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MacroAPE 1083:TTTTTCGCGGCT,motif429: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;201.888;201.888;207.496;2192.728!2;81.316;375.736;210.3;2136.648!3;143.004;305.636;322.46;2032.9!4;106.552;274.792;243.948;2178.708!5;201.88...")
 
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4479!10464-106H5;0.299154!10827-111C8;0.371393!10789-110H6;0.610837!10828-111C9;0.71205!10788-110H5;0.836288!10792-110H9;0.835075!10765-110E9;0.589486!10829-111D1;0.847269!10830-111D2;0.734536!10831-111D3;0.86368!10832-111D4;0.935099!10833-111D5;0.633082!10764-110E8;0.908904!10770-110F5;0.768986!10399-106A3;0.989977!10400-106A4;0.877321!10405-106A9;0.761948!10834-111D6;0.741371!10835-111D7;0.769015!10836-111D8;0.0558195!10837-111D9;0.211943!10699-109G6;0.885515!10802-111A1;0.675711!10796-110I4;0.691918!10010-101C1;0.953499!10810-111A9;0.0865559!10421-106C7;0.043717!10708-109H6;0.671327!12235-129G3;0.0140124!12236-129G4;0.864702!12237-129G5;0.221371!10167-103B5;0.952849!10151-102I7;0.699948!10428-106D5;0.592393!10795-110I3;0.914493!10805-111A4;0.37836!10052-101G7;0.210647!10189-103D9;0.23754!10589-108D4;0.148048!10425-106D2;0.604334!10427-106D4;0.214762!10702-109G9;0.744082!10432-106D9;0.850411!10496-107C1;0.551573!10718-109I7;0.823703!10011-101C2;0.887139!10053-101G8;0.307045!10686-109F2;0.0288287!10084-102B3;0.00748573!10012-101C3;0.688611!10085-102B4;0.722594!10482-107A5;0.682925!10419-106C5;0.0356845!10080-102A8;0.158378!10760-110E4;0.22773!10709-109H7;0.549641!10710-109H8;0.732579!10703-109H1;0.0665096!10719-109I8;0.182543!10642-109A3;0.217628!10177-103C6;0.144047!10164-103B2;0.741818!10173-103C2;0.597953!10166-103B4;0.711746!10083-102B2;0.608688!10188-103D8;0.802894!10552-107I3;0.848746!10553-107I4;0.126633!10013-101C4;0.0603564!10536-107G5;0.333386!10618-108G6;0.420804!10423-106C9;0.160506!10785-110H2;0.0690406!12238-129G6;0.178249!12239-129G7;0.0271674!12240-129G8;0.892777!10416-106C2;0.0391647!10801-110I9;0.931309!10766-110F1;0.71468!10824-111C5;0.87909!10825-111C6;0.107338!10826-111C7;0.0737679!10454-106G4;0.115516!10409-106B4;0.151045!10638-108I8;0.735736!10636-108I6;0.204764!10513-107D9;0.378849!10420-106C6;0.00545503!10082-102B1;0.0903975!10014-101C5;0.805753!10070-101I7;0.0924437!10452-106G2;0.521716!10453-106G3;0.352169!10449-106F8;0.339618!10042-101F6;0.466675!10069-101I6;0.659691!10193-103E4;0.67889!10631-108I1;0.680697!10438-106E6;0.271382!10488-107B2;0.303126!10196-103E7;0.272907!10071-101I8;0.324416!10071-101I8;0.141545!10041-101F5;0.889838!10451-106G1;0.108822!10450-106F9;0.030397!10604-108F1;0.0340632!10605-108F2;0.0466661!10606-108F3;0.24916!10603-108E9;0.0816859!10497-107C2;0.172292!10448-106F7;0.181932!10643-109A4;0.00478093!10426-106D3;0.80549!10431-106D8;0.299839!10197-103E8;0.160055!10443-106F2;0.109788!10815-111B5