MCL coexpression mm9:1761: Difference between revisions
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{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9 | ||
|coexpression_dpi_cluster_scores_mean=0.583567425890776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0268271461980388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284798071414601,0.23512823677113,0.204647221605677,0.145683724340222,0.45776186703429,0,0,0,0,0,0,0.313826284253657,0.368791782117141,0.163640037077766,0,0,0,0,0,0.250398536771808,0.25482853865192,0.582108555620193,0.468717057978419,0.532145540959367,0.132379154293962,0.226202914430403,0.295093670154039,0.32191597577056,0.355482460080695,0.165584656699458,0.0795966534054138,0.117708615492149,0.28781357454751,0.284456449539191,0.358627775064301,0.0528477856159898,0.116335807163396,0.104378001947555,0.248306307367437,0.264167420652586,0.247621620169353,0,0.0126557240951126,0,0,0,0,0,0,0.0114148249337983,0,0,0,0.427976927767638,0,0,0,0,0,0,0.00939137413832608,0,0,0.0138955327120455,0,0,0,0.0280022693073352,0,0,0.0117306995138079,0.0550443236814614,0.0473866643813626,0.017331858075575,0.0588822441549674,0,0.184433447149745,0.246104200051184,0,0,0,0,0.133074617906204,0.192528790890745,0.177063503141018,0.130477198492051,0.105110412936729,0.169920182246689,0.191829318483098,0,0.0101847058588194,0,0.344484776911618,0.407518875875488,0.413856921592907,0.515824455143395,0.712591560103575,0.676626284780999,0.876807300453709,0.81396768616178,0.71798168753708,0.03391170246785,0.128578155244334,0.102859144555572,0.0611099635088853,0.0768143869097288,0.025954225366728,0.0846709964288745,0,0,0,0,0.0163505044705796,0.0183000524034538,0,0,0.0156017201503903,0,0,0,0.0095923855235379,0,0.013203091508521,0,0,0,0.0109384201478028,0.11885787483588,0.418130599342809,0,0,0.0167927983835387,0.0662725884322324,0.0665558748202865,0.0453922764202967,0.0174411081149988,0.0302517186368327,0,0.013242737141506,0,0,0.0154709706802017,0,0,0.0157740702445469,0,0,0,0,0.015397408914535,0,0,0,0,0,0,0.0444069396059004,0.0155868231842077,0,0,0,0,0,0,0,0,0,0,0,0.0143320342026203,0,0,0.0952120175654882,0,0,0,0.0134518433834191,0,0,0,0,0,0.013180395865124,0.0257683455090842,0,0,0,0,0,0.148923445319874,0.175204796768706,0,0.0550574748645246,0.0476374263768144,0.0572607443207204,0,0.080880542972968,0.150193310809136,0.104736751566594,0.0590471227906,0.0845184947551516,0.0289327580071862,0.373276725481615,0,0,0,0,0,0,0,0,0.0224742000359274,0,0,0.0269331770942944,0,0.0477072078527396,0,0,0.076348350829278,0.171930824990085,0.0538942036622293,0.17772682991866,0.0283607942251904,0.0779831222119127,0.0951016903328597,0.064393907248509,0,0,0,0.0132567040197682,0.0243072977248494,0.010173622148774,0.00979491454394344,0.0132011095126881,0,0.18064316743613,0,0,0,0,0,0,0,0,0,0,0,0.0753492421614611,0.0339749559478771,0.0164916034429006,0,0.0109887904313896,0.0137957865834136,0,0.0105860880827113,0.0839495653176444,0,0,0,0,0.0105510834322885,0,0.00963840937126184,0,0.00866139862179864,0,0.0219851961141404,0.0238519118384212,0.0455963898010876,0.177093385845365,0.135854799417493,0.118561282523216,0.155521368597772,0.0366039826580792,0.0926065420035248,0.0454411634362518,0.0711993696584782,0.0562110587648701,0.0508700499616168,0.00797889783062888,0.0278467628728958,0.173434513036069,0,0,0,0,0,0,0,0,0.116498107279347,0.174020747261858,0.118019924186603,0.10471640728356,0.0453242346917408,0,0,0.0557800829717504,0.0324616355100336,0.147230527409451,0.205651014245979,0.440331641226222,0.319613839734018,0.227831016818