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MacroAPE 1083:5-SBGTYRTYWGRS: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;182.47;444.61;457.46;200.46!2;1.285;381.645;457.46;444.61!3;1.285;1.285;989.45;292.98!4;313.54;1.285;1.285;968.89!5;1.285;553.835;1.285;728....")
 
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!12179-129A1;0.263289!12180-129A2;0.400621!12181-129A3;0.373201!12176-128I7;0.86979!12177-128I8;0.838954!12182-129A4;0.853866!12183-129A5;0.458936!12184-129A6;0.217451!10809-111A8;0.817985!10597-108E3;0.261052!10717-109I6;0.189377!10455-106G5;0.935688!10534-107G3;0.761691!10429-106D6;0.826749!10464-106H5;0.672875!10827-111C8;0.38634!10789-110H6;0.188016!10828-111C9;0.0774936!10788-110H5;0.0642996!10792-110H9;0.0472627!10765-110E9;0.308984!10829-111D1;0.0183307!10830-111D2;0.972711!10831-111D3;0.418342!10832-111D4;0.00784019!10833-111D5;0.527734!10764-110E8;0.183525!10770-110F5;0.0915971!10399-106A3;0.130584!10400-106A4;0.217148!10405-106A9;0.289046!10834-111D6;0.422117!10835-111D7;0.00980351!10836-111D8;0.587935!10837-111D9;0.837765!10699-109G6;0.732422!10802-111A1;0.174861!10796-110I4;0.258209!10010-101C1;0.185248!10810-111A9;0.0159372!10421-106C7;0.00503153!10708-109H6;0.681365!12235-129G3;0.309988!12236-129G4;0.384212!12237-129G5;0.467586!10167-103B5;0.28749!10151-102I7;0.00171831!10428-106D5;0.0206435!10795-110I3;0.667361!10805-111A4;0.719748!10052-101G7;0.00857826!10189-103D9;0.696169!10589-108D4;0.121291!10425-106D2;2.71e-05!10427-106D4;0.53076!10702-109G9;0.0584718!10432-106D9;0.352193!10496-107C1;0.885572!10718-109I7;0.34531!10011-101C2;0.443955!10053-101G8;0.164701!10686-109F2;0.571219!10084-102B3;0.27493!10012-101C3;0.0641942!10085-102B4;0.0399908!10482-107A5;0.0499029!10419-106C5;0.0637504!10080-102A8;0.0882255!10760-110E4;0.0923043!10709-109H7;0.902461!10710-109H8;0.0758502!10703-109H1;0.12142!10719-109I8;0.126612!10642-109A3;0.259719!10177-103C6;0.152229!10164-103B2;0.000620422!10173-103C2;0.00259057!10166-103B4;0.0872724!10083-102B2;0.145697!10188-103D8;0.103556!10552-107I3;0.0239149!10553-107I4;0.101934!10013-101C4;0.00199945!10536-107G5;0.333497!10618-108G6;0.0003917!10423-106C9;0.214965!10785-110H2;0.648063!12238-129G6;0.710563!12239-129G7;0.814729!12240-129G8;0.0109603!10416-106C2;0.283384!10801-110I9;0.579479!10766-110F1;0.311914!10824-111C5;0.115579!10825-111C6;0.909978!10826-111C7;0.99136!10454-106G4;0.742355!10409-106B4;0.73637!10638-108I8;0.564099!10636-108I6;0.0529957!10513-107D9;0.0283826!10420-106C6;0.711902!10082-102B1;0.0913523!10014-101C5;0.0024069!10070-101I7;0.0476416!10452-106G2;0.136383!10453-106G3;0.0178233!10449-106F8;0.490705!10042-101F6;0.528395!10069-101I6;0.0145321!10193-103E4;0.0835199!10631-108I1;0.0213435!10438-106E6;0.765069!10488-107B2;0.00440511!10196-103E7;0.0956964!10071-101I8;0.51582!10071-101I8;0.279112!10041-101F5;0.100096!10451-106G1;0.675035!10450-106F9;0.00500285!10604-108F1;0.107628!10605-108F2;0.195903!10606-108F3;0.0694581!10603-108E9;0.118489!10497-107C2;0.105833!10448-106