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MacroAPE 1083:12-GTAGCWCSGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;98.88;123.84;514.56;222.72!2;0.96;0.96;0.96;957.12!3;562.56;0.96;0.96;395.52!4;270.72;144.96;467.52;76.8!5;131.52;710.4;0.96;117.12!6;249.6;...")
 
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107G3;0.236377!10429-106D6;0.219079!10464-106H5;0.247191!10827-111C8;0.17819!10789-110H6;0.955567!10828-111C9;0.519316!10788-110H5;0.571089!10792-110H9;0.396541!10765-110E9;0.493051!10829-111D1;0.82362!10830-111D2;0.517448!10831-111D3;0.286513!10832-111D4;0.898728!10833-111D5;0.50395!10764-110E8;0.353384!10770-110F5;0.623078!10399-106A3;0.418944!10400-106A4;0.691879!10405-106A9;0.823754!10834-111D6;0.486498!10835-111D7;0.802142!10836-111D8;0.28008!10837-111D9;0.352516!10699-109G6;0.804842!10802-111A1;0.750293!10796-110I4;0.998904!10010-101C1;0.0698452!10810-111A9;0.41566!10421-106C7;0.228263!10708-109H6;0.098269!12235-129G3;0.351493!12236-129G4;0.98271!12237-129G5;0.908851!10167-103B5;0.483429!10151-102I7;0.747712!10428-106D5;0.663776!10795-110I3;0.208384!10805-111A4;0.419823!10052-101G7;0.297897!10189-103D9;0.651018!10589-108D4;0.28751!10425-106D2;0.629368!10427-106D4;0.168587!10702-109G9;0.0617935!10432-106D9;0.2613!10496-107C1;0.107015!10718-109I7;0.252448!10011-101C2;0.925201!10053-101G8;0.253738!10686-109F2;0.23539!10084-102B3;0.553756!10012-101C3;0.350286!10085-102B4;0.427862!10482-107A5;0.281919!10419-106C5;0.00141012!10080-102A8;0.0629054!10760-110E4;0.239534!10709-109H7;0.53224!10710-109H8;0.134403!10703-109H1;0.080216!10719-109I8;0.842497!10642-109A3;0.331936!10177-103C6;0.884116!10164-103B2;0.70898!10173-103C2;0.632199!10166-103B4;0.994897!10083-102B2;0.842837!10188-103D8;0.626315!10552-107I3;0.426817!10553-107I4;0.0546153!10013-101C4;0.0208927!10536-107G5;0.303638!10618-108G6;0.787805!10423-106C9;0.314981!10785-110H2;0.0353537!12238-129G6;0.157267!12239-129G7;0.257895!12240-129G8;0.195757!10416-106C2;0.318964!10801-110I9;0.746389!10766-110F1;0.885802!10824-111C5;0.872841!10825-111C6;0.0670388!10826-111C7;0.084639!10454-106G4;0.10177!10409-106B4;0.231324!10638-108I8;0.531166!10636-108I6;0.0265573!10513-107D9;0.153238!10420-106C6;0.148793!10082-102B1;0.119568!10014-101C5;0.26698!10070-101I7;0.0794228!10452-106G2;0.274402!10453-106G3;0.0738269!10449-106F8;0.11209!10042-101F6;0.103269!10069-101I6;0.518235!10193-103E4;0.122017!10631-108I1;0.512118!10438-106E6;0.248556!10488-107B2;0.0439444!10196-103E7;0.213202!10071-101I8;0.33459!10071-101I8;0.310704!10041-101F5;0.472338!10451-106G1;0.0983092!10450-106F9;0.629683!10604-108F1;0.643908!10605-108F2;0.0385542!10606-108F3;0.0214951!10603-108E9;0.025254!10497-107