;0.217392!10816-111B6;0.150635!10817-111B7;0.0649945!10015-101C6;0.132683!10410-106B5;0.421949!10054-101G9;0.0029431!10758-110E2;0.500859!10711-109H9;0.0659616!10040-101F4;0.0309386!10470-106I2;0.77385!10415-106C1;0.163077!10198-103E9;0.709439!10614-108G2;0.240393!10612-108F9;0.505908!10549-107H9;0.54615!10615-108G3;0.0547544!10487-107B1;0.417894!10433-106E1;0.919814!10688-109F4;0.0673997!10444-106F3;0.280889!10444-106F3;0.011731!10485-107A8;0.0117928!10413-106B8;0.11062!10175-103C4;0.0372423!10161-103A8;0.842343!12131-128D7;0.561324!10624-108H3;0.894328!10712-109I1;0.980214!10205-103F7;0.734554!10206-103F8;0.265664!10207-103F9;0.566757!10050-101G5;0.398996!10051-101G6;0.997955!10016-101C7;0.510338!10046-101G1;0.444777!10778-110G4;0.983927!10633-108I3;0.523335!10818-111B8;0.0142058!10819-111B9;0.00721025!10820-111C1;0.00650586!10484-107A7;0.00687758!10808-111A7;0.224443!10169-103B7;0.681325!10153-102I9;0.574245!13425-144D5;0.542932!13433-144E4;0.222848!13437-144E8;0.21079!11904-125F5;0.235392!11905-125F6;0.623184!10039-101F3;0.91349!10791-110H8;0.851035!10017-101C8;0.559842!10045-101F9;0.0981919!10509-107D5;0.899401!10839-111E2;0.875801!10692-109F8;0.866168!10079-102A7;0.169039!10078-102A6;0.303753!10721-110A1;0.465651!10569-108B2;0.00960314!10570-108B3;0.0960926!10571-108B4;0.199353!10647-109A8;0.78295!10752-110D5;0.00497491!10782-110G8;0.842914!10726-110A6;0.0896096!10018-101C9;0.0884807!10086-102B5;0.00110757!10182-103D2;0.84792!10165-103B3;0.953955!10499-107C4;0.50905!10408-106B3;0.680402!10019-101D1;0.481625!10068-101I5;0.154375!10075-102A3;0.10801!10077-102A5;0.0530113!10727-110A7;0.0325293!10775-110G1;0.963735!10412-106B7;0.851002!12231-129F8;0.433353!12232-129F9;0.431893!12233-129G1;0.319227!12234-129G2;0.18563!10414-106B9;0.304581!10170-103B8;0.305336!10183-103D3;0.843067!10150-102I6;0.7838!10174-103C3;0.56326!10155-103A2;0.452419!10038-101F2;0.306538!10838-111E1;0.580538!10759-110E3;0.186485!10514-107E1;0.0916623!10465-106H6;0.0448234!10691-109F7;0.175554!10843-111E6;0.656421!10844-111E7;0.0920572!11747-123G1;0.127031!11748-123G2;0.0819222!11749-123G3;0.173865!11750-123G4;0.34607!11751-123G5;0.928687!11840-124H4;0.622995!11752-123G6;0.611416!11753-123G7;0.618601!11754-123G8;0.748738!11755-123G9;0.195602!11756-123H1;0.0337117!11833-124G6;0.835371!11760-123H5;0.489946!11836-124G9;0.678233!11758-123H3;0.959449!11835-124G8;0.818647!11762-123H7;0.637805!11838-124H2;0.906189!11757-123H2;0.462892!11759-123H4;0.896457!11761-123H6;0.72009!11842-124H6;0.41929!11837-124H1;0.288436!10568-108B1;0.407535!13230-141I8;0.0535376!13231-141I9;0.418689!10696-109G3;0.44376!10493-107B7;0.646586!10494-107B8;0.302648!10850-111F4;0.0712718!10851-111F5;0.257487!10852-111F6;0.00415832!10853-111F7;0.785058!10854-111F8;0.0762922!10855-111F9;0.381749!10856-111G1;0.138659!10847-111F1;0.0176718!10846