F7;0.0235961!10643-109A4;0.452667!10426-106D3;0.0625139!10431-106D8;0.400212!10197-103E8;0.504503!10443-106F2;0.302072!10815-111B5;0.985533!10816-111B6;0.719024!10817-111B7;0.371996!10015-101C6;0.562349!10410-106B5;0.0455715!10054-101G9;0.0306057!10758-110E2;0.946676!10711-109H9;0.650577!10040-101F4;0.636687!10470-106I2;0.0127732!10415-106C1;0.00207278!10198-103E9;0.505106!10614-108G2;0.369449!10612-108F9;0.0716102!10549-107H9;0.0772704!10615-108G3;0.0666367!10487-107B1;5.07596e-05!10433-106E1;0.256292!10688-109F4;0.0751982!10444-106F3;0.12744!10444-106F3;0.148659!10485-107A8;0.175678!10413-106B8;0.193548!10175-103C4;0.149346!10161-103A8;0.0282583!12131-128D7;0.140914!10624-108H3;0.105063!10712-109I1;0.884432!10205-103F7;0.55129!10206-103F8;0.757744!10207-103F9;0.555733!10050-101G5;0.774197!10051-101G6;0.192467!10016-101C7;0.49719!10046-101G1;0.506544!10778-110G4;0.609653!10633-108I3;0.0224572!10818-111B8;0.410005!10819-111B9;0.736603!10820-111C1;0.796246!10484-107A7;0.676764!10808-111A7;0.00135377!10169-103B7;0.347583!10153-102I9;0.00814497!13425-144D5;0.0200355!13433-144E4;0.439101!13437-144E8;0.233017!11904-125F5;0.228609!11905-125F6;0.128811!10039-101F3;0.012194!10791-110H8;0.0122246!10017-101C8;0.674539!10045-101F9;0.339661!10509-107D5;0.570971!10839-111E2;0.945815!10692-109F8;0.0423548!10079-102A7;0.198429!10078-102A6;0.0394414!10721-110A1;0.313423!10569-108B2;0.00577886!10570-108B3;0.0105783!10571-108B4;0.191902!10647-109A8;0.0619666!10752-110D5;0.201652!10782-110G8;0.896239!10726-110A6;0.0131616!10018-101C9;0.919712!10086-102B5;0.148731!10182-103D2;0.00406805!10165-103B3;0.00343581!10499-107C4;0.0128416!10408-106B3;0.0499157!10019-101D1;0.144125!10068-101I5;0.482309!10075-102A3;0.00454184!10077-102A5;0.321921!10727-110A7;0.00194997!10775-110G1;0.819684!10412-106B7;0.568153!12231-129F8;0.11356!12232-129F9;0.705127!12233-129G1;0.648604!12234-129G2;0.488833!10414-106B9;0.9933!10170-103B8;0.00378479!10183-103D3;0.0041127!10150-102I6;0.0142037!10174-103C3;0.026942!10155-103A2;0.000185461!10038-101F2;0.00759925!10838-111E1;0.0230971!10759-110E3;0.544702!10514-107E1;0.307111!10465-106H6;0.766292!10691-109F7;0.154869!10843-111E6;0.213359!10844-111E7;0.0579217!11747-123G1;0.0580741!11748-123G2;0.190675!11749-123G3;0.0260136!11750-123G4;0.543509!11751-123G5;0.852768!11840-124H4;0.33715!11752-123G6;0.218042!11753-123G7;0.905956!11754-123G8;0.674147!11755-123G9;0.288866!11756-123H1;0.431707!11833-124G6;0.0402579!11760-123H5;0.476512!11836-124G9;0.0585152!11758-123H3;0.112788!11835-124G8;0.270149!11762-123H7;0.16089!11838-124H2;0.94174!11757-123H2;0.626235!11759-123H4;0.980825!11761-123H6;0.108786!11842-124H6;0.354636!11837-124H1;0.179367!10568-108B1;0.0347615!13230-141I8;0.18723!13231-141I9;0.001653!10696-109G3;0.000822539!10493-107B7;0.272497!10494-107B8;0.019189!10850-111F4;0.674374!10851-111F5;0.0870297!10852-111F6;0.150071!10853-111F7;0.119976!10854-111F8;0.739444!10855-111F9;0.571665!10856-111G1;0.101111!10847-111F1;0.355731!10846-111E9;0.465827!10848-111