Personal tools

MCL coexpression mm9:447: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00592926063186768,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.0957279749172259,-0.00547158253020568,-0.0019615098025016,-0.00788997388872566,0.00266255403796497,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.000998909442732776,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.0745408710876782,0.0355133431769847,0.0447974356286662,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.943525518421235,0.904645875383043,0.386010485283985,0.266069507687269,0.213496750126414,0.837074795795368,0.971590682408859,0.20115590544671,0.164208846383408,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.30998438089547,0.427689780774786,0.29682926221191,-0.00318298606199088,0.0138047229551555,-0.00788997388872566,0.0100279944591073,0.00836295130822664,0.115685845490453,0.181304868791893,0.124083446542508,0.128485970524894,0.452805638690617,-0.00536956476620361,-0.00465478955011389,-0.00301338623403321,0.0164927218788877,0.00740453841995577,-0.00788997388872566,-0.00555177876576749,-0.00788997388872566,0.0300463647624711,0.0241402229056472,0.0277005556520007,0.00442029223283556,0.0156834692805651,-0.00788997388872566,0.0109804988371498,0.00351549740180338,0.0503413907865667,0.0267214340102229,0.0189136115930932,0.0133041276022586,-0.00428726892981512,-0.00602883799238557,0.177267932979132,0.12869753047121,-0.00788997388872566,0.00313573258304058,0.0929530593638257,0.0299398204538989,0.0937414891664669,0.359776264622504,0.273118835794232,0.220460530517164,-0.00452373613609293,0.406087010377581,0.0891670893109251,0.11513998435504,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.096525025963661,0.182547866422576,0.116613210248015,-0.00028067189776417,0.0314198948796329,0.0220913502826635,0.033476929505063,0.058208872457903,0.0552879762040262,0.129501414355952,0.5973600494274,0.117103479273528,0.168828998103589,0.165986977380441,0.228112848317593,0.018990056713543,0.0659119158046176,0.147934778199181,0.140004137227736,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.0095017762579873,0.00173406982034534,-0.00788997388872566,-0.00788997388872566,0.0182897322266904,0.0106344185225828,0.0184940075073022,0.0154857989630482,0.175259261396004,0.0140732600823363,0.0810912944161033,-0.00476498971054265,-0.00788997388872566,-0.00788997388872566,0.0131847169137743,0.0282993668841134,0.0448677373283792,0.0496663145591026,0.119336411018461,-0.00788997388872566,0.000959508436325776,0.0272032057546376,0.0452864061861135,0.0326759399841474,0.0803273085850382,0.0808256817788967,0.00530767646336308,-0.00788997388872566,-0.00788997388872566,-0.00150054321079922,-0.00788997388872566,-0.00788997388872566,0.00902881392035161,0.00839474441568468,0.0196424734354925,0.00310525940834559,0.0134744705474533,0.0222787254140398,0.034741668767329,0.0450504254826122,0.0889774502752488,0.0791598679527729,0.059347188173032,0.123946549679633,0.111417376224253,0.0404795532427705,0.031732248304176,-0.000596540496540895,0.020938553685728,-0.00788997388872566,0.00277992369112067,0.00139995935327427,0.0235049008837443,0.0168989175718728,0.000346559936953094,0.112895643357961,0.0149635398946042,0.0236483776149332,0.0534541785983137,0.0570629387077344,0.185428556410944,0.121070534315008,0.0981000216654585,0.000983643031149093,-0.00236267235617048,-0.00788997388872566,0.00631603186621342,0.00954142737301774,0.000159035663361623,0.0159821444004859,0.044401875114693,0.0353912532560597,0.0537925068701766,0.0348947812848236,-0.00788997388872566,0.0012787456313965