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MacroAPE 1083:CNhs11774 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1147.8314856981501;571.5422292227854;465.19189975362787;402.4871908587194!2;381.6559704291261;1135.8254248233056;600.968193747841;468.603216...")
 
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98184!10850-111F4;0.61685!10851-111F5;0.673026!10852-111F6;0.882015!10853-111F7;0.644391!10854-111F8;0.601754!10855-111F9;0.539173!10856-111G1;0.99016!10847-111F1;0.519329!10846-111E9;0.323508!10848-111F2;0.981622!10845-111E8;0.838793!10857-111G2;0.0523654!10858-111G3;0.885264!10156-103A3;0.477144!11901-125F2;0.921218!11902-125F3;0.607724!11903-125F4;0.915487!10689-109F5;0.890455!10648-109A9;0.197235!10784-110H1;0.608429!10744-110C6;0.863095!10772-110F7;0.224598!10474-106I6;0.233717!10600-108E6;0.660429!10684-109E9;0.12201!12226-129F3;0.632711!12227-129F4;0.964733!10508-107D4;0.620925!10539-107G8;0.682727!10607-108F4;0.925999!10555-107I6;0.952419!10774-110F9;0.696601!10637-108I7;0.409969!10663-109C6;0.962265!10728-110A8;0.705808!10729-110A9;0.591462!10430-106D7;0.679393!10730-110B1;0.545617!10813-111B3;0.208621!10812-111B2;0.222524!10037-101F1;0.971204!10172-103C1;0.960444!10163-103B1;0.712039!10076-102A4;0.958648!10073-102A1;0.883893!10036-101E9;0.741685!10195-103E6;0.970408!10277-104E7;0.875394!10434-106E2;0.532782!10550-107I1;0.388858!10545-107H5;0.391737!10544-107H4;0.809436!10704-109H2;0.863425!10510-107D6;0.489748!10558-107I9;0.806948!10020-101D2;0.817631!10732-110B3;0.380947!10049-101G4;0.154659!10698-109G5;0.462066!10437-106E5;0.474164!10417-106C3;0.542844!10035-101E8;0.769871!10171-103B9;0.977081!10157-103A4;0.715501!10034-101E7;0.942647!10072-101I9;0.957637!10199-103F1;0.99617!10200-103F2;0.438791!10697-109G4;0.583273!10723-110A3;0.797419!10179-103C8;0.876815!10160-103A7;0.749328!10180-103C9;0.998788!10162-103A9;0.706067!10021-101D3;0.733737!10840-111E3;0.717125!10706-109H4;0.924012!10033-101E6;0.197749!10032-101E5;0.790399!10490-107B4;0.989249!10439-106E7;0.612988!10022-101D4;0.922691!10176-103C5;0.672642!10469-106I1;0.9642!10067-101I4;0.605318!10411-106B6;0.398017!10471-106I3;0.242966!10030-101E3;0.205936!10475-106I7;0.698568!10787-110H4;0.706917!10477-106I9;0.881227!10695-109G2;0.54766!11771-123I7;0.590058!11772-123I8;0.969703!11773-123I9;0.696454!10093-102C3;0.399634!10442-106F1;0.887449!10442-106F1;0.612313!10201-103F3;0.783087!10639-108I9;0.840311!11843-124H7;0.998826!11841-124H5;0.497345!10693-109F9;0.623655!10436-106E4;0.53601!10483-107A6;0.377206!10282-104F3;0.265938!10023-101D5;0.614029!10066-101I3;0.90296!10065-101I2;0.774053!10800-110I8;0.587628!10610-108F7;0.18138!10841-111E4;0.238783!10541-107H1;0.626795!10842-111E5;0.275381!10562-108A4;0.318979!10024-101D6;0.0930198!10064-101I1;0.488701!10609-108F6;0.309176!10048-101G3;0.690133!10781-110G7;0.926863!10181-103D1;0.3816!10159-103A6;0.687218!10056-101H2;0.576429!10737-110B8;0.569933!10025-101D7;0.829726!10044-101F8;0.901879!10424-106D1;0.719453!10463-106H4;0.613214!10616-108G4;0.615039!10486-107A9;0.0710422!10062-101H8;0.952808!10202-103F4;0.807786!10158-103A5;0.834864!10441-106E9;0.448724!10031-101E4;0.904569!10063-101H9;0.917913!10063-101H9;0.833987!11763-123H8;0.73022!11765-123I1;0.616778!11768-123I4;0.237957!10807-111A6;0.910118!10790-110H7;0.818926!10798-110I6;0.879324!10786-110H3;0.891455!10591-108D6;0.399764!10593-108D8;0.978413!10590-108D5;0.724319!10026-101D8;0.550074!10096-102C6;0.328791!10168-103B6;0.521714!10154-103A1;0.879448!10209-103G2;0.733547!10061-101H7;0.566549!10027-101D9;0.727214!10043-101F7;0.526604!10783-110G9;0.875016!10028-101E1;0.428918!10060-101H6;0.759763!10203-103F5;0.959537!10059-101H5;0.698473!10047-101G2;0.707868!10029-101E2;0.595668!10058-101H4;0.592317!10418-106C4;0.731037!10492-107B6;0.410327!10694-109G1;0.109356!10797-110I5;0.0777206!10057-101H3;0.868951!10100-102D1;0.557227!10055-101H1;0.918143!10204-103F6;0.335477!10191-103E2;0.404977!10563-108A5;0.908195
|name=CNhs11774_bu_f2
|name=CNhs11774_bu_f2
|tomtom_result=GCN4#MA0303.1;9;0.00228527;1.08779;0.964854;9;ACTCACCGC;TGAAGTATGACTCATCCCTTG;-!MET31#MA0333.1;0;0.0039887;1.89862;0.964854;9;ACTCACCGC;CGCCACACT;-!Pax4#MA0068.1;19;0.00526951;2.50829;0.964854;9;ACTCACCGC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!RUNX1#MA0002.2;1;0.00654875;3.11721;0.964854;9;ACTCACCGC;AAACCACAGAC;-!Fos#MA0099.1;2;0.00686186;3.26624;0.964854;6;ACTCACCGC;TGACTCAC;-!ABF1#MA0265.1;1;0.00793891;3.77892;0.964854;9;ACTCACCGC;ATATCACTTTATACGA;-!Nkx3-2#MA0122.1;-1;0.0107749;5.12887;0.964854;8;ACTCACCGC;TCCACTTAA;-!YPR022C#MA0436.1;0;0.0109952;5.23373;0.964854;7;ACTCACCGC;CCCCACG;+!z#MA0255.1;0;0.0116949;5.56679;0.964854;9;ACTCACCGC;AATCACTCAA;-!ZNF354C#MA0130.1;0;0.0117091;5.57351;0.964854;6;ACTCACCGC;ATCCAC;+!Gamyb#MA0034.1;0;0.0124752;5.9382;0.964854;9;ACTCACCGC;GACAACCGCC;+!YGR067C#MA0425.1;1;0.0131755;6.27155;0.964854;9;ACTCACCGC;ACCCCACTTTTTTG;+!Pax2#MA0067.1;0;0.0152823;7.27435;1;8;ACTCACCGC;AGTCACGG;+!Pax5#MA0014.1;1;0.0158771;7.55751;1;9;ACTCACCGC;GGAGCACTGAAGCGTAACCG;+!RREB1#MA0073.1;9;0.0180893;8.61049;1;9;ACTCACCGC;CCCCAAACCACCCCCCCCCC;+!AFT2#MA0270.1;-1;0.0183572;8.73805;1;8;ACTCACCGC;CACACCCC;+!Gfi#MA0038.1;2;0.0204433;9.73102;1;8;ACTCACCGC;CAAATCACTG;+
}}
}}