-111E9;0.0731172!10848-111F2;0.17264!10845-111E8;0.286307!10857-111G2;0.508718!10858-111G3;0.078407!10156-103A3;0.508812!11901-125F2;0.637967!11902-125F3;0.136761!11903-125F4;0.352953!10689-109F5;0.167757!10648-109A9;0.354702!10784-110H1;0.35747!10744-110C6;0.19754!10772-110F7;0.584681!10474-106I6;0.985798!10600-108E6;0.36833!10684-109E9;0.0364651!12226-129F3;2.5754e-05!12227-129F4;0.291037!10508-107D4;0.876102!10539-107G8;0.244405!10607-108F4;0.178506!10555-107I6;0.0756356!10774-110F9;0.184808!10637-108I7;0.0739261!10663-109C6;0.0832183!10728-110A8;0.0509104!10729-110A9;0.0221454!10430-106D7;0.258002!10730-110B1;0.486438!10813-111B3;0.22269!10812-111B2;0.704361!10037-101F1;0.711448!10172-103C1;0.72364!10163-103B1;0.70925!10076-102A4;0.528883!10073-102A1;0.834109!10036-101E9;0.798039!10195-103E6;0.885178!10277-104E7;0.783941!10434-106E2;0.97085!10550-107I1;0.28284!10545-107H5;0.347884!10544-107H4;0.324654!10704-109H2;0.278896!10510-107D6;0.189087!10558-107I9;0.103691!10020-101D2;0.0160463!10732-110B3;0.0731454!10049-101G4;0.0379351!10698-109G5;0.00664037!10437-106E5;0.0279793!10417-106C3;0.949001!10035-101E8;0.218927!10171-103B9;0.794077!10157-103A4;0.792873!10034-101E7;0.535025!10072-101I9;0.793768!10199-103F1;0.687292!10200-103F2;0.06495!10697-109G4;0.249224!10723-110A3;0.0479551!10179-103C8;0.426583!10160-103A7;0.870276!10180-103C9;0.873541!10162-103A9;0.411283!10021-101D3;0.3085!10840-111E3;0.388178!10706-109H4;0.719646!10033-101E6;0.316969!10032-101E5;0.582976!10490-107B4;0.864559!10439-106E7;0.478265!10022-101D4;0.362059!10176-103C5;0.347493!10469-106I1;0.781309!10067-101I4;0.111314!10411-106B6;0.550934!10471-106I3;0.251857!10030-101E3;0.903629!10475-106I7;0.485834!10787-110H4;0.477745!10477-106I9;0.0495861!10695-109G2;0.0128593!11771-123I7;0.508103!11772-123I8;0.184819!11773-123I9;0.352826!10093-102C3;0.577104!10442-106F1;0.137467!10442-106F1;0.776861!10201-103F3;0.843778!10639-108I9;0.178718!11843-124H7;0.803128!11841-124H5;0.537053!10693-109F9;0.0447804!10436-106E4;0.233215!10483-107A6;0.135569!10282-104F3;0.524049!10023-101D5;0.313573!10066-101I3;0.344522!10065-101I2;0.864144!10800-110I8;0.787627!10610-108F7;0.0383137!10841-111E4;0.379431!10541-107H1;0.0483858!10842-111E5;0.145299!10562-108A4;0.2632!10024-101D6;0.416508!10064-101I1;0.0826734!10609-108F6;0.556246!10048-101G3;0.663252!10781-110G7;0.46351!10181-103D1;0.71564!10159-103A6;0.838324!10056-101H2;0.482918!10737-110B8;0.984621!10025-101D7;0.0473564!10044-101F8;0.084803!10424-106D1;0.174738!10463-106H4;0.989484!10616-108G4;0.605426!10486-107A9;0.800966!10062-101H8;0.618549!10202-103F4;0.934693!10158-103A5;0.0231531!10441-106E9;0.444193!10031-101E4;0.0268986!10063-101H9;0.850738!10063-101H9;0.69648!11763-123H8;0.192912!11765-123I1;0.928613!11768-123I4;0.494277!10807-111A6;0.993261!10790-110H7;0.148289!10798-110I6;0