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MacroAPE 1083:12-GCNGTGTRAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.233;0.233;232.301;0.233!2;61.978;101.588;28.892;40.542!3;75.259;51.493;59.415;46.833!4;55.92;0.233;163.566;13.281!5;26.096;29.824;5.359;17...")
 
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82-129A4;0.118259!12183-129A5;0.0662689!12184-129A6;0.115941!10809-111A8;0.0476697!10597-108E3;0.0935595!10717-109I6;0.637511!10455-106G5;0.831181!10534-107G3;0.351554!10429-106D6;0.296659!10464-106H5;0.637519!10827-111C8;0.351837!10789-110H6;0.303178!10828-111C9;0.675904!10788-110H5;0.372379!10792-110H9;0.309884!10765-110E9;0.745442!10829-111D1;0.577039!10830-111D2;0.571667!10831-111D3;0.527504!10832-111D4;0.20896!10833-111D5;0.48941!10764-110E8;0.614607!10770-110F5;0.578649!10399-106A3;0.763231!10400-106A4;0.848651!10405-106A9;0.985444!10834-111D6;0.627252!10835-111D7;0.712958!10836-111D8;0.243658!10837-111D9;0.413496!10699-109G6;0.0877121!10802-111A1;0.0746909!10796-110I4;0.3348!10010-101C1;0.495881!10810-111A9;0.907166!10421-106C7;0.608887!10708-109H6;0.80907!12235-129G3;0.310521!12236-129G4;0.483888!12237-129G5;0.927002!10167-103B5;0.65268!10151-102I7;0.733821!10428-106D5;0.731217!10795-110I3;0.0267134!10805-111A4;0.521883!10052-101G7;0.317276!10189-103D9;0.813883!10589-108D4;0.984558!10425-106D2;0.287318!10427-106D4;0.843497!10702-109G9;0.68711!10432-106D9;0.62463!10496-107C1;0.784372!10718-109I7;0.766811!10011-101C2;0.949134!10053-101G8;0.965615!10686-109F2;0.0470401!10084-102B3;0.50591!10012-101C3;0.598522!10085-102B4;0.63266!10482-107A5;0.502328!10419-106C5;0.570191!10080-102A8;0.979376!10760-110E4;0.934513!10709-109H7;0.283507!10710-109H8;0.256192!10703-109H1;0.225721!10719-109I8;0.45784!10642-109A3;0.34673!10177-103C6;0.172319!10164-103B2;0.664908!10173-103C2;0.478565!10166-103B4;0.851637!10083-102B2;0.739669!10188-103D8;0.610364!10552-107I3;0.952718!10553-107I4;0.863137!10013-101C4;0.249191!10536-107G5;0.474556!10618-108G6;0.384796!10423-106C9;0.748238!10785-110H2;0.716927!12238-129G6;0.778619!12239-129G7;0.385005!12240-129G8;0.599875!10416-106C2;0.540347!10801-110I9;0.145405!10766-110F1;0.0288721!10824-111C5;0.41311!10825-111C6;0.516496!10826-111C7;0.475595!10454-106G4;0.45277!10409-106B4;0.38745!10638-108I8;0.600638!10636-108I6;0.432431!10513-107D9;0.70406!10420-106C6;0.968904!10082-102B1;0.957651!10014-101C5;0.284541!10070-101I7;0.405257!10452-106G2;0.6824!10453-106G3;0.486533!10449-106F8;0.715073!10042-101F6;0.52699!10069-101I6;0.611608!10193-103E4;0.815397!10631-108I1;0.445831!10438-106E6;0.240359!10488-107B2;0.704351!10196-103E7;0.793588!10071-101I8;0.264921!10071-101I8;0.586881!10041-101F5;0.774552!10451-106G1;0.903676!10450-106F9;0.712953!10604-108F1;0.629191!10605-108F2;0.751838!10606-108F3;0.841003!10603-108E9;0.51