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MacroAPE 1083:Motif TNTGCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;195312!02;48828;48828;48828;48828!03;0;0;0;195312!04;0;0;195312;0!05;0;195312;0;0!06;195312;0;0;0 |macroape_1083_sample_pvalues=1137...")
 
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0828-111C9;0.877242!10788-110H5;0.837235!10792-110H9;0.627111!10765-110E9;0.205351!10829-111D1;0.761625!10830-111D2;0.544775!10831-111D3;0.455204!10832-111D4;0.733469!10833-111D5;0.930645!10764-110E8;0.601992!10770-110F5;0.787042!10399-106A3;0.943536!10400-106A4;0.473521!10405-106A9;0.496643!10834-111D6;0.495068!10835-111D7;0.693243!10836-111D8;0.0572552!10837-111D9;0.183308!10699-109G6;0.0837866!10802-111A1;0.15911!10796-110I4;0.144316!10010-101C1;0.0623135!10810-111A9;0.712138!10421-106C7;0.341145!10708-109H6;0.411791!12235-129G3;0.17578!12236-129G4;0.166118!12237-129G5;0.940912!10167-103B5;0.267561!10151-102I7;0.0276135!10428-106D5;0.0328796!10795-110I3;0.803066!10805-111A4;0.456384!10052-101G7;0.341479!10189-103D9;0.259792!10589-108D4;0.150641!10425-106D2;0.0200687!10427-106D4;0.583637!10702-109G9;0.764501!10432-106D9;0.714055!10496-107C1;0.151355!10718-109I7;0.22177!10011-101C2;0.761081!10053-101G8;0.229468!10686-109F2;0.980109!10084-102B3;0.263159!10012-101C3;0.0144493!10085-102B4;0.0205999!10482-107A5;0.0440222!10419-106C5;0.533456!10080-102A8;0.0886994!10760-110E4;0.414758!10709-109H7;0.292487!10710-109H8;0.148363!10703-109H1;0.91738!10719-109I8;0.929078!10642-109A3;0.0885886!10177-103C6;0.39274!10164-103B2;0.0218675!10173-103C2;0.0224486!10166-103B4;0.206716!10083-102B2;0.222973!10188-103D8;0.117194!10552-107I3;0.0165396!10553-107I4;0.2535!10013-101C4;0.260354!10536-107G5;0.271023!10618-108G6;0.367563!10423-106C9;0.389798!10785-110H2;0.324203!12238-129G6;0.348847!12239-129G7;0.645348!12240-129G8;0.738785!10416-106C2;0.801977!10801-110I9;0.456641!10766-110F1;0.267013!10824-111C5;0.0623454!10825-111C6;0.0111967!10826-111C7;0.00707318!10454-106G4;0.005609!10409-106B4;0.00542017!10638-108I8;0.0743499!10636-108I6;0.235474!10513-107D9;0.26468!10420-106C6;0.186429!10082-102B1;0.106724!10014-101C5;0.184494!10070-101I7;0.678769!10452-106G2;0.295175!10453-106G3;0.523742!10449-106F8;0.825155!10042-101F6;0.801823!10069-101I6;0.200987!10193-103E4;0.940245!10631-108I1;0.0254224!10438-106E6;0.672987!10488-107B2;0.462162!10196-103E7;0.0599664!10071-101I8;0.37377!10071-101I8;0.383571!10041-101F5;0.0435355!10451-106G1;0.157092!10450-106F9;0.00750465!10604-108F1;0.154584!10605-108F2;0.41795!10606-108F3;0.262771!10603-108E9;0.286075!10497-107C2;0.22132!10448-106F7;0.0856877!10643-109A4;0.243242!10426