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MCL coexpression mm9:95: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_mean=0.017173324386895,0.0146774617390811,0.0111680963912252,-0.00156851320712468,0.0017779584417372,-0.00617516668654334,-0.00962845385982997,-0.00388503722117489,-0.00557166543218158,-0.00435771785021843,-0.0108855249823801,-0.0125261687144536,-0.00659585361751931,-0.00673405162508966,-0.00496213686435643,0.00363812043588472,0.000500264194574273,0.0017073648944854,0.00180552718523058,-0.000844475638064053,0.0438132741114983,0.00292886877719284,0.00239962258280194,0.000401883124230038,-0.00736286532056788,-9.78447172819462e-05,-0.000700377574341901,0.000544738027818643,-0.00688327805674557,-0.00389681367896077,-0.00503771897916418,-0.0039102121165024,-0.00979967536628572,-0.0199616636621025,-0.0104952354294733,-0.0134949042283069,-0.0052265239291909,0.00452473919545286,-0.00111486785938824,0.00147987071936609,0.00123983552654942,0.0040167473246751,0.0033922836684507,0.00930535541710004,0.00638741086881793,-0.000323354990526383,-0.00395904453495335,-0.000401849214426019,0.00733828858781377,0.0122017251160859,0.001481224865432,-0.0030075204386103,-0.00759480096163775,-0.00519227081315123,-0.00273663545029223,-0.00523456150677858,0.0467329572089195,0.0752033702006425,-0.00197372834293931,0.00779094750979227,-0.00167102562580378,-0.009385184786485,-0.013386487297044,-0.0143113701064404,-0.0155378769560717,-0.0130544627822917,0.00199702670653444,0.0117089484225495,-0.0100340291759964,-0.0062633656893306,-0.00554139795752088,0.0228661104287859,0.0201155998510607,-0.00775315525058991,-0.00888223081577978,-0.0102273379731145,0.00732103887196415,0.0226950297610944,0.0199755627881564,-0.00216612247245945,0.00708999564252749,-0.00173162411260669,0.0167209056378756,0.0146911788667656,0.0265141865593567,0.0197704778502489,0.0189802473114722,0.00210447687712074,-0.00635450752732755,-0.00749162256578556,0.0515218241787919,-0.00250289045123672,-0.00108098453320114,-0.00360013395867555,-0.0135194387336207,-0.00894116689767829,0.0845284731241856,0.00130029319509795,-0.00528522551070076,-0.00827631598850372,0.0345006383168281,-0.000322010455231031,-0.00159894068923409,-0.0078126004021009,0.0398055905471352,0.0381362370501042,0.0368864197807044,0.0544584081128216,0.0120488006834534,0.0148033174992272,0.00673132967295841,0.00855489459487981,0.0171890851988609,0.0143619237764994,0.0257438549840719,0.0202813805912155,0.064230734568752,0.10020013364391,0.0295837618221944,0.031463230694062,0.0430991862270194,0.0273255102132833,0.0723133007730817,0.0201602104288639,0.0144390862516108,0.0707876414291966,0.00735188496052749,0.000664187053842915,0.00573486410587818,0.0291863178387089,0.013657235017329,-0.000262441809131855,0.0227367759473469,0.0166699503172424,0.0300912608442867,0.0221757841985799,0.0544168321802033,0.113380326892816,0.121784305573149,0.128898478215205,0.00603425155538365,0.0174228284160869,0.0266431769830562,0.0407393414512106,0.0434559602794261,0.0452517906958419,0.0337698825737731,0.100307248658195,0.0119951497498724,0.0139301208635585,0.0279876855022105,0.0299086868568593,0.076666522407633,0.0583714110867071,0.049293272845816,0.0217504578104553,-0.00763761313675657,-0.00306577732645262,-6.06236360572053e-05,0.0563847222383146,0.0571277632038652,0.0518596073593721,0.0488070365305166,0.0444365647683976,0.074100337827279,0.0662293433444683,0.080407846503271,0.0730542694006931,0.0700179247375106,0.0686776052480381,0.0716726108574472,0.079321400926249,0.0867593353349181,0.0827594915105524,0.0266821591079434,0.00611331201126322,0.00161035343361869,0.0425051901560291,0.0332937272757668,0.0480985532901001,0.0535263184397711,0.0365434748771268,0.0412499289852856,0.046