C2;0.0263774!10448-106F7;0.30671!10643-109A4;0.102375!10426-106D3;0.0569923!10431-106D8;0.0905582!10197-103E8;0.0351285!10443-106F2;0.461436!10815-111B5;0.0541443!10816-111B6;0.187946!10817-111B7;0.155479!10015-101C6;0.236244!10410-106B5;0.232767!10054-101G9;0.322372!10758-110E2;0.201621!10711-109H9;0.226026!10040-101F4;0.125848!10470-106I2;0.526895!10415-106C1;0.157907!10198-103E9;0.0362308!10614-108G2;0.219521!10612-108F9;0.279683!10549-107H9;0.0576423!10615-108G3;0.0706537!10487-107B1;0.874023!10433-106E1;0.176655!10688-109F4;0.0545435!10444-106F3;0.163738!10444-106F3;0.468314!10485-107A8;0.530678!10413-106B8;0.0661173!10175-103C4;0.450673!10161-103A8;0.557262!12131-128D7;0.495835!10624-108H3;0.488407!10712-109I1;0.708011!10205-103F7;0.345638!10206-103F8;0.353914!10207-103F9;0.580785!10050-101G5;0.163025!10051-101G6;0.609453!10016-101C7;0.737731!10046-101G1;0.516602!10778-110G4;0.715119!10633-108I3;0.0960172!10818-111B8;0.104382!10819-111B9;0.296454!10820-111C1;0.368688!10484-107A7;0.27763!10808-111A7;0.0275608!10169-103B7;0.362293!10153-102I9;0.840282!13425-144D5;0.648201!13433-144E4;0.469732!13437-144E8;0.824514!11904-125F5;0.806851!11905-125F6;0.62236!10039-101F3;0.363054!10791-110H8;0.52705!10017-101C8;0.289102!10045-101F9;0.773974!10509-107D5;0.417597!10839-111E2;0.381244!10692-109F8;0.0453633!10079-102A7;0.000221894!10078-102A6;0.241594!10721-110A1;0.390162!10569-108B2;0.348913!10570-108B3;0.121777!10571-108B4;0.0713593!10647-109A8;0.0465546!10752-110D5;0.0990336!10782-110G8;0.699239!10726-110A6;0.549025!10018-101C9;0.155326!10086-102B5;0.400758!10182-103D2;0.287069!10165-103B3;0.732846!10499-107C4;0.562996!10408-106B3;0.0861953!10019-101D1;0.0855554!10068-101I5;0.791627!10075-102A3;0.650405!10077-102A5;0.722621!10727-110A7;0.0937973!10775-110G1;0.192726!10412-106B7;0.337955!12231-129F8;0.0651498!12232-129F9;0.811234!12233-129G1;0.941523!12234-129G2;0.78132!10414-106B9;0.398603!10170-103B8;0.00596405!10183-103D3;0.773507!10150-102I6;0.663536!10174-103C3;0.629648!10155-103A2;0.864565!10038-101F2;0.638827!10838-111E1;0.433982!10759-110E3;0.766971!10514-107E1;0.360904!10465-106H6;0.410355!10691-109F7;0.68939!10843-111E6;0.859092!10844-111E7;0.854202!11747-123G1;0.764846!11748-123G2;0.00502181!11749-123G3;0.0143196!11750-123G4;0.139112!11751-123G5;0.51749!11840-124H4;0.270749!11752-123G6;0.118448!11753-123G7;0.685248!11754-123G8;0.138935!11755-123G9;0.00341721!11756-123H1;0.0149038!11833-124G6;0.0375669!11760-123H5;0.53409!11836-124G9;0.000893014!11758-123H3;0.0204636!11835-124G8;0.00359307!11762-123H7;0.0801347!11838-124H2;0.0263787!11757-123H2;0.0782721!11759-123H4;0.437611!11761-123H6;0.020155!11842-124H6;0.177545!11837-124H1;0.175