055!10497-107C2;0.896457!10448-106F7;0.467761!10643-109A4;0.201844!10426-106D3;0.90623!10431-106D8;0.623487!10197-103E8;0.961081!10443-106F2;0.96517!10815-111B5;0.862392!10816-111B6;0.912281!10817-111B7;0.727961!10015-101C6;0.906509!10410-106B5;0.574495!10054-101G9;0.684202!10758-110E2;0.628979!10711-109H9;0.133041!10040-101F4;0.699681!10470-106I2;0.64836!10415-106C1;0.65937!10198-103E9;0.637686!10614-108G2;0.681462!10612-108F9;0.398783!10549-107H9;0.579303!10615-108G3;0.694165!10487-107B1;0.774188!10433-106E1;0.803067!10688-109F4;0.211696!10444-106F3;0.213965!10444-106F3;0.0337525!10485-107A8;0.0467383!10413-106B8;0.21772!10175-103C4;0.665621!10161-103A8;0.566798!12131-128D7;0.559606!10624-108H3;0.0927104!10712-109I1;0.961535!10205-103F7;0.75177!10206-103F8;0.749821!10207-103F9;0.925961!10050-101G5;0.269649!10051-101G6;0.634951!10016-101C7;0.872231!10046-101G1;0.569043!10778-110G4;0.558436!10633-108I3;0.889064!10818-111B8;0.955134!10819-111B9;0.670845!10820-111C1;0.646319!10484-107A7;0.662174!10808-111A7;0.799672!10169-103B7;0.613163!10153-102I9;0.63536!13425-144D5;0.714774!13433-144E4;0.582589!13437-144E8;0.478486!11904-125F5;0.451378!11905-125F6;0.00238972!10039-101F3;0.000287749!10791-110H8;0.680172!10017-101C8;0.397006!10045-101F9;0.683042!10509-107D5;0.994182!10839-111E2;0.379701!10692-109F8;0.999824!10079-102A7;0.28383!10078-102A6;0.822361!10721-110A1;0.506807!10569-108B2;0.249665!10570-108B3;0.105849!10571-108B4;0.16383!10647-109A8;0.11293!10752-110D5;0.382669!10782-110G8;0.52924!10726-110A6;0.422176!10018-101C9;0.259525!10086-102B5;0.742328!10182-103D2;0.66588!10165-103B3;0.820712!10499-107C4;0.655735!10408-106B3;0.999446!10019-101D1;0.234664!10068-101I5;0.875528!10075-102A3;0.988943!10077-102A5;0.984748!10727-110A7;0.828258!10775-110G1;0.351267!10412-106B7;0.243656!12231-129F8;0.927675!12232-129F9;0.16995!12233-129G1;0.204923!12234-129G2;0.202598!10414-106B9;0.214274!10170-103B8;0.891477!10183-103D3;0.690158!10150-102I6;0.761432!10174-103C3;0.798797!10155-103A2;0.678831!10038-101F2;0.739705!10838-111E1;0.606324!10759-110E3;0.342025!10514-107E1;0.579095!10465-106H6;0.266901!10691-109F7;0.961242!10843-111E6;0.839982!10844-111E7;0.199323!11747-123G1;0.508122!11748-123G2;0.00937753!11749-123G3;0.62026!11750-123G4;0.148915!11751-123G5;0.868124!11840-124H4;0.635637!11752-123G6;0.713163!11753-123G7;0.919772!11754-123G8;0.586634!11755-123G9;0.172154!11756-123H1;0.300085!11833-124G6;0.61662!11760-123H5;0.49766!11836-124G9;0.333621!11758-123H3;0.4961!11835-124G8;0.36223!11762-123H7;0.856513!11838-124H2;0.899064!11757-123H2;0.918064!11759-123H4;0.296658!11761-123H6;0.885835!11842-124H6;0.744548!11837-124H1;0.77616!10568-108B1;0.954318!13230-141I8;0.693243!13231-141I9;0.293833!10696-109G3;0.271108!10493-107B7;0.755441!10494-107B8;0.895546!10850-111F4;0.789931!10