204795930252,0.0862164420508362,0.0591531622346966,0.0793373090271666,0.0958086345669464,0.0942906387983906,0.0862743566326689,0.0969552176530991,0.0965782679129283,0.007645945260645,0.0266268438147707,0.0450234211413058,0.07936580258114,0.0860715431275865,0.0858461135786524,0.0738605546219339,0.0821955567837472,0.0772207654721863,0.0658872466784647,-0.00153917609833603,0.0175242136949794,0.00791810679369386,0.00275783119459845,0.00834974902641878,0.0084913987388957,0.0143999502439853,0.0204870484559905,0.0124326293746633,0.0142303185860104,0.0334404162236879,0.0136460014319963,0.0272783797867301,0.00423217853482741,0.00334550466744579,-0.00219454598116842,0.090632688805811,0.02784252077484,0.0270263701748992,0.0338019116413168,0.0493461207649544,0.0573111599470503,0.083157797106195,0.0760282354930177,0.0851588335387852,0.0861766361993252,0.0751996950883307,0.0969300553352865,0.0962184072263537,0.0916327416570114,-0.00329901877613294,-0.000828298391992312,0.0536948071526794,0.0682162176727265,0.0267643967730041,0.0201981968939592,-0.00974778386403509,0.047111574864135,-0.00105754964375912,0.00197511513683247,0.0106905543623924,-0.00194887784155547,0.00205752092354033,0.000515980675753235,-0.00317174865274396,0.0128445598386625,0.0079318654904406,0.0111531677163042,0.101999081833665,0.0428546140590831,0.0728449612826969,0.146748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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0509235292940968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0294389011296462,0.0266298923127834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0865478886078475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0445418537893845,0,0,0.103710933695783,0.0962007932069227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13217396274472,0,0,0.0843504501108034,0.176546191435317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0388749848471105,0.0523284672130554,0.0242538736058389,0,0.0476191773904887,0,0,0,0,0,0,0,0.0390607415003592,0.0352754493378881,0,0,0.0553034373508932,0,0.0486884105045233,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0030018;Z disc;0.00173554666552864;226041,118449,13346!GO:0031674;I band;0.00173554666552864;226041,118449,13346!GO:0001601;peptide YY receptor activity;0.00173554666552864;18169,19065!GO:0030017;sarcomere;0.00539675085493983;226041,118449,13346!GO:0044449;contractile fiber part;0.00539675085493983;226041,118449,13346!GO:0030016;myofibril;0.00539675085493983;226041,118449,13346!GO:0007618;mating;0.00539675085493983;11804,18436!GO:0043292;contractile fiber;0.00539675085493983;226041,118449,13346!GO:0004983;neuropeptide Y receptor activity;0.00688109482655169;18169,19065!GO:0042923;neuropeptide binding;0.0341291961064185;18169,19065!GO:0008188;neuropeptide receptor activity;0.0341291961064185;18169,19065!GO:0032753;positive regulation of interleukin-4 production;0.0345148742672437;14462!
|gostat_on_MCL_coexpression=GO:0030018;Z disc;0.00173554666552864;226041,118449,13346!GO:0031674;I band;0.00173554666552864;226041,118449,13346!GO:0001601;peptide YY receptor activity;0.00173554666552864;18169,19065!GO:0030017;sarcomere;0.00539675085493983;226041,118449,13346!GO:0044449;contractile fiber part;0.00539675085493983;226041,118449,13346!GO:0030016;myofibril;0.00539675085493983;226041,118449,13346!GO:0007618;mating;0.00539675085493983;11804,18436!GO:0043292;contractile fiber;0.00539675085493983;226041,118449,13346!GO:0004983;neuropeptide Y receptor activity;0.00688109482655169;18169,19065!GO:0042923;neuropeptide binding;0.0341291961064185;18169,19065!GO:0008188;neuropeptide receptor activity;0.0341291961064185;18169,19065!GO:0032753;positive regulation of interleukin-4 production;0.0345148742672437;14462!
