Personal tools

MCL coexpression mm9:274: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0042667;auditory receptor cell fate specification;0.0237659562811593;11921!GO:0045633;positive regulation of mechanorecept...")
 
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0042667;auditory receptor cell fate specification;0.0237659562811593;11921!GO:0045633;positive regulation of mechanoreceptor differentiation;0.0237659562811593;11921!GO:0045606;positive regulation of epidermal cell differentiation;0.0237659562811593;11921!GO:0045609;positive regulation of auditory receptor cell differentiation;0.0237659562811593;11921!GO:0045684;positive regulation of epidermis development;0.0237659562811593;11921!GO:0042668;auditory receptor cell fate determination;0.0445416390019618;11921!GO:0045607;regulation of auditory receptor cell differentiation;0.0445416390019618;11921!GO:0045631;regulation of mechanoreceptor differentiation;0.0445416390019618;11921!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0352985964618718,0.404469891139416,0.422160881236897,0.382943396832207,0.341295263313045,1.23278727541829,1.26032404633097,-0.015160260389313,-0.00337448567661118,-0.0113594985703369,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0157050570998664,0.00188367810462775,0.00274556998889915,-0.00924040696477042,0.0154810281361919,0.0263533782378285,0.0282786023859295,0.118416850960658,-0.0155478845657057,-0.0169183063355337,0.943458908709369,0.97317204503122,0.599730897800644,0.885355229966913,0.889794196257621,1.38943040481447,1.11225015045819,1.11488325035089,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,0.30482831746343,0.439417930490244,0.31502877936581,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0110140183126104,-0.0128478818019207,-0.00786509168363823,-0.0169183063355337,-0.00677792037153493,-0.0169183063355337,-0.00858953100911634,-0.013344947819966,-0.0169183063355337,0.0315510025721978,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,0.0236602665503862,0.0444371518066607,0.0509609731193469,0.0532309175931987,-0.0126939680274788,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,0.00359448005287752,-0.00990548753813097,-0.00853531922669294,-0.00862810732255653,0.0326566044221771,0.045178342722732,0.0231715853566914,0.0212730766963141,0.0166906076690771,0.0418354081981882,0.0255601073209406,0.0275176908315972,0.0209621478081705,0.0217672538980937,0.0297993608805798,0.0326657974710048,0.0377875647803531,0.0358496615459444,0.0318976907690778,0.0329249176971874,0.0120498846434729,-0.00145633136027004,0.0236813882902461,0.070628997178973,-0.00793124284616792,-0.0018981815902681,-0.0106704060015328,-0.00967080329099167,-0.0169183063355337,0.342343335305792,-0.0169183063355337,-0.0169183063355337,-0.0125380802791377,0.0206519108780014,-0.0169183063355337,-0.0169183063355337,-0.0169183063355337,-0.011710281001457,-0.0169183063355337,-0.00680421871110114,0.521950803402227,0.0566787104533555,-0.0169183063355337,0.00891425871467909,0.011853978646699,0.00019184098304366,0.0142156365089955,0.00920697541454369,0.0236459224568654,-0.0105226830112728,0.0290961776875995,0.010603855505197,0.0356772497769961,-0.000371400868051633,0.0141551063412336,0.944325331768212,-0.00407498458975274,-0.00029058488961049,0.909734052939215,-0.00177033091246607,-0.00550549713420704,0.00567731701069362,0.0288489986349437,0.0259336220511254,0.014129036807464,0.0159609694565323,0.0192619883353221,0.0324724770122048,0.0386320914252821,0.0140755011078594,0.0252669045555294,0.0436186298874773,-0.00153922496356766,-0.0096635588848875,0.0122826237773825,0.0298171198754898,0.0342042852584393,0.0118179407118173,0.0145193137726493,0.00573802788788942,0.00273336070044416,-0.0169183063355337,-2.16841107853234e-05,-0.0125534633