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MacroAPE 1083:AAGATCGAS,motif641: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1781.096;16.064;208.832;2.008!2;1417.648;2.008;2.008;586.336!3;36.144;142.568;1827.28;2.008!4;1483.912;2.008;236.944;285.136!5;279.112;2.008...")
 
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61-123H6;0.126329!11842-124H6;0.0839137!11837-124H1;0.158168!10568-108B1;0.0593545!13230-141I8;0.728696!13231-141I9;0.542187!10696-109G3;0.399044!10493-107B7;0.0314425!10494-107B8;0.43496!10850-111F4;0.296705!10851-111F5;0.412854!10852-111F6;0.258772!10853-111F7;0.73488!10854-111F8;0.0771838!10855-111F9;0.0730248!10856-111G1;0.835855!10847-111F1;0.148381!10846-111E9;0.963317!10848-111F2;0.11387!10845-111E8;0.0191665!10857-111G2;0.074042!10858-111G3;0.287364!10156-103A3;0.372142!11901-125F2;0.0772176!11902-125F3;0.0456686!11903-125F4;0.0484679!10689-109F5;0.140612!10648-109A9;0.481987!10784-110H1;0.512167!10744-110C6;0.309571!10772-110F7;0.242026!10474-106I6;0.151157!10600-108E6;0.0571429!10684-109E9;0.596007!12226-129F3;0.559301!12227-129F4;0.242116!10508-107D4;0.598713!10539-107G8;0.451571!10607-108F4;0.390573!10555-107I6;0.0453583!10774-110F9;0.325736!10637-108I7;0.00289487!10663-109C6;0.110254!10728-110A8;0.075027!10729-110A9;0.0881962!10430-106D7;0.0746484!10730-110B1;0.0374967!10813-111B3;0.0409541!10812-111B2;0.464404!10037-101F1;0.51421!10172-103C1;0.122478!10163-103B1;0.223855!10076-102A4;0.0606633!10073-102A1;0.102812!10036-101E9;0.268084!10195-103E6;0.125979!10277-104E7;0.113676!10434-106E2;0.0465414!10550-107I1;0.0682638!10545-107H5;0.121003!10544-107H4;0.0093378!10704-109H2;0.0338281!10510-107D6;0.434567!10558-107I9;0.861178!10020-101D2;0.522708!10732-110B3;0.103402!10049-101G4;0.842835!10698-109G5;0.591315!10437-106E5;0.0153704!10417-106C3;0.720476!10035-101E8;0.899857!10171-103B9;0.119976!10157-103A4;0.228648!10034-101E7;0.101128!10072-101I9;0.140647!10199-103F1;0.315384!10200-103F2;0.220027!10697-109G4;0.073392!10723-110A3;0.129734!10179-103C8;0.539797!10160-103A7;0.275156!10180-103C9;0.230321!10162-103A9;0.799528!10021-101D3;0.46804!10840-111E3;0.18293!10706-109H4;0.122953!10033-101E6;0.799217!10032-101E5;0.117387!10490-107B4;0.157645!10439-106E7;0.0557126!10022-101D4;0.355056!10176-103C5;0.0345245!10469-106I1;0.216271!10067-101I4;0.55009!10411-106B6;0.0359264!10471-106I3;0.256816!10030-101E3;0.157042!10475-106I7;0.0194799!10787-110H4;0.0468533!10477-106I9;0.0439242!10695-109G2;0.254293!11771-123I7;0.759435!11772-123I8;0.708525!11773-123I9;0.261207!10093-102C3;0.900983!10442-106F1;0.193417!10442-106F1;0.437033!10201-103F3;0.818433!10639-108I9;0.144597!11843-124H7;0.758473!11841-124H5;0.545891!10693-109F9;0.30018!10436-106E4;0.106057!10483-107A6;0.0194762!10282-104F3;0.0732773!10023-101D5;0.472421!10066-101I3;0.626952!10065-101I2;0.194725!10800-110I8;0.10867!10610-108F7;0.122405!10841-111E4;0.373415!10541-107H1;0.00830912!10842-111E5;0.0784095!10562-108A4;0.0852754!10024-101D6;0.715633!10064-101I1;0.106707!10609-108F6;0.036916!10048-101G3;0.0246576!10781-110G7;0.144615!10181-103D1;0.416344!10159-103A6;0.0172131!10056-101H2;0.0176374!10737-110B8;0.039497!10025-101D7;0.100578!10044-101F8;0.0578041!10424-106D1;0.00483615!10463-106H4;0.0205641!10616-108G4;0.0129995!10486-107A9;0.435518!10062-101H8;0.00481968!10202-103F4;0.0158714!10158-103A5;0.0564013!10441-106E9;0.0267044!10031-101E4;0.482297!10063-101H9;0.106363!10063-101H9;0.300874!11763-123H8;0.034146!11765-123I1;0.613362!11768-123I4;0.424704!10807-111A6;0.405528!10790-110H7;0.0771648!10798-110I6;0.0666759!10786-110H3;0.411546!10591-108D6;0.342962!10593-108D8;0.0625389!10590-108D5;0.358582!10026-101D8;0.00466057!10096-102C6;0.127076!10168-103B6;0.61665!10154-103A1;0.0659102!10209-103G2;0.0409016!10061-101H7;0.0514157!10027-101D9;0.134158!10043-101F7;0.780917!10783-110G9;0.0889554!10028-101E1;0.530144!10060-101H6;0.162879!10203-103F5;0.288235!10059-101H5;0.0888946!10047-101G2;0.152803!10029-101E2;0.0119095!10058-101H4;0.00454053!10418-106C4;0.0924325!10492-107B6;0.578478!10694-109G1;0.00764596!10797-110I5;0.540546!10057-101H3;0.422411!10100-102D1;0.300554!10055-101H1;0.0677975!10204-103F6;0.11666!10191-103E2;0.0128149!10563-108A5;0.0151418
|name=AAGATCGAS,motif641,CNhs13817,T:2008.0(51.63%),B:32508.3(42.50%),P:1e-29
|name=AAGATCGAS,motif641,CNhs13817,T:2008.0(51.63%),B:32508.3(42.50%),P:1e-29
|tomtom_result=ECM23#MA0293.1;1;0.00172125;0.819314;1;9;AAGATCGAG;AAAGATCTAAA;+!GAT4#MA0302.1;1;0.00281295;1.33897;1;9;AAGATCGAG;AAAGATCTAAA;+!GAT3#MA0301.1;-1;0.00499962;2.37982;1;8;AAGATCGAG;AGATCTACA;+!SRD1#MA0389.1;-1;0.00508783;2.42181;1;8;AAGATCGAG;AGATCTAC;+
}}
}}

Latest revision as of 14:44, 7 September 2012

Full Name: AAGATCGAS,motif641,CNhs13817,T:2008.0(51.63%),B:32508.3(42.50%),P:1e-29

Motif matrix
POACGT
11781.09616.064208.8322.008
21417.6482.0082.008586.336
336.144142.5681827.282.008
41483.9122.008236.944285.136
5279.1122.008100.41626.48
62.0081564.232439.7522.008
744.17640.161921.6562.008
81353.392170.68481.922.008
9385.536652.6805.208164.656

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ECM23#MA0293.110.001721250.81931419AAGATCGAGAAAGATCTAAA+
GAT4#MA0302.110.002812951.3389719AAGATCGAGAAAGATCTAAA+
GAT3#MA0301.1-10.004999622.3798218AAGATCGAGAGATCTACA+
SRD1#MA0389.1-10.005087832.4218118AAGATCGAGAGATCTAC+
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