,0.0128364263911764,-0.00317143701284238,0.0242445627858385,0.00949489058291999,0.041170672878369,0.124742740850247,0.0484161231909005,0.223925377143942,0.110075578195386,0.0292758214754931,0.117960191103903,0.0911882659312935,0.200409359912067,0.448097441176536,-0.00788997388872566,0.0278744169942213,0.01409753804738,0.0307755661585382,0.029143451487496,0.0520857888064122,0.0608825033147365,0.0355497464545985,0.0474937309720099,0.107559359568688,0.280140042761411,0.257718464741133,0.315207126440327,-0.00788997388872566,-0.00788997388872566,0.0679734212464235,0.169610842384873,0.0195036088028274,0.0152195004258583,0.0116360376141965,0.101754790164174,0.107347505306568,0.128899783980566,0.0744958983813145,0.0431004136557109,0.067923127996108,0.0383795979978166,0.0809836853824288,0.100192377178691,0.0929094995359253,0.0134644569411836,0.113157707190819,0.0617651826232839,0.0405078073151971,0.194524836534878,0.160100204486206,-0.00788997388872566,-0.00788997388872566,-0.00347599847838835,0.0237967915413772,0.00580651505011539,0.0126451159964672,0.0563567474143241,0.035189436984216,0.0530568796536624,0.0656723280296425,0.107303786031252,0.0250588097465818,-0.00788997388872566,0.00454106035945488,0.0069934214753699,0.00879284624373926,0.0379824509418112,0.0110529873687739,0.0536241480579138,0.0883748614007783,0.122680458503383,0.0923375031153032,0.126540933398139,0.114152933825466,0.0720364928410481,0.0787884894622984,0.0559609622023141,0.156200278862278,0.0417251603302995,0.0512997843232236,0.0140078573186716,0.00513172683948622,0.00533669359801104,0.0367691801982916,0.0367745274910148,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.214693055406987,-0.00788997388872566,-0.00316168314102368,-0.00264975579585689,0.00588581022808659,0.0215500185692406,0.0695195712581769,0.0882247677333889,0.0922216321197868,0.0828701170987394,0.166360916358108,-0.00788997388872566,-0.00433025466235252,-0.000586975878319565,-0.00335065583836581,-0.00788997388872566,0.00407441629896992,0.00571738655818395,0.0105299889245965,0.0408741315498971,0.0444321349909835,0.0179749627161454,0.0410466844707759,-0.00317430235309141,-0.00289448094832984,-0.00788997388872566,-0.00368270103251985,0.0145465201962567,-0.00499033835127259,0.00748817695479102,0.00418076007925781,-0.00238973186570258,0.00661907631200349,0.0109138177914979,0.00797520589694991,0.0197858418031825,0.116418255693257,-0.00788997388872566,-0.00569512251552891,-0.00392527166213793,0.277834247933375,0.250111674524187,0.107717994933702,0.118768788526746,0.0969184896931616,0.00354799503134405,0.00178353143502181,0.0152511877164907,0.000212755964647188,0.0187713406358278,-0.00788997388872566,0.00528771112305416,0.020603707804607,0.0112051058230588,0.0134280487203302,-0.00536730262063187,0.0092659597494909,0.00766862798169144,0.0263475418463703,-0.00788997388872566,0.000732884588782694,0.0211540804432901,0.0104968570431727,0.0189972570506956,0.00362133326159618,0.0256729665043989,0.00911616305519496,0.0207386287058623,0.0183410665899876,0.0144919106651669,0.0219640432641304,0.021864278279511,0.0313129466660585,0.00974074573073905,0.0131589894711943,0.0263226227958246,0.0171519057654242,0.0194258009952723,0.00597752291512185,0.0413081550033932,0.00647925583601491,0.040674269310557,0.0256419710429721,0.0108931751253939,0.026246934954864,0.011344315620856,0.015904853754797,0.0314271262845603,0.013725458863711,0.0346419080261905,0.0652183046535835,0.0360429997948057,0.107853263828502,0.202632224964244,0.191348276697732,0.152502322829895