250746,-0.000467182178541313,-0.00271057400570755,0.014091785365087,0.012730707314939,0.0340326199699206,-0.000508610717873705,-8.53897495720903e-05,-0.00411957134729964,0.0387958916123088,0.0496744133973753,0.0525808142137691,0.0530611780524115,0.0519870840332981,0.0526781148721194,0.0426682930306056,0.0510484810814807,0.0453683743170116,0.0413673765798427,0.0424525063552458,0.0270866652130802,0.0151918520664954,0.0270738909534341,0.0175049715138225,0.0152100125984476,0.0614748731570262,0.887248924109913,0.763814419611844,0.000201028791184457,-0.00136135688346635,0.279434228422523,0.449485310601916,0.560515608579323,0.672966778724964,0.857242797055609,0.718809922488784,0.659657236607584,0.676096842039089,0.669627961304556,0.819544801368835,1.09383148465135,1.07878802601849,0.0121510598816545,0.0300199046980498,0.0513387437657133,0.0710210625331512,0.0646431233867419,0.0581158636984349,0.0504616042333391,0.066961389400612,0.0586505097142277,0.0818047228780997,0.0371841439265573,-0.00728337610394578,-0.0143205024714991,-0.0169183063355337,-0.00664066791474262,-0.00440713632730783,0.02236064079926,0.00598999240552458,-0.00158829481023065,0.0149281022692414,-0.00401907093185413,0.0241195667609266,0.0191739441642251,0.0328649045025127,0.0430815811387886,-0.0112190344537723,0.0707216322681916,0.0175661093082651,0.00460727728630805,0.0236664930699366,-0.00733416389009057,-0.000126853602502228,0.0134892728008743,0.0350686810748719,0.0381940051859694,0.0492861939671289,0.128752467299144,0.0998786050017118,0.155335804945776,0.10401227751879,-0.0169183063355337,-0.0106309474673264,-0.00121368444100039,-0.00280775366011904,0.0351368998661254,0.0292136058925908,-0.0169183063355337,0.00693824240882725,-0.0129485208041325,-0.0169183063355337,-0.0140940532502678,-0.013816294025814,-0.0140064743643451,-0.0169183063355337,-0.0119977127696504,-0.0169183063355337,-0.0169183063355337,0.0219031694272616,0.0973919532255848,0.0173578650482092,0.019418938717866,0.0701128791152299,0.0980458131567166,0.0745304687940671,0.0996415537694381,0.118639060551014,0.115799542987138,0.125610321973841,0.351339853477063,0.162679829695747,0.162830994961367,0.0813415155313266,0.10302503123057,0.0628193173472135,0.158220024324357,-0.0124657088207991,-0.00497323514280719,-0.0117538675852584,0.0904218529713224,0.0913877086266648,0.0703204082983536,0.0352928706230143,0.00448500224970423,0.00165310761066191,0.0199443313041982,0.00614882523085879,0.0365359387098015,0.00530734146364782,0.0172793433295546,0.0921641307505856,0.863104128775177,0.0380943338425026,0.017703335412119,0.0161500053757452,0.01887352322246,0.0199369405725399,0.00867898465584419,0.0137935331087109,-0.00165677330085598,0.000708715117886363,0.00350349620294098,0.332694631014241,0.00187296763777532,0.0778892917886256,0.187812734009756,0.14312206139184,0.230195709891836,0.124391146373337,0.14829235036346,0.234142828334772,0.912951224705838,0.187039531000699,0.000165711613972517,0.0549328361419276,0.0578573526295263,0.0358029970078667,0.0355462181465957,0.0306348278641895,0.0244850421994758,-0.00147045072859532,0.00690633878680616,-0.00181434412695064,-0.000574344929494233,0.0078688502590067,0.0233012993244076,0.00873047017512864,0.0212855533348129,0.0188825717758544,0.038022817641676,0.0235831310937324,0.0154043689841473,0.0457634713722507,0.0233757394750205,0.0395741798987765,0.0521187706491138,0.0337076997671995,0.0353399442395353,0.0578231045439636,-0.0169183063355337,-0.0145292620603682,-0.0146716417404673,0.0214733562715991,0.0475827963584404,0.215025573045519,0.0794792000760983,-0.000976359432639137,0.00624473963496586,0.00368058787900981,0.000328516524940797,-0.00210147634276768,-0.0044256867390429,-0.0169183063355337,-0.00945095149552514,-0.00454344277630982,0.000918852473265