-106D3;0.605015!10431-106D8;0.28397!10197-103E8;0.522119!10443-106F2;0.487887!10815-111B5;0.475477!10816-111B6;0.139203!10817-111B7;0.138689!10015-101C6;0.133158!10410-106B5;0.438467!10054-101G9;0.147587!10758-110E2;0.348744!10711-109H9;0.495991!10040-101F4;0.650935!10470-106I2;0.0282398!10415-106C1;0.46914!10198-103E9;0.174929!10614-108G2;0.234572!10612-108F9;0.0763991!10549-107H9;0.188134!10615-108G3;0.448729!10487-107B1;0.277942!10433-106E1;0.18467!10688-109F4;0.232602!10444-106F3;0.31445!10444-106F3;0.871816!10485-107A8;0.844492!10413-106B8;0.145595!10175-103C4;0.0486092!10161-103A8;0.0468001!12131-128D7;0.170868!10624-108H3;0.647775!10712-109I1;0.68932!10205-103F7;0.837442!10206-103F8;0.842061!10207-103F9;0.725352!10050-101G5;0.827063!10051-101G6;0.584441!10016-101C7;0.746773!10046-101G1;0.786802!10778-110G4;0.79821!10633-108I3;0.701033!10818-111B8;0.112953!10819-111B9;0.138025!10820-111C1;0.143092!10484-107A7;0.154838!10808-111A7;0.0120832!10169-103B7;0.752501!10153-102I9;0.0312894!13425-144D5;0.0561861!13433-144E4;0.542256!13437-144E8;0.518325!11904-125F5;0.492699!11905-125F6;0.335341!10039-101F3;0.398758!10791-110H8;0.023953!10017-101C8;0.223026!10045-101F9;0.887433!10509-107D5;0.630378!10839-111E2;0.328124!10692-109F8;0.787447!10079-102A7;0.172554!10078-102A6;0.517409!10721-110A1;0.768145!10569-108B2;0.111583!10570-108B3;0.524989!10571-108B4;0.863385!10647-109A8;0.665007!10752-110D5;0.0318488!10782-110G8;0.0124588!10726-110A6;0.188914!10018-101C9;0.314592!10086-102B5;0.0280686!10182-103D2;0.08449!10165-103B3;0.0558303!10499-107C4;0.109973!10408-106B3;0.0835384!10019-101D1;0.397041!10068-101I5;0.639631!10075-102A3;0.832709!10077-102A5;0.626801!10727-110A7;0.173462!10775-110G1;0.503605!10412-106B7;0.496413!12231-129F8;0.299809!12232-129F9;0.455729!12233-129G1;0.542407!12234-129G2;0.370652!10414-106B9;0.175051!10170-103B8;0.049731!10183-103D3;0.0151339!10150-102I6;0.0153391!10174-103C3;0.0297897!10155-103A2;0.122161!10038-101F2;0.179028!10838-111E1;0.0970234!10759-110E3;0.918939!10514-107E1;0.477618!10465-106H6;0.00644835!10691-109F7;0.114665!10843-111E6;0.112783!10844-111E7;0.956539!11747-123G1;0.392798!11748-123G2;0.652578!11749-123G3;0.734464!11750-123G4;0.697691!11751-123G5;0.611675!11840-124H4;0.675011!11752-123G6;0.646237!11753-123G7;0.589444!11754-123G8;0.652676!11755-123G9;0.941918!11756-123H1;0.976901!11833-124G6;0.874147!11760-123H5;0.886794!11836-124G9;0.610681!11758-123H3;0.961524!11835-124G8;0.903392!11762-123H7;0.622764!11838-124H2;0.932464!11757-123H2;0.758971!11759-123H4;0.816169!11761-123H6;0.752259!11842-124H6;0.850905!11837-124H1;0.317821!10568-108B1;0.338278!13230-141I8;0.296877