Latest revision as of 14:37, 7 September 2012

Full Name: CNhs11774_bu_f2

Motif matrix
POACGT
11147.8314856981501571.5422292227854465.19189975362787402.4871908587194
2381.65597042912611135.8254248233056600.968193747841468.6032165330105
3371.72529420737504910.5594838795694308.8444388432241995.9235886031145
49.9539627716773842557.1909172182519.9539627716773849.953962771677384
52586.93309837917060.00.119707154113158370.0
633.32494756508692487.48803145114233.11991325852720533.119913258527205
7575.3764171511241938.2308918536322183.58789972498903889.8575968035362
8544.9202590303277547.32836395867781129.5931156551258365.21106688915296
9551.42930442501371170.083939873114408.8592430273892456.6803182077666

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GCN4#MA0303.190.002285271.087790.9648549ACTCACCGCTGAAGTATGACTCATCCCTTG-
MET31#MA0333.100.00398871.898620.9648549ACTCACCGCCGCCACACT-
Pax4#MA0068.1190.005269512.508290.9648549ACTCACCGCGAAAAATTTCCCATACTCCACTCCCCCCCC+
RUNX1#MA0002.210.006548753.117210.9648549ACTCACCGCAAACCACAGAC-
Fos#MA0099.120.006861863.266240.9648546ACTCACCGCTGACTCAC-
ABF1#MA0265.110.007938913.778920.9648549ACTCACCGCATATCACTTTATACGA-
Nkx3-2#MA0122.1-10.01077495.128870.9648548ACTCACCGCTCCACTTAA-
YPR022C#MA0436.100.01099525.233730.9648547ACTCACCGCCCCCACG+
z#MA0255.100.01169495.566790.9648549ACTCACCGCAATCACTCAA-
ZNF354C#MA0130.100.01170915.573510.9648546ACTCACCGCATCCAC+
Gamyb#MA0034.100.01247525.93820.9648549ACTCACCGCGACAACCGCC+
YGR067C#MA0425.110.01317556.271550.9648549ACTCACCGCACCCCACTTTTTTG+
Pax2#MA0067.100.01528237.2743518ACTCACCGCAGTCACGG+
Pax5#MA0014.110.01587717.5575119ACTCACCGCGGAGCACTGAAGCGTAACCG+
RREB1#MA0073.190.01808938.6104919ACTCACCGCCCCCAAACCACCCCCCCCCC+
AFT2#MA0270.1-10.01835728.7380518ACTCACCGCCACACCCC+
Gfi#MA0038.120.02044339.7310218ACTCACCGCCAAATCACTG+
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