259!10568-108B1;0.0327939!13230-141I8;0.282064!13231-141I9;0.0283371!10696-109G3;0.0185761!10493-107B7;0.381079!10494-107B8;0.0348006!10850-111F4;0.434701!10851-111F5;0.0478739!10852-111F6;0.388258!10853-111F7;0.655928!10854-111F8;0.0635654!10855-111F9;0.0681558!10856-111G1;0.540465!10847-111F1;0.31725!10846-111E9;0.161486!10848-111F2;0.622042!10845-111E8;0.483853!10857-111G2;0.0221704!10858-111G3;0.032559!10156-103A3;0.0907284!11901-125F2;0.572035!11902-125F3;0.63717!11903-125F4;0.899306!10689-109F5;0.759827!10648-109A9;0.0886882!10784-110H1;0.218391!10744-110C6;0.100534!10772-110F7;0.462776!10474-106I6;0.251166!10600-108E6;0.493698!10684-109E9;0.107303!12226-129F3;0.585275!12227-129F4;0.169495!10508-107D4;0.635973!10539-107G8;0.953978!10607-108F4;0.938314!10555-107I6;0.765745!10774-110F9;0.602989!10637-108I7;0.232025!10663-109C6;0.299619!10728-110A8;0.25718!10729-110A9;0.279235!10430-106D7;0.135027!10730-110B1;0.0887798!10813-111B3;0.827913!10812-111B2;0.382187!10037-101F1;0.266484!10172-103C1;0.521883!10163-103B1;0.796103!10076-102A4;0.61125!10073-102A1;0.460558!10036-101E9;0.511165!10195-103E6;0.409069!10277-104E7;0.641386!10434-106E2;0.583099!10550-107I1;0.0200209!10545-107H5;0.00691074!10544-107H4;0.175254!10704-109H2;0.131636!10510-107D6;0.867285!10558-107I9;0.235277!10020-101D2;0.518657!10732-110B3;0.431547!10049-101G4;0.924744!10698-109G5;0.521974!10437-106E5;0.110407!10417-106C3;0.0322828!10035-101E8;0.0771809!10171-103B9;0.546587!10157-103A4;0.756785!10034-101E7;0.636308!10072-101I9;0.456135!10199-103F1;0.767254!10200-103F2;0.216486!10697-109G4;0.312556!10723-110A3;0.317521!10179-103C8;0.235515!10160-103A7;0.396394!10180-103C9;0.818467!10162-103A9;0.798518!10021-101D3;0.73182!10840-111E3;0.209685!10706-109H4;0.0897015!10033-101E6;0.158176!10032-101E5;0.539696!10490-107B4;0.440058!10439-106E7;0.00589993!10022-101D4;0.0369393!10176-103C5;0.267027!10469-106I1;0.66755!10067-101I4;0.150735!10411-106B6;0.117214!10471-106I3;0.243403!10030-101E3;0.349333!10475-106I7;0.373537!10787-110H4;0.252286!10477-106I9;0.30078!10695-109G2;0.639039!11771-123I7;0.390161!11772-123I8;0.360854!11773-123I9;0.936156!10093-102C3;0.842922!10442-106F1;0.630705!10442-106F1;0.0845851!10201-103F3;0.10067!10639-108I9;0.189049!11843-124H7;0.127296!11841-124H5;0.420808!10693-109F9;0.255843!10436-106E4;0.33409!10483-107A6;0.243773!10282-104F3;0.303693!10023-101D5;0.419276!10066-101I3;0.233435!10065-101I2;0.162783!10800-110I8;0.301196!10610-108F7;0.970844!10841-111E4;0.784105!10541-107H1;0.522549!10842-111E5;0.161365!10562-108A4;0.871418!10024-101D6;0.613705!10064-101I1;0.262156!10609-108F6;0.203942!10048-101G3;0.54243!10781-110G7;0.447436!10181-103D1;0.663154!10159-103