!13231-141I9;0.300755!10696-109G3;0.388063!10493-107B7;0.567534!10494-107B8;0.323505!10850-111F4;0.435384!10851-111F5;0.321001!10852-111F6;0.130977!10853-111F7;0.0393413!10854-111F8;0.308396!10855-111F9;0.266825!10856-111G1;0.052455!10847-111F1;0.324889!10846-111E9;0.929314!10848-111F2;0.395199!10845-111E8;0.635966!10857-111G2;0.117794!10858-111G3;0.291843!10156-103A3;0.203823!11901-125F2;0.0366813!11902-125F3;0.730481!11903-125F4;0.467053!10689-109F5;0.666607!10648-109A9;0.0227718!10784-110H1;0.660115!10744-110C6;0.231999!10772-110F7;0.577004!10474-106I6;0.637746!10600-108E6;0.439692!10684-109E9;0.360806!12226-129F3;0.729189!12227-129F4;0.220382!10508-107D4;0.0447239!10539-107G8;0.610397!10607-108F4;0.298838!10555-107I6;0.818355!10774-110F9;0.73984!10637-108I7;0.467466!10663-109C6;0.262567!10728-110A8;0.961671!10729-110A9;0.893109!10430-106D7;0.577334!10730-110B1;0.469695!10813-111B3;0.869758!10812-111B2;0.84207!10037-101F1;0.301727!10172-103C1;0.0274355!10163-103B1;0.0175545!10076-102A4;0.0548545!10073-102A1;0.0157748!10036-101E9;0.0351506!10195-103E6;0.0160728!10277-104E7;0.0286345!10434-106E2;0.58944!10550-107I1;0.0897428!10545-107H5;0.314672!10544-107H4;0.479303!10704-109H2;0.376813!10510-107D6;0.866749!10558-107I9;0.794915!10020-101D2;0.0499517!10732-110B3;0.406682!10049-101G4;0.550362!10698-109G5;0.270085!10437-106E5;0.168095!10417-106C3;0.375347!10035-101E8;0.0255439!10171-103B9;0.0257003!10157-103A4;0.0306828!10034-101E7;0.0298904!10072-101I9;0.0294419!10199-103F1;0.044875!10200-103F2;0.820417!10697-109G4;0.538482!10723-110A3;0.869497!10179-103C8;0.434542!10160-103A7;0.120914!10180-103C9;0.218325!10162-103A9;0.496341!10021-101D3;0.665297!10840-111E3;0.587651!10706-109H4;0.870402!10033-101E6;0.129463!10032-101E5;0.0603277!10490-107B4;0.0200974!10439-106E7;0.367568!10022-101D4;0.116656!10176-103C5;0.320589!10469-106I1;0.0157501!10067-101I4;0.0890322!10411-106B6;0.182453!10471-106I3;0.0551103!10030-101E3;0.0477086!10475-106I7;0.28049!10787-110H4;0.578844!10477-106I9;0.0496395!10695-109G2;0.340329!11771-123I7;0.759082!11772-123I8;0.230104!11773-123I9;0.390441!10093-102C3;0.147766!10442-106F1;0.770781!10442-106F1;0.437198!10201-103F3;0.623704!10639-108I9;0.325201!11843-124H7;0.210683!11841-124H5;0.33087!10693-109F9;0.302125!10436-106E4;0.113143!10483-107A6;0.198482!10282-104F3;0.0727379!10023-101D5;0.339628!10066-101I3;0.815438!10065-101I2;0.750136!10800-110I8;0.393478!10610-108F7;0.403014!10841-111E4;0.0517355!10541-107H1;0.320833!10842-111E5;0.620837!10562-108A4;0.379267!10024-101D6;0.168819!10064-101I1;0.870007!10609-108F6;0.367409!10048-101G3;0.111177!10781-110G7;0.433121!10181-103D1;0.622724!10159