F2;0.00449678!10845-111E8;0.206177!10857-111G2;0.138791!10858-111G3;0.939295!10156-103A3;0.413243!11901-125F2;0.0451236!11902-125F3;0.472672!11903-125F4;0.385767!10689-109F5;0.636522!10648-109A9;0.678915!10784-110H1;0.287599!10744-110C6;0.531068!10772-110F7;0.606728!10474-106I6;0.375109!10600-108E6;0.491865!10684-109E9;0.427099!12226-129F3;0.722115!12227-129F4;0.412255!10508-107D4;0.150406!10539-107G8;0.0694572!10607-108F4;0.0888326!10555-107I6;0.0763879!10774-110F9;0.133517!10637-108I7;0.936615!10663-109C6;0.614913!10728-110A8;0.208405!10729-110A9;0.312344!10430-106D7;0.0555267!10730-110B1;0.598655!10813-111B3;9.90242e-06!10812-111B2;0.283071!10037-101F1;0.306399!10172-103C1;0.00853398!10163-103B1;0.00409487!10076-102A4;0.049407!10073-102A1;0.011704!10036-101E9;0.0540634!10195-103E6;0.0214412!10277-104E7;0.0303355!10434-106E2;0.0181454!10550-107I1;0.017362!10545-107H5;0.0891895!10544-107H4;0.185086!10704-109H2;0.445577!10510-107D6;0.102018!10558-107I9;0.743442!10020-101D2;0.914659!10732-110B3;0.318064!10049-101G4;0.820344!10698-109G5;0.584748!10437-106E5;0.346543!10417-106C3;0.729406!10035-101E8;0.0747442!10171-103B9;0.0190777!10157-103A4;0.00349687!10034-101E7;0.0395155!10072-101I9;0.0174919!10199-103F1;0.0459116!10200-103F2;0.390711!10697-109G4;0.31831!10723-110A3;0.0354804!10179-103C8;0.653222!10160-103A7;0.00903105!10180-103C9;0.0154794!10162-103A9;5.30698e-07!10021-101D3;1.88332e-07!10840-111E3;0.58759!10706-109H4;0.319852!10033-101E6;0.667224!10032-101E5;0.0109545!10490-107B4;0.0177552!10439-106E7;0.917809!10022-101D4;0.756251!10176-103C5;0.434437!10469-106I1;0.00360177!10067-101I4;0.0657192!10411-106B6;0.430728!10471-106I3;0.685468!10030-101E3;0.0595749!10475-106I7;0.823074!10787-110H4;0.0297659!10477-106I9;0.0020405!10695-109G2;0.440197!11771-123I7;0.0249699!11772-123I8;0.727808!11773-123I9;0.413618!10093-102C3;0.513232!10442-106F1;0.826957!10442-106F1;0.794491!10201-103F3;0.759349!10639-108I9;0.72884!11843-124H7;0.000266413!11841-124H5;0.00714583!10693-109F9;0.282156!10436-106E4;0.00806474!10483-107A6;0.429402!10282-104F3;0.766334!10023-101D5;0.259969!10066-101I3;0.201161!10065-101I2;0.0114405!10800-110I8;0.0970418!10610-108F7;0.0958476!10841-111E4;0.00245372!10541-107H1;0.00384511!10842-111E5;0.305391!10562-108A4;0.230618!10024-101D6;0.019309!10064-101I1;0.076173!10609-108F6;0.15872!10048-101G3;0.000696275!10781-110G7;0.174641!10181-103D1;0.00512922!10159-103A6;0.0929938!10056-101H2;0.10455!10737-110B8;0.193827!10025-101D7;0.0652963!10044-101F8;0.0566518!10424-106D1;0.0906006!10463-106H4;0.192161!10616-108G4;0.426823!10486-107A9;0.342253!10062-101H8;7.60511e-05!10202-103F4;0.750186!10158-103A5;0.522523!10441-106E9;0.20007!10031-101E4;0.107041!10063-101H9;0.0255145!10063-101H9;0.0641314!11763-123H8;0.553185!11765-123I1;3.36713e-06!11768-123I4;0.00354788!10807-111A6;1.93864e-05!10790-110H7;0.983124!10798-110I6;0.687025!10786-110H3;0.538156!10591-108D6;0.466574!10593-108D8;0.728732!10590-108D5;0.535236!10026-101D8;0.921045!10096-102C6;1.55715e-10!