065!10721-110A1;0.785777!10569-108B2;0.0912547!10570-108B3;0.17335!10571-108B4;0.345489!10647-109A8;0.281855!10752-110D5;0.25095!10782-110G8;0.310023!10726-110A6;0.271769!10018-101C9;0.428551!10086-102B5;0.295848!10182-103D2;0.871891!10165-103B3;0.418923!10499-107C4;0.31512!10408-106B3;0.518345!10019-101D1;0.977647!10068-101I5;0.882555!10075-102A3;0.430046!10077-102A5;0.819166!10727-110A7;0.512473!10775-110G1;0.149368!10412-106B7;0.264971!12231-129F8;0.403522!12232-129F9;0.00871091!12233-129G1;0.0446306!12234-129G2;0.048401!10414-106B9;0.0181527!10170-103B8;0.613318!10183-103D3;0.278133!10150-102I6;0.310711!10174-103C3;0.270849!10155-103A2;0.243394!10038-101F2;0.228357!10838-111E1;0.247263!10759-110E3;0.54968!10514-107E1;0.614193!10465-106H6;0.0334043!10691-109F7;0.30197!10843-111E6;0.554326!10844-111E7;0.544157!11747-123G1;0.64235!11748-123G2;0.523624!11749-123G3;0.775125!11750-123G4;0.540455!11751-123G5;0.891393!11840-124H4;0.695353!11752-123G6;0.493694!11753-123G7;0.162439!11754-123G8;0.966883!11755-123G9;0.604366!11756-123H1;0.307866!11833-124G6;0.516776!11760-123H5;0.979652!11836-124G9;0.17736!11758-123H3;0.466176!11835-124G8;0.20147!11762-123H7;0.273177!11838-124H2;0.861743!11757-123H2;0.700288!11759-123H4;0.555888!11761-123H6;0.230908!11842-124H6;0.876093!11837-124H1;0.45289!10568-108B1;0.31267!13230-141I8;0.0693816!13231-141I9;0.579909!10696-109G3;0.594239!10493-107B7;0.658788!10494-107B8;0.594048!10850-111F4;0.910026!10851-111F5;0.666153!10852-111F6;0.675048!10853-111F7;0.689519!10854-111F8;0.71705!10855-111F9;0.794029!10856-111G1;0.157985!10847-111F1;0.438326!10846-111E9;0.515187!10848-111F2;0.416681!10845-111E8;0.575676!10857-111G2;0.394717!10858-111G3;0.190759!10156-103A3;0.191826!11901-125F2;0.24586!11902-125F3;0.927317!11903-125F4;0.91159!10689-109F5;0.99008!10648-109A9;0.965963!10784-110H1;0.762756!10744-110C6;0.336098!10772-110F7;0.135281!10474-106I6;0.831998!10600-108E6;0.153403!10684-109E9;0.779421!12226-129F3;0.518864!12227-129F4;0.265777!10508-107D4;0.626784!10539-107G8;0.867639!10607-108F4;0.897249!10555-107I6;0.188147!10774-110F9;0.717228!10637-108I7;0.33986!10663-109C6;0.162832!10728-110A8;0.200973!10729-110A9;0.0141223!10430-106D7;0.308386!10730-110B1;0.622801!10813-111B3;0.818005!10812-111B2;0.425356!10037-101F1;0.403298!10172-103C1;0.250045!10163-103B1;0.355436!10076-102A4;0.292456!10073-102A1;0.34094!10036-101E9;0.384308!10195-103E6;0.27451!10277-104E7;0.297524!10434-106E2;0.942386!10550-107I1;0.0638573!10545-107H5;0.346974!10544-107H4;0.460553!10704-109H2;0.318417!10510-107D6;0.828611!10558-107I9;0.236016!10020-101D2;0.014065!10732-110B3;0.261404!10049-101G4;0.867105!10698-109G5;0.283325!10437-106E5;0.236505!10417-106C3;0.868469!10035-101E8;0.442457!10171-103B9;0.274246!10157-103A4;0.328374!10034-101E7;0.269862!10072-101I9;0.27289!10199-103F1;0.352046!10200-103F2;0.855251!10697-109G4;0.421198!10723-110A3;0.0179777!10179-103C8;0.169371!10160-103A7;0.253746!10180-103C9;0.120158!10162-103A9;0.505675!10021-101D3;0.38881!10840-111E3;0.910322!10706-109H4;0.244159!10033-101E6;0.0512291!10032-101E5;0.342263!10490-107B4;0.255482!10439-106E7;0.86384!10022-101D4;0.787604!10176-103C5;0.630178!10469-106I1;0.261217!10067-101I4;0.416004!10411-106B6;0.387005!10471-106I3;0.639091!10030-101E3;0.0319983!10475-106I7;0.216641!10787-110H4;0.843984!10477-106I9;0.783932!10695-109G2;0.684249!11771-123I7;0.866774!11772-123I8;0.37315!11773-123I9;0.295745!10093-102C3;0.147112!10442-106F1;0.516449!10442-106F1;0.0679574!10201-103F3;0.0454156!10639-108I9;0.41198!11843-124H7;0.580751!11841-124H5;0.0656079!10693-109F9;0.822602!10436-106E4;0.309311!10483-107A6;0.56983!10282-104F3;0.595699!10023-101D5;0.794098!10066-101I3;0.655888!10065-101I2;0.124804!10800-110I8;0.363813!10610-108F7;0.790844!10841-111E4;0.502086!10541-107H1;0.274124!10842-111E5;0.319675!10562-108A4;0.963744!10024-101D6;0.350266!10064-101I1;0.34388!10609-108F6;0.354398!10048-101G3;0.823133!10781-110G7;0.572188!10181-103D1;0.263919!10159-103A6;0.469613!10056-101H2;0.312716!10737-110B8;0.284849!10025-101D7;0.600526!10044-101F8;0.482595!10424-106D1;0.522623!10463-106H4;0.217075!10616-108G4;0.201991!10486-107A9;0.706832!10062-101H8;0.165465!10202-103F4;0.801393!10158-103A5;0.464179!10441-106E9;0.427376!10031-101E4;0.270493!10063-101H9;0.249594!10063-101H9;0.407297!11763-123H8;0.225187!11765-123I1;0.415267!11768-123I4;0.43494!10807-111A6;0.496329!10790-110H7;0.731492!10798-110I6;0.937878!10786-110H3;0.94673!10591-108D6;0.527497!10593-108D8;0.485783!10590-108D5;0.978566!10026-101D8;0.829024!10096-102C6;0.881399!10168-103B6;0.431229!10154-103A1;0.500207!10209-103G2;0.327739!10061-101H7;0.351263!10027-101D9;0.314006!10043-101F7;0.746292!10783-110G9;0.917824!10028-101E1;0.842695!10060-101H6;0.558749!10203-103F5;0.4855!10059-101H5;0.393984!10047-101G2;0.426717!10029-101E2;0.358902!10058-101H4;0.444945!10418-106C4;0.324388!10492-107B6;0.71051!10694-109G1;0.660091!10797-110I5;0.685901!10057-101H3;0.275421!10100-102D1;0.26369!10055-101H1;0.194721!10204-103F6;0.390895!10191-103E2;0.661944!10563-108A5;0.385332
|name=13-GTGTCABACG,CNhs11956,BestGuess:ARNT2_si_HM09(0.598471375174173),T:684.0(15.18%),B:3792.5(8.84%),P:1e-42
|name=13-GTGTCABACG,CNhs11956,BestGuess:ARNT2_si_HM09(0.598471375174173),T:684.0(15.18%),B:3792.5(8.84%),P:1e-42
|tomtom_result=Six4#MA0204.1;-3;0.00150321;0.715527;1;6;GTGTCATACG;TGATAC;+!STP2#MA0395.1;0;0.00355517;1.69226;1;10;GTGTCATACG;TCGTCGTGCGGCGCCGATCA;-!ABF1#MA0265.1;5;0.00371918;1.77033;1;10;GTGTCATACG;ATATCACTTTATACGA;-!so#MA0246.1;-3;0.013822;6.5793;1;6;GTGTCATACG;TGATAC;+!vis#MA0252.1;0;0.0147874;7.03879;1;6;GTGTCATACG;CTGTCA;-!TOS8#MA0408.1;0;0.0178875;8.51447;1;8;GTGTCATACG;CTGTCAAA;+!exd#MA0222.1;-1;0.0188372;8.96651;1;8;GTGTCATACG;TGTCAAAA;-!ARG80#MA0271.1;0;0.0191019;9.09251;1;6;GTGTCATACG;GCGTCT;-
}}
}}