304,0.212645486005083,0.129919785791691,0.284364165895469,0.21907626164934,0.141321920812677,0.170767302646003,0.200539926108735,0.244811864366974,0.191878636110057,0.203660114924003,0.172497036293421,0.169037898658841,0.182251545758549,0.166316599592319,0.192021887379903,0.14688748696588,0.273911905804298,0.188289660585529,0.187315323852627,0.228399643401822,0.216404105701958,0.201336922633937,0.232579479163249,0.217641223602015,0.184312137259568,0.196082166657364,0.167485365883415,0.122902795080975,0.126546846068996,0.136342589492493,0.201199918108441,0.279249648881705,0.205080036271768,0.174158412123771,0.0939903682267533,0.0346281249989609,0.112049923908982 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|coexpression_dpi_cluster_scores_mean=0.583567425890776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0268271461980388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284798071414601,0.23512823677113,0.204647221605677,0.145683724340222,0.45776186703429,0,0,0,0,0,0,0.313826284253657,0.368791782117141,0.163640037077766,0,0,0,0,0,0.250398536771808,0.25482853865192,0.582108555620193,0.468717057978419,0.532145540959367,0.132379154293962,0.226202914430403,0.295093670154039,0.32191597577056,0.355482460080695,0.165584656699458,0.0795966534054138,0.117708615492149,0.28781357454751,0.284456449539191,0.358627775064301,0.0528477856159898,0.116335807163396,0.104378001947555,0.248306307367437,0.264167420652586,0.247621620169353,0,0.0126557240951126,0,0,0,0,0,0,0.0114148249337983,0,0,0,0.427976927767638,0,0,0,0,0,0,0.00939137413832608,0,0,0.0138955327120455,0,0,0,0.0280022693073352,0,0,0.0117306995138079,0.0550443236814614,0.0473866643813626,0.017331858075575,0.0588822441549674,0,0.184433447149745,0.246104200051184,0,0,0,0,0.133074617906204,0.192528790890745,0.177063503141018,0.130477198492051,0.105110412936729,0.169920182246689,0.191829318483098,0,0.0101847058588194,0,0.344484776911618,0.407518875875488,0.413856921592907,0.515824455143395,0.712591560103575,0.676626284780999,0.876807300453709,0.81396768616178,0.71798168753708,0.03391170246785,0.128578155244334,0.102859144555572,0.0611099635088853,0.0768143869097288,0.025954225366728,0.0846709964288745,0,0,0,0,0.0163505044705796,0.0183000524034538,0,0,0.0156017201503903,0,0,0,0.0095923855235379,0,0.013203091508521,0,0,0,0.0109384201478028,0.11885787483588,0.418130599342809,0,0,0.0167927983835387,0.0662725884322324,0.0665558748202865,0.0453922764202967,0.0174411081149988,0.0302517186368327,0,0.013242737141506,0,0,0.0154709706802017,0,0,0.0157740702445469,0,0,0,0,0.015397408914535,0,0,0,0,0,0,0.0444069396059004,0.0155868231842077,0,0,0,0,0,0,0,0,0,0,0,0.0143320342026203,0,0,0.0952120175654882,0,0,0,0.0134518433834191,0,0,0,0,0,0.013180395865124,0.0257683455090842,0,0,0,0,0,0.148923445319874,0.175204796768706,0,0.0550574748645246,0.0476374263768144,0.0572607443207204,0,0.080880542972968,0.150193310809136,0.104736751566594,0.0590471227906,0.0845184947551516,0.0289327580071862,0.373276725481615,0,0,0,0,0,0,0,0,0.0224742000359274,0,0,0.0269331770942944,0,0.0477072078527396,0,0,0.076348350829278,0.171930824990085,0.0538942036622293,0.17772682991866,0.0283607942251904,0.0779831222119127,0.0951016903328597,0.064393907248509,0,0,0,0.0132567040197682,0.0243072977248494,0.010173622148774,0.00979491454394344,0.0132011095126881,0,0.18064316743613,0,0,0,0,0,0,0,0,0,0,0,0.0753492421614611,0.0339749559478771,0.0164916034429006,0,0.0109887904313896,0.0137957865834136,0,0.0105860880827113,0.0839495653176444,0,0,0,0,0.0105510834322885,0,0.00963840937126184,0,0.00