-103A6;0.0662053!10056-101H2;0.221104!10737-110B8;0.0957568!10025-101D7;0.896101!10044-101F8;0.358549!10424-106D1;0.571059!10463-106H4;0.896295!10616-108G4;0.280895!10486-107A9;0.1008!10062-101H8;0.0724539!10202-103F4;0.875548!10158-103A5;0.730633!10441-106E9;0.386266!10031-101E4;0.641121!10063-101H9;0.0185553!10063-101H9;0.0318128!11763-123H8;0.2154!11765-123I1;0.918409!11768-123I4;0.944824!10807-111A6;0.748986!10790-110H7;0.999207!10798-110I6;0.83931!10786-110H3;0.121861!10591-108D6;0.766503!10593-108D8;0.498681!10590-108D5;0.604175!10026-101D8;0.833423!10096-102C6;0.639277!10168-103B6;0.152415!10154-103A1;0.090352!10209-103G2;0.128517!10061-101H7;0.713499!10027-101D9;0.731826!10043-101F7;0.690021!10783-110G9;0.695038!10028-101E1;0.540755!10060-101H6;0.274336!10203-103F5;0.68595!10059-101H5;0.794784!10047-101G2;0.950973!10029-101E2;0.382069!10058-101H4;0.448904!10418-106C4;0.632461!10492-107B6;0.607922!10694-109G1;0.195055!10797-110I5;0.525294!10057-101H3;0.013972!10100-102D1;0.507636!10055-101H1;0.576652!10204-103F6;0.469675!10191-103E2;0.668839!10563-108A5;0.24571
|name=motif_TNTGCA
|name=motif_TNTGCA
|tomtom_result=slbo#MA0244.1;0;0.0013697;0.651979;0.590229;6;TATGCA;TTTGCAAT;-!Pou5f1#MA0142.1;1;0.00147852;0.703775;0.590229;6;TATGCA;ATTTGCATAACAAAG;-!Sox2#MA0143.1;0;0.00239193;1.13856;0.590229;6;TATGCA;TTTGCATAACAAAGG;-!vvl#MA0254.1;0;0.00247995;1.18046;0.590229;6;TATGCA;TATGCA;+!PHD1#MA0355.1;1;0.00525428;2.50104;0.76134;6;TATGCA;TGCTGCAGGT;-!nub#MA0453.1;4;0.00530579;2.52556;0.76134;6;TATGCA;CTAATTTGCATA;-!CEBPA#MA0102.2;1;0.0066702;3.17501;0.76134;6;TATGCA;TTTCGCAAT;+!Cebpa#MA0102.1;1;0.0116436;5.54237;1;6;TATGCA;TTTCGCAATCTT;+!Ddit3::Cebpa#MA0019.1;1;0.0136398;6.49256;1;6;TATGCA;AGATGCAATCCC;+!SOK2#MA0385.1;1;0.0137054;6.52377;1;6;TATGCA;ACCTGCAGGCA;+
}}
}}

Latest revision as of 14:31, 7 September 2012

Full Name: motif_TNTGCA

Motif matrix
POACGT
01000195312
0248828488284882848828
03000195312
04001953120
05019531200
06195312000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
slbo#MA0244.100.00136970.6519790.5902296TATGCATTTGCAAT-
Pou5f1#MA0142.110.001478520.7037750.5902296TATGCAATTTGCATAACAAAG-
Sox2#MA0143.100.002391931.138560.5902296TATGCATTTGCATAACAAAGG-
vvl#MA0254.100.002479951.180460.5902296TATGCATATGCA+
PHD1#MA0355.110.005254282.501040.761346TATGCATGCTGCAGGT-
nub#MA0453.140.005305792.525560.761346TATGCACTAATTTGCATA-
CEBPA#MA0102.210.00667023.175010.761346TATGCATTTCGCAAT+
Cebpa#MA0102.110.01164365.5423716TATGCATTTCGCAATCTT+
Ddit3::Cebpa#MA0019.110.01363986.4925616TATGCAAGATGCAATCCC+
SOK2#MA0385.110.01370546.5237716TATGCAACCTGCAGGCA+
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