}}
}}

Revision as of 12:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:107599414..107599464,+p2@Ppp1r12a
Mm9::chr10:116368907..116368923,-p@chr10:116368907..116368923
-
Mm9::chr10:128361004..128361013,-p4@Bloc1s1
Mm9::chr10:14266093..14266104,-p@chr10:14266093..14266104
-
Mm9::chr10:41208692..41208723,-p@chr10:41208692..41208723
-
Mm9::chr10:61188895..61188907,+p@chr10:61188895..61188907
+
Mm9::chr10:61188929..61188936,+p@chr10:61188929..61188936
+
Mm9::chr10:76337225..76337243,-p@chr10:76337225..76337243
-
Mm9::chr10:77520022..77520033,+p@chr10:77520022..77520033
+
Mm9::chr10:77520043..77520048,+p@chr10:77520043..77520048
+
Mm9::chr11:42753132..42753136,+p@chr11:42753132..42753136
+
Mm9::chr11:72812571..72812594,+p2@P2rx1
Mm9::chr11:72812630..72812639,+p4@P2rx1
Mm9::chr11:87912441..87912452,+p12@Cuedc1
Mm9::chr11:89594966..89594985,-p@chr11:89594966..89594985
-
Mm9::chr11:89594994..89595022,-p@chr11:89594994..89595022
-
Mm9::chr11:89595040..89595050,-p@chr11:89595040..89595050
-
Mm9::chr12:58515137..58515153,+p@chr12:58515137..58515153
+
Mm9::chr12:80992112..80992129,-p@chr12:80992112..80992129
-
Mm9::chr12:80992302..80992309,+p@chr12:80992302..80992309
+
Mm9::chr12:81608191..81608194,+p1@2310002D06Rik
Mm9::chr13:47161800..47161811,+p4@Kdm1b
Mm9::chr13:47161817..47161832,+p2@Kdm1b
Mm9::chr13:53734594..53734605,-p2@uc007qnx.1
Mm9::chr14:29722238..29722242,-p@chr14:29722238..29722242
-
Mm9::chr14:34965659..34965672,-p1@Ppyr1
Mm9::chr14:55545845..55545865,-p3@Efs
Mm9::chr14:68331267..68331286,-p@chr14:68331267..68331286
-
Mm9::chr15:36485068..36485103,-p@chr15:36485068..36485103
-
Mm9::chr15:36485291..36485294,-p2@Snx31
Mm9::chr15:36485311..36485334,-p1@Snx31
Mm9::chr15:58237385..58237400,+p@chr15:58237385..58237400
+
Mm9::chr15:84847568..84847571,+p2@Upk3a
Mm9::chr15:84847593..84847630,+p1@Upk3a
Mm9::chr15:84847637..84847642,+p3@Upk3a
Mm9::chr16:38783626..38783638,-p@chr16:38783626..38783638
-
Mm9::chr16:38783715..38783726,-p@chr16:38783715..38783726
-
Mm9::chr16:38783833..38783849,-p@chr16:38783833..38783849
-
Mm9::chr16:38783973..38783979,-p@chr16:38783973..38783979
-
Mm9::chr16:38800306..38800322,-p1@Upk1b
Mm9::chr16:38800330..38800341,-p4@Upk1b
Mm9::chr16:38800348..38800359,-p3@Upk1b
Mm9::chr16:38800390..38800399,-p5@Upk1b
Mm9::chr16:44943814..44943823,+p4@Cd200r3
Mm9::chr16:44943850..44943865,+p2@Cd200r3
Mm9::chr17:12881424..12881431,-p@chr17:12881424..12881431
-
Mm9::chr17:12881635..12881640,-p@chr17:12881635..12881640
-
Mm9::chr17:24078882..24078896,+p2@Sbp
Mm9::chr17:24079336..24079341,+p1@Sbp
Mm9::chr18:25224170..25224198,+p@chr18:25224170..25224198
+
Mm9::chr18:44429732..44429737,+p2@Npy6r