866139862179864,0,0.0219851961141404,0.0238519118384212,0.0455963898010876,0.177093385845365,0.135854799417493,0.118561282523216,0.155521368597772,0.0366039826580792,0.0926065420035248,0.0454411634362518,0.0711993696584782,0.0562110587648701,0.0508700499616168,0.00797889783062888,0.0278467628728958,0.173434513036069,0,0,0,0,0,0,0,0,0.116498107279347,0.174020747261858,0.118019924186603,0.10471640728356,0.0453242346917408,0,0,0.0557800829717504,0.0324616355100336,0.147230527409451,0.205651014245979,0.440331641226222,0.319613839734018,0.227831016818304,0.212645486005083,0.129919785791691,0.284364165895469,0.21907626164934,0.141321920812677,0.170767302646003,0.200539926108735,0.244811864366974,0.191878636110057,0.203660114924003,0.172497036293421,0.169037898658841,0.182251545758549,0.166316599592319,0.192021887379903,0.14688748696588,0.273911905804298,0.188289660585529,0.187315323852627,0.228399643401822,0.216404105701958,0.201336922633937,0.232579479163249,0.217641223602015,0.184312137259568,0.196082166657364,0.167485365883415,0.122902795080975,0.126546846068996,0.136342589492493,0.201199918108441,0.279249648881705,0.205080036271768,0.174158412123771,0.0939903682267533,0.0346281249989609,0.112049923908982 | ||
|coexpression_dpi_cluster_scores_median=0.726239586231049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36326420548885,0.158173160405417,0.249863259792521,0.107200755467032,0.588277454879422,0,0,0,0,0,0,0.345157758033838,0.493592419892616,0,0,0,0,0,0,0.342106802711204,0.404298764158439,0.675120542095737,0.480738167154016,0.520296749210499,0,0.158886068781892,0.268913763785961,0.291913532817604,0.453079347071492,0,0.052188704109448,0.0620577069359474,0.28402535678302,0.26087928105239,0.408704566468946,0,0.193893011938994,0.0617533076901792,0.201194179703458,0.154458983811568,0.326007286088902,0,0,0,0,0,0,0,0,0,0,0,0,0.512350105789865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20018311764962,0.211745123527753,0,0,0,0,0.0606187686764715,0.163608743054207,0.211726890887182,0.0696031033168343,0.09889124026805,0.150933218241173,0.172230290669061,0,0,0,0.393240446651655,0.408485088532746,0.518385085902815,0.588942979926857,0.827807422977579,0.872940641312078,0.975684753365296,0.878471281081056,0.929541417875432,0,0.139316077492302,0.0703892716151147,0,0,0,0.0812688455295622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0828894264954325,0.552986254947576,0,0,0,0,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120936080462619,0.166976485593938,0,0,0,0,0,0,0.160047342874364,0,0,0.111348509539896,0,0.293133511567635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12724725138213,0.133577925442038,0,0.15493316250826,0,0.0712812415377886,0.0661577744756082,0,0,0,0,0,0,0,0,0,0,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179998145643094,0.10031596050676,0.0715236385554987,0.145309149361067,0,0.0598244186619439,0,0.0894177291216067,0.0797788474440915,0,0,0,0.0887491219977394,0,0,0,0,0,0,0,0,0,0.164449590503707,0.196699873644339,0,0,0,0,0,0,0,0.210244682285048,0.53073093428688,0.341461281889102,0.17208118264908,0.152051658298929,0.135986724295729,0.407514477173323,0.209006745960922,0.120876255993453,0.0978461107777356,0.245620709720879,0.288502238404483,0.193639056320997,0.277918984641994,0.212664309528237,0.169172763866184,0.129578075275077,0.198307218446548,0.261065738036311,0.0596387295197733,0.226790206858766,0.275859125630462,0.169342968499384,0.199037798091534,0.194418948264644,0.153227190892218,0.238475639215048,0.31223636859556,0.258834677388361,0.326803611095607,0.0924644954689594,0.144268359582519,0,0.165781451382873,0.141704700595215,0.175981558593572,0.230907198759394,0.155257708002722,0.0760168881589905,0,0.16546265671817 | |||