|coexpression_dpi_cluster_scores_mean=-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00592926063186768,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.0957279749172259,-0.00547158253020568,-0.0019615098025016,-0.00788997388872566,0.00266255403796497,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.000998909442732776,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.0745408710876782,0.0355133431769847,0.0447974356286662,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.943525518421235,0.904645875383043,0.386010485283985,0.266069507687269,0.213496750126414,0.837074795795368,0.971590682408859,0.20115590544671,0.164208846383408,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.30998438089547,0.427689780774786,0.29682926221191,-0.00318298606199088,0.0138047229551555,-0.00788997388872566,0.0100279944591073,0.00836295130822664,0.115685845490453,0.181304868791893,0.124083446542508,0.128485970524894,0.452805638690617,-0.00536956476620361,-0.00465478955011389,-0.00301338623403321,0.0164927218788877,0.00740453841995577,-0.00788997388872566,-0.00555177876576749,-0.00788997388872566,0.0300463647624711,0.0241402229056472,0.0277005556520007,0.00442029223283556,0.0156834692805651,-0.00788997388872566,0.0109804988371498,0.00351549740180338,0.0503413907865667,0.0267214340102229,0.0189136115930932,0.0133041276022586,-0.00428726892981512,-0.00602883799238557,0.177267932979132,0.12869753047121,-0.00788997388872566,0.00313573258304058,0.0929530593638257,0.0299398204538989,0.0937414891664669,0.359776264622504,0.273118835794232,0.220460530517164,-0.00452373613609293,0.406087010377581,0.0891670893109251,0.11513998435504,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.096525025963661,0.182547866422576,0.116613210248015,-0.00028067189776417,0.0314198948796329,0.0220913502826635,0.033476929505063,0.058208872457903,0.0552879762040262,0.129501414355952,0.5973600494274,0.117103479273528,0.168828998103589,0.165986977380441,0.228112848317593,0.018990056713543,0.0659119158046176,0.147934778199181,0.140004137227736,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.0095017762579873,0.00173406982034534,-0.00788997388872566,-0.00788997388872566,0.0182897322266904,0.0106344185225828,0.0184940075073022,0.0154857989630482,0.175259261396004,0.0140732600823363,0.0810912944161033,-0.00476498971054265,-0.00788997388872566,-0.00788997388872566,0.0131847169137743,0.0282993668841134,0.0448677373283792,0.0496663145591026,0.119336411018461,-0.00788997388872566,0.000959508436325776,0.0272032057546376,0.0452864061861135,0.0326759399841474,0.0803273085850382,0.0808256817788967,0.00530767646336308,-0.00788997388872566,-0.00788997388872566,-0.00150054321079922,-0.00788997388872566,-0.00788997388872566,0.00902881392035161,0.00839474441568468,0.0196424734354925,0.00310525940834559,0.0134744705474533,0.0222787254140398,0.034741668767329,0.0450504254826122,0.0889774502752488,0.0791598679527729,0.059347188173032,0.123946549679633,0.111417376224253,0.0404795532427705,0.031732248304176,-0.000596540496540895,0.020938553685728,-0.00788997388872566,0.00277992369112067,0.00139995935327427,0.0235049008837443,0.0168989175718728,0.000346559936953094,0.112895643357961,0.0149635398946042,0.0236483776149332,0.0534541785983137,0.0570629387077344,0.185428556410944,0.121070534315008,0.0981000216654585,0.000983643031149093,-0.00236267235617048,-0.00788997388872566,0.00631603186621342,0.00954142737301774,0.000159035663361623,0.0159821444004859,0.044401875114693,0.0353912532560597,0.0537925068701766,0.0348947812848236,-0.00788997388872566,0.0012787456313965,0.0128364263911764,-0.00317143701284238,0.0242445627858385