Mm9::chr18:44429756..44429789,+p1@Npy6r
Mm9::chr18:44429795..44429800,+p3@Npy6r
Mm9::chr19:24933890..24933896,-p@chr19:24933890..24933896
-
Mm9::chr19:24936652..24936663,-p6@Pgm5
Mm9::chr19:24936670..24936687,-p4@Pgm5
Mm9::chr19:24936711..24936722,-p5@Pgm5
Mm9::chr19:34791339..34791346,-p@chr19:34791339..34791346
-
Mm9::chr19:34791405..34791413,-p@chr19:34791405..34791413
-
Mm9::chr19:38118250..38118291,-p4@Myof
Mm9::chr19:40586571..40586576,-p@chr19:40586571..40586576
-
Mm9::chr19:40639463..40639477,-p@chr19:40639463..40639477
-
Mm9::chr19:40639485..40639503,-p@chr19:40639485..40639503
-
Mm9::chr19:58073599..58073605,+p@chr19:58073599..58073605
+
Mm9::chr19:7001596..7001609,+p@chr19:7001596..7001609
+
Mm9::chr1:135128602..135128627,+p@chr1:135128602..135128627
+
Mm9::chr1:74077398..74077420,-p@chr1:74077398..74077420
-
Mm9::chr1:74077436..74077452,-p@chr1:74077436..74077452
-
Mm9::chr1:74077455..74077468,-p@chr1:74077455..74077468
-
Mm9::chr1:74077471..74077481,-p@chr1:74077471..74077481
-
Mm9::chr1:75358624..75358639,+p5@Des
Mm9::chr2:130732055..130732069,-p2@ENSMUST00000128176
Mm9::chr2:130838105..130838108,-p@chr2:130838105..130838108
-
Mm9::chr2:130850842..130850861,-p@chr2:130850842..130850861
-
Mm9::chr2:130850883..130850895,-p@chr2:130850883..130850895
-
Mm9::chr2:135755239..135755248,+p@chr2:135755239..135755248
+
Mm9::chr2:35519156..35519171,+p@chr2:35519156..35519171
+
Mm9::chr2:72070352..72070364,-p1@ENSMUST00000128165
p1@uc008kbr.1
Mm9::chr2:9274095..9274107,+p2@ENSMUST00000144870
p2@uc008iha.1
p2@uc008ihb.1
Mm9::chr2:9274108..9274126,+p1@ENSMUST00000144870
p1@uc008iha.1
p1@uc008ihb.1
Mm9::chr2:9809451..9809469,-p6@Gata3
Mm9::chr3:107820573..107820580,-p@chr3:107820573..107820580
-
Mm9::chr3:122817156..122817173,-p@chr3:122817156..122817173
-
Mm9::chr3:122817264..122817301,-p@chr3:122817264..122817301
-
Mm9::chr4:117650200..117650211,+p@chr4:117650200..117650211
+
Mm9::chr4:131493080..131493098,-p12@Epb4.1
Mm9::chr4:138539616..138539638,+p@chr4:138539616..138539638
+
Mm9::chr4:148334463..148334474,+p1@ENSMUST00000153443
Mm9::chr4:41011430..41011458,-p@chr4:41011430..41011458
-
Mm9::chr4:41154091..41154099,-p@chr4:41154091..41154099
-
Mm9::chr4:41578693..41578705,+p4@Dnaic1
Mm9::chr4:41586391..41586438,+p1@ENSMUST00000155382
Mm9::chr4:53416435..53416446,-p1@ENSMUST00000154377
Mm9::chr4:84851024..84851035,+p5@Sh3gl2
Mm9::chr4:84851040..84851053,+p4@Sh3gl2
Mm9::chr5:136514641..136514673,+p2@Upk3b
Mm9::chr5:87332837..87332846,+p@chr5:87332837..87332846
+
Mm9::chr5:87332887..87332894,+p@chr5:87332887..87332894
+
Mm9::chr5:92827077..92827083,+p@chr5:92827077..92827083