|gostat_on_MCL_coexpression=GO:0021902;commitment of a neuronal cell to a specific type of neuron in the forebrain;0.0076699720593875;18508!GO:0021877;forebrain neuron fate commitment;0.0076699720593875;18508!GO:0009950;dorsal/ventral axis specification;0.0131467225601383;18508!GO:0021798;forebrain dorsal/ventral pattern formation;0.0131467225601383;18508!GO:0022612;gland morphogenesis;0.0131467225601383;18508!GO:0021871;forebrain regionalization;0.0131467225601383;18508!GO:0007435;salivary gland morphogenesis;0.0131467225601383;18508!GO:0021879;forebrain neuron differentiation;0.0134202449153837;18508!GO:0021872;generation of neurons in the forebrain;0.013632891141377;18508!GO:0007431;salivary gland development;0.0145258107822522;18508!GO:0021543;pallium development;0.0145258107822522;18508!GO:0035272;exocrine system development;0.0145258107822522;18508!GO:0042462;eye photoreceptor cell development;0.0145258107822522;18508!GO:0045665;negative regulation of neuron differentiation;0.0145258107822522;18508!GO:0001754;eye photoreceptor cell differentiation;0.0145258107822522;18508!GO:0009798;axis specification;0.0145258107822522;18508!GO:0042461;photoreceptor cell development;0.0145258107822522;18508!GO:0003700;transcription factor activity;0.0145258107822522;18027,18508!GO:0021983;pituitary gland development;0.0145258107822522;18508!GO:0021536;diencephalon development;0.0146346514277602;18508!GO:0048663;neuron fate commitment;0.0146346514277602;18508!GO:0046530;photoreceptor cell differentiation;0.0146346514277602;18508!GO:0021537;telencephalon development;0.0153302789118187;18508!GO:0001709;cell fate determination;0.0153302789118187;18508!GO:0045664;regulation of neuron differentiation;0.0165553396912625;18508!GO:0009953;dorsal/ventral pattern formation;0.0244021728980764;18508!GO:0048592;eye morphogenesis;0.0244021728980764;18508!GO:0050767;regulation of neurogenesis;0.0246237656104948;18508!GO:0035270;endocrine system development;0.0253575616195415;18508!GO:0030334;regulation of cell migration;0.0265520884597201;18508!GO:0001764;neuron migration;0.0271757694889063;18508!GO:0051270;regulation of cell motility;0.0282380840094746;18508!GO:0040012;regulation of locomotion;0.0292356083395701;18508!GO:0048732;gland development;0.032466382107537;18508!GO:0043010;camera-type eye development;0.032466382107537;18508!GO:0007411;axon guidance;0.032466382107537;18508!GO:0045596;negative regulation of cell differentiation;0.032466382107537;18508!GO:0006355;regulation of transcription, DNA-dependent;0.032466382107537;18027,18508!GO:0006351;transcription, DNA-dependent;0.032466382107537;18027,18508!GO:0032774;RNA biosynthetic process;0.032466382107537;18027,18508!GO:0003677;DNA binding;0.032466382107537;18027,18508!GO:0009952;anterior/posterior pattern formation;0.032466382107537;18508!GO:0045449;regulation of transcription;0.032466382107537;18027,18508!GO:0030900;forebrain development;0.032466382107537;18508!GO:0045165;cell fate commitment;0.032466382107537;18508!