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MCL coexpression mm9:953: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0006986;response to unfolded protein;0.000760466938137463;!GO:0051789;response to protein stimulus;0.000760466938137463;!GO:0005783;endoplasmic reticulum;0.00578683079327287;12282!GO:0006950;response to stress;0.00578683079327287;12282!GO:0009607;response to biotic stimulus;0.0119287071954611;!GO:0044444;cytoplasmic part;0.0119287071954611;319448,12282!GO:0005788;endoplasmic reticulum lumen;0.022777665929277;!GO:0042221;response to chemical stimulus;0.0354537894644572;!GO:0004860;protein kinase inhibitor activity;0.0382727595647032;!GO:0005615;extracellular space;0.0382727595647032;12282!GO:0019210;kinase inhibitor activity;0.0382727595647032;!GO:0001669;acrosome;0.0382727595647032;319448!GO:0044421;extracellular region part;0.0382727595647032;12282!GO:0005737;cytoplasm;0.0423176696192316;319448,12282!GO:0006469;negative regulation of protein kinase activity;0.0423176696192316;!GO:0033673;negative regulation of kinase activity;0.0423176696192316;!GO:0051348;negative regulation of transferase activity;0.0423176696192316;!GO:0045454;cell redox homeostasis;0.0423176696192316;!GO:0007286;spermatid development;0.0423176696192316;319448!GO:0048515;spermatid differentiation;0.0423176696192316;319448!GO:0043086;negative regulation of catalytic activity;0.0423176696192316;!GO:0031072;heat shock protein binding;0.0423176696192316;!GO:0009566;fertilization;0.0423176696192316;319448!GO:0012506;vesicle membrane;0.0462945999488851;319448!GO:0043231;intracellular membrane-bound organelle;0.0462945999488851;319448,12282!GO:0043227;membrane-bound organelle;0.0462945999488851;319448,12282!GO:0019887;protein kinase regulator activity;0.0462945999488851;!
|gostat_on_MCL_coexpression=GO:0006986;response to unfolded protein;0.000760466938137463;!GO:0051789;response to protein stimulus;0.000760466938137463;!GO:0005783;endoplasmic reticulum;0.00578683079327287;12282!GO:0006950;response to stress;0.00578683079327287;12282!GO:0009607;response to biotic stimulus;0.0119287071954611;!GO:0044444;cytoplasmic part;0.0119287071954611;319448,12282!GO:0005788;endoplasmic reticulum lumen;0.022777665929277;!GO:0042221;response to chemical stimulus;0.0354537894644572;!GO:0004860;protein kinase inhibitor activity;0.0382727595647032;!GO:0005615;extracellular space;0.0382727595647032;12282!GO:0019210;kinase inhibitor activity;0.0382727595647032;!GO:0001669;acrosome;0.0382727595647032;319448!GO:0044421;extracellular region part;0.0382727595647032;12282!GO:0005737;cytoplasm;0.0423176696192316;319448,12282!GO:0006469;negative regulation of protein kinase activity;0.0423176696192316;!GO:0033673;negative regulation of kinase activity;0.0423176696192316;!GO:0051348;negative regulation of transferase activity;0.0423176696192316;!GO:0045454;cell redox homeostasis;0.0423176696192316;!GO:0007286;spermatid development;0.0423176696192316;319448!GO:0048515;spermatid differentiation;0.0423176696192316;319448!GO:0043086;negative regulation of catalytic activity;0.0423176696192316;!GO:0031072;heat shock protein binding;0.0423176696192316;!GO:0009566;fertilization;0.0423176696192316;319448!GO:0012506;vesicle membrane;0.0462945999488851;319448!GO:0043231;intracellular membrane-bound organelle;0.0462945999488851;319448,12282!GO:0043227;membrane-bound organelle;0.0462945999488851;319448,12282!GO:0019887;protein kinase regulator activity;0.0462945999488851;!
}}
}}

Revision as of 12:49, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:119337147..119337214,+p1@Dnajc3
Mm9::chr14:73002752..73002810,-p2@Fndc3a
Mm9::chr1:36300977..36301021,-p2@Uggt1
Mm9::chr4:48292416..48292485,-p1@Erp44
Mm9::chr6:47746242..47746246,-p@chr6:47746242..47746246
-
Mm9::chr9:106794239..106794251,-p2@Manf
Mm9::chr9:44187619..44187707,+p1@Hyou1
Mm9::chr9:44200284..44200288,+p@chr9:44200284..44200288
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006986response to unfolded protein0.000760466938137463
GO:0051789response to protein stimulus0.000760466938137463
GO:0005783endoplasmic reticulum0.00578683079327287
GO:0006950response to stress0.00578683079327287
GO:0009607response to biotic stimulus0.0119287071954611
GO:0044444cytoplasmic part0.0119287071954611
GO:0005788endoplasmic reticulum lumen0.022777665929277
GO:0042221response to chemical stimulus0.0354537894644572
GO:0004860protein kinase inhibitor activity0.0382727595647032
GO:0005615extracellular space0.0382727595647032
GO:0019210kinase inhibitor activity0.0382727595647032
GO:0001669acrosome0.0382727595647032
GO:0044421extracellular region part0.0382727595647032
GO:0005737cytoplasm0.0423176696192316
GO:0006469negative regulation of protein kinase activity0.0423176696192316
GO:0033673negative regulation of kinase activity0.0423176696192316
GO:0051348negative regulation of transferase activity0.0423176696192316
GO:0045454cell redox homeostasis0.0423176696192316
GO:0007286spermatid development0.0423176696192316
GO:0048515spermatid differentiation0.0423176696192316
GO:0043086negative regulation of catalytic activity0.0423176696192316
GO:0031072heat shock protein binding0.0423176696192316
GO:0009566fertilization0.0423176696192316
GO:0012506vesicle membrane0.0462945999488851
GO:0043231intracellular membrane-bound organelle0.0462945999488851
GO:0043227membrane-bound organelle0.0462945999488851
GO:0019887protein kinase regulator activity0.0462945999488851



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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