,0.00949489058291999,0.041170672878369,0.124742740850247,0.0484161231909005,0.223925377143942,0.110075578195386,0.0292758214754931,0.117960191103903,0.0911882659312935,0.200409359912067,0.448097441176536,-0.00788997388872566,0.0278744169942213,0.01409753804738,0.0307755661585382,0.029143451487496,0.0520857888064122,0.0608825033147365,0.0355497464545985,0.0474937309720099,0.107559359568688,0.280140042761411,0.257718464741133,0.315207126440327,-0.00788997388872566,-0.00788997388872566,0.0679734212464235,0.169610842384873,0.0195036088028274,0.0152195004258583,0.0116360376141965,0.101754790164174,0.107347505306568,0.128899783980566,0.0744958983813145,0.0431004136557109,0.067923127996108,0.0383795979978166,0.0809836853824288,0.100192377178691,0.0929094995359253,0.0134644569411836,0.113157707190819,0.0617651826232839,0.0405078073151971,0.194524836534878,0.160100204486206,-0.00788997388872566,-0.00788997388872566,-0.00347599847838835,0.0237967915413772,0.00580651505011539,0.0126451159964672,0.0563567474143241,0.035189436984216,0.0530568796536624,0.0656723280296425,0.107303786031252,0.0250588097465818,-0.00788997388872566,0.00454106035945488,0.0069934214753699,0.00879284624373926,0.0379824509418112,0.0110529873687739,0.0536241480579138,0.0883748614007783,0.122680458503383,0.0923375031153032,0.126540933398139,0.114152933825466,0.0720364928410481,0.0787884894622984,0.0559609622023141,0.156200278862278,0.0417251603302995,0.0512997843232236,0.0140078573186716,0.00513172683948622,0.00533669359801104,0.0367691801982916,0.0367745274910148,-0.00788997388872566,-0.00788997388872566,-0.00788997388872566,0.214693055406987,-0.00788997388872566,-0.00316168314102368,-0.00264975579585689,0.00588581022808659,0.0215500185692406,0.0695195712581769,0.0882247677333889,0.0922216321197868,0.0828701170987394,0.166360916358108,-0.00788997388872566,-0.00433025466235252,-0.000586975878319565,-0.00335065583836581,-0.00788997388872566,0.00407441629896992,0.00571738655818395,0.0105299889245965,0.0408741315498971,0.0444321349909835,0.0179749627161454,0.0410466844707759,-0.00317430235309141,-0.00289448094832984,-0.00788997388872566,-0.00368270103251985,0.0145465201962567,-0.00499033835127259,0.00748817695479102,0.00418076007925781,-0.00238973186570258,0.00661907631200349,0.0109138177914979,0.00797520589694991,0.0197858418031825,0.116418255693257,-0.00788997388872566,-0.00569512251552891,-0.00392527166213793,0.277834247933375,0.250111674524187,0.107717994933702,0.118768788526746,0.0969184896931616,0.00354799503134405,0.00178353143502181,0.0152511877164907,0.000212755964647188,0.0187713406358278,-0.00788997388872566,0.00528771112305416,0.020603707804607,0.0112051058230588,0.0134280487203302,-0.00536730262063187,0.0092659597494909,0.00766862798169144,0.0263475418463703,-0.00788997388872566,0.000732884588782694,0.0211540804432901,0.0104968570431727,0.0189972570506956,0.00362133326159618,0.0256729665043989,0.00911616305519496,0.0207386287058623,0.0183410665899876,0.0144919106651669,0.0219640432641304,0.021864278279511,0.0313129466660585,0.00974074573073905,0.0131589894711943,0.0263226227958246,0.0171519057654242,0.0194258009952723,0.00597752291512185,0.0413081550033932,0.00647925583601491,0.040674269310557,0.0256419710429721,0.0108931751253939,0.026246934954864,0.011344315620856,0.015904853754797,0.0314271262845603,0.013725458863711,0.0346419080261905,0.0652183046535835,0.0360429997948057,0.107853263828502,0.202632224964244,0.191348276697732,0.152502322829895