Latest revision as of 14:31, 7 September 2012

Full Name: 13-GTGTCABACG,CNhs11956,BestGuess:ARNT2_si_HM09(0.598471375174173),T:684.0(15.18%),B:3792.5(8.84%),P:1e-42

Motif matrix
POACGT
162.92878.66398.088144.324
20.684251.7120.684430.92
364.296139.536443.91636.252
4114.2280.6840.684568.404
582.764363.204225.7212.312
6533.520.6840.684149.112
751.984197.676210.672223.668
8537.6240.684130.64415.048
90.684681.9480.6840.684
1010.94433.516527.364112.176

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Six4#MA0204.1-30.001503210.71552716GTGTCATACGTGATAC+
STP2#MA0395.100.003555171.69226110GTGTCATACGTCGTCGTGCGGCGCCGATCA-
ABF1#MA0265.150.003719181.77033110GTGTCATACGATATCACTTTATACGA-
so#MA0246.1-30.0138226.579316GTGTCATACGTGATAC+
vis#MA0252.100.01478747.0387916GTGTCATACGCTGTCA-
TOS8#MA0408.100.01788758.5144718GTGTCATACGCTGTCAAA+
exd#MA0222.1-10.01883728.9665118GTGTCATACGTGTCAAAA-
ARG80#MA0271.100.01910199.0925116GTGTCATACGGCGTCT-
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