+
Mm9::chr6:54101026..54101046,-p1@uc009bzp.1
Mm9::chr7:114836732..114836758,+p@chr7:114836732..114836758
+
Mm9::chr7:114836782..114836792,+p@chr7:114836782..114836792
+
Mm9::chr7:114836798..114836805,+p@chr7:114836798..114836805
+
Mm9::chr7:138317914..138317917,+p1@5430419D17Rik
Mm9::chr7:31388537..31388547,-p@chr7:31388537..31388547
-
Mm9::chr7:31388578..31388584,-p@chr7:31388578..31388584
-
Mm9::chr7:31388597..31388604,-p@chr7:31388597..31388604
-
Mm9::chr7:31388822..31388831,-p@chr7:31388822..31388831
-
Mm9::chr7:31390216..31390224,-p@chr7:31390216..31390224
-
Mm9::chr7:31391935..31391967,+p@chr7:31391935..31391967
+
Mm9::chr7:31397750..31397763,-p2@Upk1a
Mm9::chr7:31397780..31397790,-p3@Upk1a
Mm9::chr7:4609346..4609385,-p@chr7:4609346..4609385
-
Mm9::chr7:74904650..74904665,-p2@Synm
Mm9::chr8:24250573..24250599,+p4@Ank1
Mm9::chr8:24250624..24250640,+p6@Ank1
Mm9::chr8:35074682..35074730,+p@chr8:35074682..35074730
+
Mm9::chr8:46849227..46849287,+p8@Sorbs2
Mm9::chr8:46849292..46849305,+p26@Sorbs2
Mm9::chr9:109794961..109794968,-p@chr9:109794961..109794968
-
Mm9::chr9:21905578..21905596,+p@chr9:21905578..21905596
+
Mm9::chr9:21912671..21912688,-p@chr9:21912671..21912688
-
Mm9::chr9:30978105..30978109,-p@chr9:30978105..30978109
-
Mm9::chr9:30978116..30978124,-p@chr9:30978116..30978124
-
Mm9::chr9:44262798..44262809,-p2@Upk2
Mm9::chr9:44262813..44262825,-p3@Upk2
Mm9::chr9:44262840..44262856,-p1@Upk2
Mm9::chr9:48260437..48260446,+p@chr9:48260437..48260446
+
Mm9::chr9:65347718..65347722,-p@chr9:65347718..65347722
-
Mm9::chr9:65360513..65360526,-p@chr9:65360513..65360526
-
Mm9::chr9:74005044..74005065,+p@chr9:74005044..74005065
+
Mm9::chr9:96425825..96425834,-p@chr9:96425825..96425834
-
Mm9::chr9:96425983..96425992,+p@chr9:96425983..96425992
+
Mm9::chr9:99533062..99533077,+p@chr9:99533062..99533077
+
Mm9::chrX:156362847..156362870,+p@chrX:156362847..156362870
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030018Z disc0.00173554666552864
GO:0031674I band0.00173554666552864
GO:0001601peptide YY receptor activity0.00173554666552864
GO:0030017sarcomere0.00539675085493983
GO:0044449contractile fiber part0.00539675085493983
GO:0030016myofibril0.00539675085493983
GO:0007618mating0.00539675085493983
GO:0043292contractile fiber0.00539675085493983
GO:0004983neuropeptide Y receptor activity0.00688109482655169
GO:0042923neuropeptide binding0.0341291961064185
GO:0008188neuropeptide receptor activity0.0341291961064185
GO:0032753positive regulation of interleukin-4 production0.0345148742672437



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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