851-111F5;0.385872!10852-111F6;0.681033!10853-111F7;0.742657!10854-111F8;0.497151!10855-111F9;0.201498!10856-111G1;0.167818!10847-111F1;0.338608!10846-111E9;0.367735!10848-111F2;0.43079!10845-111E8;0.191564!10857-111G2;0.277515!10858-111G3;0.591459!10156-103A3;0.590619!11901-125F2;0.731594!11902-125F3;0.129884!11903-125F4;0.0377153!10689-109F5;0.155644!10648-109A9;0.836419!10784-110H1;0.749475!10744-110C6;0.548121!10772-110F7;0.926522!10474-106I6;0.565214!10600-108E6;0.414226!10684-109E9;0.622799!12226-129F3;0.401477!12227-129F4;0.504622!10508-107D4;0.694174!10539-107G8;0.304166!10607-108F4;0.349269!10555-107I6;0.859216!10774-110F9;0.231196!10637-108I7;0.224204!10663-109C6;0.283172!10728-110A8;0.461891!10729-110A9;0.791305!10430-106D7;0.249627!10730-110B1;0.45903!10813-111B3;0.191676!10812-111B2;0.863509!10037-101F1;0.11987!10172-103C1;0.597789!10163-103B1;0.732922!10076-102A4;0.819615!10073-102A1;0.610903!10036-101E9;0.636995!10195-103E6;0.624452!10277-104E7;0.671657!10434-106E2;0.970761!10550-107I1;0.887534!10545-107H5;0.828143!10544-107H4;0.496395!10704-109H2;0.839819!10510-107D6;0.910398!10558-107I9;0.573611!10020-101D2;0.709478!10732-110B3;0.888505!10049-101G4;0.551173!10698-109G5;0.226506!10437-106E5;0.940701!10417-106C3;0.662568!10035-101E8;0.194382!10171-103B9;0.689564!10157-103A4;0.705696!10034-101E7;0.808625!10072-101I9;0.698882!10199-103F1;0.657313!10200-103F2;0.137254!10697-109G4;0.773305!10723-110A3;0.805489!10179-103C8;0.824757!10160-103A7;0.39004!10180-103C9;0.111022!10162-103A9;0.730503!10021-101D3;0.737385!10840-111E3;0.913057!10706-109H4;0.623147!10033-101E6;0.643338!10032-101E5;0.684068!10490-107B4;0.572128!10439-106E7;0.602068!10022-101D4;0.914357!10176-103C5;0.636254!10469-106I1;0.576943!10067-101I4;0.437991!10411-106B6;0.559835!10471-106I3;0.170108!10030-101E3;0.35108!10475-106I7;0.56373!10787-110H4;0.174257!10477-106I9;0.358836!10695-109G2;0.56451!11771-123I7;0.937166!11772-123I8;0.451108!11773-123I9;0.822011!10093-102C3;0.0408396!10442-106F1;0.0707296!10442-106F1;0.698976!10201-103F3;0.553894!10639-108I9;0.729092!11843-124H7;0.0486124!11841-124H5;0.557512!10693-109F9;0.277385!10436-106E4;0.557808!10483-107A6;0.436751!10282-104F3;0.602151!10023-101D5;0.622055!10066-101I3;0.503312!10065-101I2;0.947713!10800-110I8;0.518671!10610-108F7;0.75495!10841-111E4;0.684886!10541-107H1;0.949717!10842-111E5;0.678368!10562-108A4;0.392241!10024-101D6;0.122443!10064-101I1;0.484393!10609-108F6;0.180757!10048-101G3;0.841017!10781-110G7;0.854074!10181-103D1;0.996857!10159-103A6;0.64491!10056-101H2;0.731738!10737-110B8;0.491613!10025-101D7;0.861088!10044-101F8;0.754419!10424-106D1;0.642575!10463-106H4;0.920337!10616-108G4;0.588537!10486-107A9;0.413309!10062-101H8;0.898228!10202-103F4;0.890833!10158-103A5;0.221218!10441-106E9;0.541215!10031-101E4;0.652172!10063