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682179984609265,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0575599666346418,0,0,0,0,0,0,0,0,0.905807846587668,0.843932502552317,0.392410966276837,0.251003064477134,0.157169655903251,0.812388851170752,0.980226853368447,0.152275885725811,0,0,0,0,0.307290125850945,0.386082699468206,0.307783515127471,0,0,0,0,0,0,0,0,0.113809739605487,0.332974415283731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0617533076901792,0,0,0,0,0,0.198582584603541,0,0,0,0,0,0.0570741246689917,0.341041059213789,0.309447899732342,0.232151882621976,0,0.552245826451349,0,0,0,0,0,0.0469568706916304,0.100004302423367,0.0601091194109999,0,0,0,0.00832770291578035,0.0482820047261801,0.0514097768499148,0.0959343498639139,0.606014262910582,0,0.121735003810417,0.0866592903778752,0.171689969376673,0,0.0588819374226318,0.0825867363219064,0.098801861608942,0,0,0,0,0,0,0,0,0,0,0,0.137740408373976,0,0.0829439327499637,0,0,0,0,0.0285860945550467,0,0.0388988969149198,0.0999233952154288,0,0,0,0,0,0,0.0812688455295622,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0661618130246221,0.0660154575426048,0.0652575597868509,0.0592603993571966,0.0861996515928926,0.0546921007390138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0849828766602549,0.0788703512227347,0,0,0,0,0,0,0,0.0308570400749393,0.0371079232219096,0,0,0,0,0,0,0,0,0,0.0652566657696677,0,0,0.137398724818722,0,0.097805083983237,0.0716601710131013,0,0.425335076176854,0,0,0,0,0,0,0.0774164737207147,0,0,0.0642538110976656,0.259908275861658,0.128841727545421,0.271352308798326,0,0,0,0.10582914506561,0,0,0,0.0977676536600382,0.119093565942036,0,0.0320846375199781,0,0.0873549591356574,0,0,0.111348509539896,0.144663790035931,0,0.108524491213051,0.0711694759496908,0,0.174615154231399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.083442441818608,0.0339049335698479,0.0662835200988411,0.0650059127791652,0.0494606362651129,0.0929818051526577,0.0660055475634404,0.111087966368681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054943952156948,0.034489466458534,0,0.0529304404135566,0.209873913294111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887491219977394,0,0,0,0.198538541943989,0.243219149393638,0.0730404042754446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0.0242538736058389,0,0,0,0,0,0,0,0,0,0.0390607415003592,0,0,0,0,0,0,0,0,0,0,0.0968441960560167,0,0.0845301845292944,0.0760168881589905,0.158719081855703,0.0905641158318875
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:41, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:70595834..70595841,-p@chr14:70595834..70595841
-
Mm9::chr1:135807612..135807626,-p@chr1:135807612..135807626
-
Mm9::chr1:135808073..135808085,-p@chr1:135808073..135808085
-
Mm9::chr1:135808898..135808920,-p@chr1:135808898..135808920
-
Mm9::chr1:135809003..135809026,-p@chr1:135809003..135809026
-
Mm9::chr1:135809112..135809124,-p@chr1:135809112..135809124
-
Mm9::chr1:135811198..135811208,-p@chr1:135811198..135811208
-
Mm9::chr1:135811274..135811294,-p@chr1:135811274..135811294
-
Mm9::chr1:135811329..135811343,-p@chr1:135811329..135811343
-
Mm9::chr1:135811347..135811358,-p@chr1:135811347..135811358
-
Mm9::chr1:135811406..135811415,-p@chr1:135811406..135811415
-
Mm9::chr1:135811496..135811501,-p@chr1:135811496..135811501
-
Mm9::chr1:135811692..135811710,-p@chr1:135811692..135811710
-
Mm9::chr1:135811745..135811775,-p@chr1:135811745..135811775
-
Mm9::chr1:135811793..135811842,-p@chr1:135811793..135811842
-
Mm9::chr1:135811867..135811872,-p@chr1:135811867..135811872
-
Mm9::chr1:135811882..135811900,-p@chr1:135811882..135811900
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:447&oldid=2149733"