A6;0.50864!10056-101H2;0.707853!10737-110B8;0.277708!10025-101D7;0.15895!10044-101F8;0.205846!10424-106D1;0.289022!10463-106H4;0.0350293!10616-108G4;0.034477!10486-107A9;0.102284!10062-101H8;0.0550085!10202-103F4;0.171556!10158-103A5;0.297098!10441-106E9;0.478269!10031-101E4;0.737102!10063-101H9;0.376647!10063-101H9;0.542456!11763-123H8;0.251748!11765-123I1;0.0190626!11768-123I4;0.270244!10807-111A6;0.0545938!10790-110H7;0.65737!10798-110I6;0.218758!10786-110H3;0.930545!10591-108D6;0.32146!10593-108D8;0.179279!10590-108D5;0.0696861!10026-101D8;0.0419535!10096-102C6;0.949598!10168-103B6;0.0768419!10154-103A1;0.649219!10209-103G2;0.555485!10061-101H7;0.340318!10027-101D9;0.563735!10043-101F7;0.554345!10783-110G9;0.821434!10028-101E1;0.231172!10060-101H6;0.769834!10203-103F5;0.766825!10059-101H5;0.335933!10047-101G2;0.180102!10029-101E2;0.481195!10058-101H4;0.501036!10418-106C4;0.191098!10492-107B6;0.139672!10694-109G1;0.00537824!10797-110I5;0.219612!10057-101H3;0.295502!10100-102D1;0.245739!10055-101H1;0.55748!10204-103F6;0.249491!10191-103E2;0.457568!10563-108A5;0.148462
|name=12-GTAGCWCSGC,CNhs13238,BestGuess:RFX2_f1_HM09(0.622836631783224),T:960.0(37.01%),B:11807.9(26.86%),P:1e-29
|name=12-GTAGCWCSGC,CNhs13238,BestGuess:RFX2_f1_HM09(0.622836631783224),T:960.0(37.01%),B:11807.9(26.86%),P:1e-29
|tomtom_result=STB5#MA0392.1;-1;0.000693131;0.32993;0.65986;8;GTAGCTCCGC;TAACACCG;-!YRR1#MA0439.1;1;0.0142976;6.80565;1;10;GTAGCTCCGC;CTTATCTCCGC;+!YDR520C#MA0422.1;0;0.0151912;7.23101;1;10;GTAGCTCCGC;TTATCTCCGG;-!RFX1#MA0365.1;1;0.0178248;8.4846;1;7;GTAGCTCCGC;GGTTGCTA;+!SUT1#MA0399.1;-4;0.0195887;9.32423;1;6;GTAGCTCCGC;CCCCGCG;-!CHA4#MA0283.1;-3;0.0207128;9.85928;1;7;GTAGCTCCGC;TCTCCGCC;-!SNT2#MA0384.1;2;0.020886;9.94174;1;9;GTAGCTCCGC;TGGTAGCGCCG;+
}}
}}

Latest revision as of 14:47, 7 September 2012

Full Name: 12-GTAGCWCSGC,CNhs13238,BestGuess:RFX2_f1_HM09(0.622836631783224),T:960.0(37.01%),B:11807.9(26.86%),P:1e-29

Motif matrix
POACGT
198.88123.84514.56222.72
20.960.960.96957.12
3562.560.960.96395.52
4270.72144.96467.5276.8
5131.52710.40.96117.12
6249.6197.76155.52358.08
7334.08509.760.96115.2
837.44478.08410.8833.6
9281.28216.96460.80.96
100.96957.120.960.96

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STB5#MA0392.1-10.0006931310.329930.659868GTAGCTCCGCTAACACCG-
YRR1#MA0439.110.01429766.80565110GTAGCTCCGCCTTATCTCCGC+
YDR520C#MA0422.100.01519127.23101110GTAGCTCCGCTTATCTCCGG-
RFX1#MA0365.110.01782488.484617GTAGCTCCGCGGTTGCTA+
SUT1#MA0399.1-40.01958879.3242316GTAGCTCCGCCCCCGCG-
CHA4#MA0283.1-30.02071289.8592817GTAGCTCCGCTCTCCGCC-
SNT2#MA0384.120.0208869.9417419GTAGCTCCGCTGGTAGCGCCG+
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