10168-103B6;4.85466e-16!10154-103A1;0.00684362!10209-103G2;0.032604!10061-101H7;0.870535!10027-101D9;0.568748!10043-101F7;0.919073!10783-110G9;0.758184!10028-101E1;0.387471!10060-101H6;0.638141!10203-103F5;0.332955!10059-101H5;0.251524!10047-101G2;0.156242!10029-101E2;0.141009!10058-101H4;0.0335658!10418-106C4;0.555814!10492-107B6;0.543541!10694-109G1;0.510779!10797-110I5;0.169054!10057-101H3;0.0576205!10100-102D1;0.131865!10055-101H1;0.89118!10204-103F6;0.644055!10191-103E2;0.284045!10563-108A5;0.075649
|name=5-SBGTYRTYWGRS,CNhs12593,BestGuess:RFX1_f1_HM09(0.656185092251034),T:1285.0(42.56%),B:13939.4(30.84%),P:1e-41
|name=5-SBGTYRTYWGRS,CNhs12593,BestGuess:RFX1_f1_HM09(0.656185092251034),T:1285.0(42.56%),B:13939.4(30.84%),P:1e-41
|tomtom_result=ABF1#MA0265.1;0;0.00025563;0.12168;0.24231;12;GGGTTATTAGGG;ATATCACTTTATACGA;-!BRCA1#MA0133.1;0;0.000557638;0.265436;0.24231;7;GGGTTATTAGGG;GTGTTGT;-!RFX1#MA0365.1;-1;0.000763774;0.363557;0.24231;8;GGGTTATTAGGG;GGTTGCTA;+!Gamyb#MA0034.1;2;0.00191712;0.912547;0.395766;8;GGGTTATTAGGG;GGCGGTTGTC;-!Gata1#MA0035.2;0;0.00207913;0.989665;0.395766;11;GGGTTATTAGGG;TTCTTATCTGT;-!Pax4#MA0068.1;3;0.00673212;3.20449;0.999747;12;GGGTTATTAGGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!ESR1#MA0112.2;6;0.0088172;4.19699;0.999747;12;GGGTTATTAGGG;AGGTCAGGGTGACCTGGGCC;-!GSM1#MA0308.1;9;0.0131374;6.25339;0.999747;12;GGGTTATTAGGG;TATACTCCGGAGTTTTTTAAT;-!CREB1#MA0018.1;1;0.0137987;6.56818;0.999747;11;GGGTTATTAGGG;GACGTCACCAGG;-!myb.Ph3#MA0054.1;3;0.0165121;7.85977;0.999747;6;GGGTTATTAGGG;TAACCGTTT;+!caup#MA0217.1;-1;0.0203669;9.69463;0.999747;5;GGGTTATTAGGG;TGTTA;-
}}
}}

Latest revision as of 14:45, 7 September 2012

Full Name: 5-SBGTYRTYWGRS,CNhs12593,BestGuess:RFX1_f1_HM09(0.656185092251034),T:1285.0(42.56%),B:13939.4(30.84%),P:1e-41

Motif matrix
POACGT
1182.47444.61457.46200.46
21.285381.645457.46444.61
31.2851.285989.45292.98
4313.541.2851.285968.89
51.285553.8351.285728.595
6567.971.285426.62289.125
71.285531.991.285750.44
81.285576.9652.57704.18
9588.5380.955115.65498.58
10257.0322.535516.57188.895
11402.205179.9451.035250.575
1295.09456.175602.665132.355

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ABF1#MA0265.100.000255630.121680.2423112GGGTTATTAGGGATATCACTTTATACGA-
BRCA1#MA0133.100.0005576380.2654360.242317GGGTTATTAGGGGTGTTGT-
RFX1#MA0365.1-10.0007637740.3635570.242318GGGTTATTAGGGGGTTGCTA+
Gamyb#MA0034.120.001917120.9125470.3957668GGGTTATTAGGGGGCGGTTGTC-
Gata1#MA0035.200.002079130.9896650.39576611GGGTTATTAGGGTTCTTATCTGT-
Pax4#MA0068.130.006732123.204490.99974712GGGTTATTAGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
ESR1#MA0112.260.00881724.196990.99974712GGGTTATTAGGGAGGTCAGGGTGACCTGGGCC-
GSM1#MA0308.190.01313746.253390.99974712GGGTTATTAGGGTATACTCCGGAGTTTTTTAAT-
CREB1#MA0018.110.01379876.568180.99974711GGGTTATTAGGGGACGTCACCAGG-
myb.Ph3#MA0054.130.01651217.859770.9997476GGGTTATTAGGGTAACCGTTT+
caup#MA0217.1-10.02036699.694630.9997475GGGTTATTAGGGTGTTA-
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