-101H9;0.669604!10063-101H9;0.769263!11763-123H8;0.467678!11765-123I1;0.276158!11768-123I4;0.33846!10807-111A6;0.224244!10790-110H7;0.0884128!10798-110I6;0.254974!10786-110H3;0.0136513!10591-108D6;0.828967!10593-108D8;0.608809!10590-108D5;0.807458!10026-101D8;0.612017!10096-102C6;0.918578!10168-103B6;0.825355!10154-103A1;0.600072!10209-103G2;0.637742!10061-101H7;0.645522!10027-101D9;0.543268!10043-101F7;0.839631!10783-110G9;0.694567!10028-101E1;0.429135!10060-101H6;0.52877!10203-103F5;0.722533!10059-101H5;0.890621!10047-101G2;0.756127!10029-101E2;0.57397!10058-101H4;0.713333!10418-106C4;0.827787!10492-107B6;0.971038!10694-109G1;0.99401!10797-110I5;0.969626!10057-101H3;0.65418!10100-102D1;0.732135!10055-101H1;0.432012!10204-103F6;0.36265!10191-103E2;0.973651!10563-108A5;0.791944
|name=12-GCNGTGTRAC,CNhs13549,BestGuess:OVOL1_f1_HM09(0.643209920572819),T:233.0(7.98%),B:1564.2(3.42%),P:1e-30
|name=12-GCNGTGTRAC,CNhs13549,BestGuess:OVOL1_f1_HM09(0.643209920572819),T:233.0(7.98%),B:1564.2(3.42%),P:1e-30
|tomtom_result=Pax5#MA0014.1;8;0.00465307;2.21486;1;10;GCAGTGTAAC;GGAGCACTGAAGCGTAACCG;+!GCN4#MA0303.1;1;0.00565986;2.69409;1;10;GCAGTGTAAC;TGAAGTATGACTCATCCCTTG;-!REB1#MA0363.1;-1;0.00574433;2.7343;1;9;GCAGTGTAAC;CCGGGTAAC;-!NFE2L2#MA0150.1;1;0.00616255;2.93337;1;10;GCAGTGTAAC;TGCTGAGTCAT;-!HMRA2#MA0318.1;-2;0.00980413;4.66677;1;8;GCAGTGTAAC;CATGTAAT;+!caup#MA0217.1;-4;0.0104488;4.97364;1;5;GCAGTGTAAC;TGTTA;-!ara#MA0210.1;-4;0.0173317;8.24988;1;5;GCAGTGTAAC;TGTTA;-!Foxa2#MA0047.2;0;0.0189239;9.00777;1;10;GCAGTGTAAC;CCTAAGTAAACA;-!FOXC1#MA0032.1;0;0.0197563;9.40401;1;8;GCAGTGTAAC;GGTAAGTA;+!Ar#MA0007.1;8;0.0200079;9.52376;1;10;GCAGTGTAAC;ATAAGAACACCCTGTACCCGCC;+
}}
}}

Latest revision as of 14:39, 7 September 2012

Full Name: 12-GCNGTGTRAC,CNhs13549,BestGuess:OVOL1_f1_HM09(0.643209920572819),T:233.0(7.98%),B:1564.2(3.42%),P:1e-30

Motif matrix
POACGT
10.2330.233232.3010.233
261.978101.58828.89240.542
375.25951.49359.41546.833
455.920.233163.56613.281
526.09629.8245.359171.721
60.2335.825226.7090.233
70.23316.5430.233215.991
892.73413.74769.43457.085
9232.3010.2330.2330.233
100.233212.49620.0380.233

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax5#MA0014.180.004653072.21486110GCAGTGTAACGGAGCACTGAAGCGTAACCG+
GCN4#MA0303.110.005659862.69409110GCAGTGTAACTGAAGTATGACTCATCCCTTG-
REB1#MA0363.1-10.005744332.734319GCAGTGTAACCCGGGTAAC-
NFE2L2#MA0150.110.006162552.93337110GCAGTGTAACTGCTGAGTCAT-
HMRA2#MA0318.1-20.009804134.6667718GCAGTGTAACCATGTAAT+
caup#MA0217.1-40.01044884.9736415GCAGTGTAACTGTTA-
ara#MA0210.1-40.01733178.2498815GCAGTGTAACTGTTA-
Foxa2#MA0047.200.01892399.00777110GCAGTGTAACCCTAAGTAAACA-
FOXC1#MA0032.100.01975639.4040118GCAGTGTAACGGTAAGTA+
Ar#MA0007.180.02000799.52376110GCAGTGTAACATAAGAACACCCTGTACCCGCC+
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