.363067!10786-110H3;0.000552627!10591-108D6;0.4454!10593-108D8;0.418853!10590-108D5;0.356745!10026-101D8;0.244282!10096-102C6;0.214037!10168-103B6;0.95238!10154-103A1;0.699029!10209-103G2;0.499176!10061-101H7;0.275339!10027-101D9;0.61811!10043-101F7;0.484749!10783-110G9;0.0841083!10028-101E1;0.224785!10060-101H6;0.0374321!10203-103F5;0.464615!10059-101H5;0.451098!10047-101G2;0.687102!10029-101E2;0.149807!10058-101H4;0.05583!10418-106C4;0.562689!10492-107B6;0.2127!10694-109G1;0.107258!10797-110I5;0.0539519!10057-101H3;0.571636!10100-102D1;0.93882!10055-101H1;0.384924!10204-103F6;0.905063!10191-103E2;0.275489!10563-108A5;0.133749
|name=TTTTTCGCGGCT,motif429,CNhs12610,T:2804.0(67.65%),B:39929.4(58.51%),P:1e-33
|name=TTTTTCGCGGCT,motif429,CNhs12610,T:2804.0(67.65%),B:39929.4(58.51%),P:1e-33
|tomtom_result=SWI4#MA0401.1;-2;0.000987478;0.47004;0.940079;8;TTTTTCGCGGCT;TTTCGCGT;-!STP1#MA0394.1;-5;0.00329222;1.56709;1;7;TTTTTCGCGGCT;TGCGGCGC;+!YDR026C#MA0421.1;-1;0.00385042;1.8328;1;10;TTTTTCGCGGCT;TTTACCCGGC;+!E2F1#MA0024.1;-2;0.00590407;2.81034;1;8;TTTTTCGCGGCT;TTTGGCGC;+!PDR1#MA0352.1;-3;0.00643945;3.06518;1;8;TTTTTCGCGGCT;TCCGCGGA;-!CUP2#MA0287.1;1;0.00775288;3.69037;1;10;TTTTTCGCGGCT;CATTTCTGCTG;-!STB3#MA0390.1;8;0.00869244;4.1376;1;12;TTTTTCGCGGCT;GTCCAAAATTTTTCACTCTGG;+!hb#MA0049.1;0;0.0141275;6.7247;1;10;TTTTTCGCGGCT;TTTTTTATGC;-!SFP1#MA0378.1;11;0.014774;7.03245;1;10;TTTTTCGCGGCT;ATTGAAAAAAATTTTCTACGG;+!NHP10#MA0344.1;-3;0.0191268;9.10436;1;8;TTTTTCGCGGCT;TCCCCGGC;-!MBP1#MA0329.1;-3;0.0194306;9.24895;1;7;TTTTTCGCGGCT;TACGCGT;-
}}
}}

Latest revision as of 14:43, 7 September 2012

Full Name: TTTTTCGCGGCT,motif429,CNhs12610,T:2804.0(67.65%),B:39929.4(58.51%),P:1e-33

Motif matrix
POACGT
1201.888201.888207.4962192.728
281.316375.736210.32136.648
3143.004305.636322.462032.9
4106.552274.792243.9482178.708
5201.888333.676300.0281968.408
6269.1842058.136196.28280.4
7322.46305.6361909.524266.38
8207.4961915.132420.6260.772
9288.812193.4761999.252322.46
10112.16241.1442145.06305.636
11128.9842391.812128.984154.22
12112.16257.968112.162321.712

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SWI4#MA0401.1-20.0009874780.470040.9400798TTTTTCGCGGCTTTTCGCGT-
STP1#MA0394.1-50.003292221.5670917TTTTTCGCGGCTTGCGGCGC+
YDR026C#MA0421.1-10.003850421.8328110TTTTTCGCGGCTTTTACCCGGC+
E2F1#MA0024.1-20.005904072.8103418TTTTTCGCGGCTTTTGGCGC+
PDR1#MA0352.1-30.006439453.0651818TTTTTCGCGGCTTCCGCGGA-
CUP2#MA0287.110.007752883.69037110TTTTTCGCGGCTCATTTCTGCTG-
STB3#MA0390.180.008692444.1376112TTTTTCGCGGCTGTCCAAAATTTTTCACTCTGG+
hb#MA0049.100.01412756.7247110TTTTTCGCGGCTTTTTTTATGC-
SFP1#MA0378.1110.0147747.03245110TTTTTCGCGGCTATTGAAAAAAATTTTCTACGG+
NHP10#MA0344.1-30.01912689.1043618TTTTTCGCGGCTTCCCCGGC-
MBP1#MA0329.1-30.01943069.2489517TTTTTCGCGGCTTACGCGT-
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