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MCL coexpression mm9:822: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0030274;LIM domain binding;0.031311569005268;16825!GO:0045647;negative regulation of erythrocyte differentiation;0.031311569005268;16825!GO:0003828;alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity;0.031311569005268;20449!GO:0021692;cerebellar Purkinje cell layer morphogenesis;0.031311569005268;16825!GO:0045646;regulation of erythrocyte differentiation;0.031311569005268;16825!GO:0021694;cerebellar Purkinje cell layer formation;0.031311569005268;16825!GO:0021702;cerebellar Purkinje cell differentiation;0.031311569005268;16825!GO:0007264;small GTPase mediated signal transduction;0.031311569005268;16801,246710!GO:0009948;anterior/posterior axis specification;0.031311569005268;16825!GO:0021697;cerebellar cortex formation;0.031311569005268;16825!GO:0021533;cell differentiation in hindbrain;0.031311569005268;16825!GO:0021680;cerebellar Purkinje cell layer development;0.0329351728611453;16825!GO:0021696;cerebellar cortex morphogenesis;0.0329351728611453;16825!GO:0021587;cerebellum morphogenesis;0.0329351728611453;16825!GO:0021575;hindbrain morphogenesis;0.0329351728611453;16825!GO:0009798;axis specification;0.0329351728611453;16825!GO:0021695;cerebellar cortex development;0.0329351728611453;16825!GO:0045638;negative regulation of myeloid cell differentiation;0.0329351728611453;16825!GO:0008373;sialyltransferase activity;0.0329351728611453;20449!GO:0022037;metencephalon development;0.0339951706826381;16825!GO:0021549;cerebellum development;0.0339951706826381;16825!GO:0030173;integral to Golgi membrane;0.0339951706826381;20449!GO:0031228;intrinsic to Golgi membrane;0.0339951706826381;20449!GO:0001702;gastrulation with mouth forming second;0.040377673861967;16825!GO:0045637;regulation of myeloid cell differentiation;0.0437497994423553;16825!GO:0030218;erythrocyte differentiation;0.0444636384954912;16825!GO:0030902;hindbrain development;0.0485829209071958;16825!
|gostat_on_MCL_coexpression=GO:0030274;LIM domain binding;0.031311569005268;16825!GO:0045647;negative regulation of erythrocyte differentiation;0.031311569005268;16825!GO:0003828;alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity;0.031311569005268;20449!GO:0021692;cerebellar Purkinje cell layer morphogenesis;0.031311569005268;16825!GO:0045646;regulation of erythrocyte differentiation;0.031311569005268;16825!GO:0021694;cerebellar Purkinje cell layer formation;0.031311569005268;16825!GO:0021702;cerebellar Purkinje cell differentiation;0.031311569005268;16825!GO:0007264;small GTPase mediated signal transduction;0.031311569005268;16801,246710!GO:0009948;anterior/posterior axis specification;0.031311569005268;16825!GO:0021697;cerebellar cortex formation;0.031311569005268;16825!GO:0021533;cell differentiation in hindbrain;0.031311569005268;16825!GO:0021680;cerebellar Purkinje cell layer development;0.0329351728611453;16825!GO:0021696;cerebellar cortex morphogenesis;0.0329351728611453;16825!GO:0021587;cerebellum morphogenesis;0.0329351728611453;16825!GO:0021575;hindbrain morphogenesis;0.0329351728611453;16825!GO:0009798;axis specification;0.0329351728611453;16825!GO:0021695;cerebellar cortex development;0.0329351728611453;16825!GO:0045638;negative regulation of myeloid cell differentiation;0.0329351728611453;16825!GO:0008373;sialyltransferase activity;0.0329351728611453;20449!GO:0022037;metencephalon development;0.0339951706826381;16825!GO:0021549;cerebellum development;0.0339951706826381;16825!GO:0030173;integral to Golgi membrane;0.0339951706826381;20449!GO:0031228;intrinsic to Golgi membrane;0.0339951706826381;20449!GO:0001702;gastrulation with mouth forming second;0.040377673861967;16825!GO:0045637;regulation of myeloid cell differentiation;0.0437497994423553;16825!GO:0030218;erythrocyte differentiation;0.0444636384954912;16825!GO:0030902;hindbrain development;0.0485829209071958;16825!
}}
}}

Revision as of 12:47, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:70205025..70205099,-p4@Rhobtb2
Mm9::chr15:63891780..63891840,-p4@Fam49b
Mm9::chr19:46119482..46119617,-p1@Ldb1
Mm9::chr1:181476539..181476564,+p2@Cnst
Mm9::chr6:142912628..142912648,-p5@St8sia1
Mm9::chr6:142912655..142912712,-p1@St8sia1
Mm9::chr6:142912888..142912923,-p2@St8sia1
Mm9::chr6:142912924..142912958,-p4@St8sia1
Mm9::chr7:25689435..25689478,+p2@Arhgef1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030274LIM domain binding0.031311569005268
GO:0045647negative regulation of erythrocyte differentiation0.031311569005268
GO:0003828alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity0.031311569005268
GO:0021692cerebellar Purkinje cell layer morphogenesis0.031311569005268
GO:0045646regulation of erythrocyte differentiation0.031311569005268
GO:0021694cerebellar Purkinje cell layer formation0.031311569005268
GO:0021702cerebellar Purkinje cell differentiation0.031311569005268
GO:0007264small GTPase mediated signal transduction0.031311569005268
GO:0009948anterior/posterior axis specification0.031311569005268
GO:0021697cerebellar cortex formation0.031311569005268
GO:0021533cell differentiation in hindbrain0.031311569005268
GO:0021680cerebellar Purkinje cell layer development0.0329351728611453
GO:0021696cerebellar cortex morphogenesis0.0329351728611453
GO:0021587cerebellum morphogenesis0.0329351728611453
GO:0021575hindbrain morphogenesis0.0329351728611453
GO:0009798axis specification0.0329351728611453
GO:0021695cerebellar cortex development0.0329351728611453
GO:0045638negative regulation of myeloid cell differentiation0.0329351728611453
GO:0008373sialyltransferase activity0.0329351728611453
GO:0022037metencephalon development0.0339951706826381
GO:0021549cerebellum development0.0339951706826381
GO:0030173integral to Golgi membrane0.0339951706826381
GO:0031228intrinsic to Golgi membrane0.0339951706826381
GO:0001702gastrulation with mouth forming second0.040377673861967
GO:0045637regulation of myeloid cell differentiation0.0437497994423553
GO:0030218erythrocyte differentiation0.0444636384954912
GO:0030902hindbrain development0.0485829209071958



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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