276,-0.0108781999296345,0.0134944791973808,0.0246858874572365,0.00704568631660496,0.0663790949281228,0.0177619455662891,0.0752282911995026,0.160239791522246,0.140127601382045,0.139087144635782,0.130097459087712,0.143698442843338,0.140548779140212,0.131903900329853,0.133553848672749,0.129779159934707,0.130216493864941,0.117514796005154,0.144859470205874,0.122624122321497,0.130221051619067,0.137400109149334,0.144853840780015,0.141908443023062,0.137505532140131,0.139151562615261,0.140781322594117,0.121368146741446,0.139766221197219,0.13124373744659,0.121301753469034,0.122915515658834,0.12144331682919,0.137691781352775,0.126424264849006,0.159759894470638,0.0553207719373547,0.25173112579751,0.247533473116663,0.133289811954225,0.116179325467111,0.115037781279046
|gostat_on_MCL_coexpression=GO:0042667;auditory receptor cell fate specification;0.0237659562811593;11921!GO:0045633;positive regulation of mechanoreceptor differentiation;0.0237659562811593;11921!GO:0045606;positive regulation of epidermal cell differentiation;0.0237659562811593;11921!GO:0045609;positive regulation of auditory receptor cell differentiation;0.0237659562811593;11921!GO:0045684;positive regulation of epidermis development;0.0237659562811593;11921!GO:0042668;auditory receptor cell fate determination;0.0445416390019618;11921!GO:0045607;regulation of auditory receptor cell differentiation;0.0445416390019618;11921!GO:0045631;regulation of mechanoreceptor differentiation;0.0445416390019618;11921!
}}

Revision as of 11:06, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:101953059..101953074,-p1@Nts
Mm9::chr11:75381481..75381495,+p@chr11:75381481..75381495
+
Mm9::chr15:58341592..58341608,+p1@Fer1l6
Mm9::chr15:75759076..75759118,-p@chr15:75759076..75759118
-
Mm9::chr15:99058963..99058972,+p@chr15:99058963..99058972
+
Mm9::chr16:33518275..33518293,+p1@Slc12a8
Mm9::chr16:33518389..33518426,+p2@Slc12a8
Mm9::chr17:25507495..25507511,+p5@Tpsg1
Mm9::chr17:25507520..25507544,+p2@Tpsg1
Mm9::chr17:29430984..29431005,+p@chr17:29430984..29431005
+
Mm9::chr3:144672785..144672802,-p@chr3:144672785..144672802
-
Mm9::chr3:144672850..144672861,-p@chr3:144672850..144672861
-
Mm9::chr3:144681646..144681660,-p@chr3:144681646..144681660
-
Mm9::chr3:144687544..144687560,-p@chr3:144687544..144687560
-
Mm9::chr3:144690317..144690343,+p@chr3:144690317..144690343
+
Mm9::chr3:144695729..144695745,-p1@Clca3
Mm9::chr3:144695833..144695862,-p3@Clca3
Mm9::chr3:144695921..144695933,-p2@Clca3
Mm9::chr4:40867080..40867096,+p1@Spink4
Mm9::chr4:40878323..40878351,-p@chr4:40878323..40878351
-
Mm9::chr6:3444486..3444526,-p1@Hepacam2
Mm9::chr6:3444527..3444542,-p2@Hepacam2
Mm9::chr6:3444549..3444563,-p4@Hepacam2
Mm9::chr6:3444587..3444598,-p3@Hepacam2
Mm9::chr6:64679112..64679126,+p1@Atoh1
Mm9::chr7:148876232..148876247,+p1@Muc2
Mm9::chr7:148878517..148878527,+p@chr7:148878517..148878527
+
Mm9::chr7:148880479..148880493,+p@chr7:148880479..148880493
+
Mm9::chr7:28886314..28886326,+p4@Fcgbp
Mm9::chr8:12931718..12931750,+p@chr8:12931718..12931750
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042667auditory receptor cell fate specification0.0237659562811593
GO:0045633positive regulation of mechanoreceptor differentiation0.0237659562811593
GO:0045606positive regulation of epidermal cell differentiation0.0237659562811593
GO:0045609positive regulation of auditory receptor cell differentiation0.0237659562811593
GO:0045684positive regulation of epidermis development0.0237659562811593
GO:0042668auditory receptor cell fate determination0.0445416390019618
GO:0045607regulation of auditory receptor cell differentiation0.0445416390019618
GO:0045631regulation of mechanoreceptor differentiation0.0445416390019618



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:274&oldid=2145788"