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.032466382107537;18027,18508!GO:0006350;transcription;0.032466382107537;18027,18508!GO:0001654;eye development;0.032466382107537;18508!GO:0051093;negative regulation of developmental process;0.032466382107537;18508!GO:0010468;regulation of gene expression;0.0336349202078334;18027,18508!GO:0008285;negative regulation of cell proliferation;0.0350469293638884;18508!GO:0031323;regulation of cellular metabolic process;0.0350469293638884;18027,18508!GO:0019222;regulation of metabolic process;0.036975482139595;18027,18508!GO:0006260;DNA replication;0.0375366993120028;18027!GO:0016070;RNA metabolic process;0.0375366993120028;18027,18508!GO:0003002;regionalization;0.0401063015480455;18508!GO:0045595;regulation of cell differentiation;0.0405594831052453;18508!GO:0007409;axonogenesis;0.0405594831052453;18508!GO:0048667;neuron morphogenesis during differentiation;0.041488573222029;18508!GO:0048812;neurite morphogenesis;0.041488573222029;18508!GO:0007420;brain development;0.0450598351751236;18508!GO:0000904;cellular morphogenesis during differentiation;0.0450598351751236;18508!GO:0007423;sensory organ development;0.0450598351751236;18508!GO:0010467;gene expression;0.0455415637886521;18027,18508!GO:0031175;neurite development;0.0455415637886521;18508!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0455415637886521;18508!GO:0003676;nucleic acid binding;0.0462836843525849;18027,18508!GO:0048666;neuron development;0.0488857145340564;18508! | |gostat_on_MCL_coexpression=GO:0021902;commitment of a neuronal cell to a specific type of neuron in the forebrain;0.0076699720593875;18508!GO:0021877;forebrain neuron fate commitment;0.0076699720593875;18508!GO:0009950;dorsal/ventral axis specification;0.0131467225601383;18508!GO:0021798;forebrain dorsal/ventral pattern formation;0.0131467225601383;18508!GO:0022612;gland morphogenesis;0.0131467225601383;18508!GO:0021871;forebrain regionalization;0.0131467225601383;18508!GO:0007435;salivary gland morphogenesis;0.0131467225601383;18508!GO:0021879;forebrain neuron differentiation;0.0134202449153837;18508!GO:0021872;generation of neurons in the forebrain;0.013632891141377;18508!GO:0007431;salivary gland development;0.0145258107822522;18508!GO:0021543;pallium development;0.0145258107822522;18508!GO:0035272;exocrine system development;0.0145258107822522;18508!GO:0042462;eye photoreceptor cell development;0.0145258107822522;18508!GO:0045665;negative regulation of neuron differentiation;0.0145258107822522;18508!GO:0001754;eye photoreceptor cell differentiation;0.0145258107822522;18508!GO:0009798;axis specification;0.0145258107822522;18508!GO:0042461;photoreceptor cell development;0.0145258107822522;18508!GO:0003700;transcription factor activity;0.0145258107822522;18027,18508!GO:0021983;pituitary gland development;0.0145258107822522;18508!GO:0021536;diencephalon development;0.0146346514277602;18508!GO:0048663;neuron fate commitment;0.0146346514277602;18508!GO:0046530;photoreceptor cell differentiation;0.0146346514277602;18508!GO:0021537;telencephalon development;0.0153302789118187;18508!GO:0001709;cell fate determination;0.0153302789118187;18508!GO:0045664;regulation of neuron differentiation;0.0165553396912625;18508!GO:0009953;dorsal/ventral pattern formation;0.0244021728980764;18508!GO:0048592;eye morphogenesis;0.0244021728980764;18508!GO:0050767;regulation of neurogenesis;0.0246237656104948;18508!GO:0035270;endocrine system development;0.0253575616195415;18508!GO:0030334;regulation of cell migration;0.0265520884597201;18508!GO:0001764;neuron migration;0.0271757694889063;18508!GO:0051270;regulation of cell motility;0.0282380840094746;18508!GO:0040012;regulation of locomotion;0.0292356083395701;18508!GO:0048732;gland development;0.032466382107537;18508!GO:0043010;camera-type eye development;0.032466382107537;18508!GO:0007411;axon guidance;0.032466382107537;18508!GO:0045596;negative regulation of cell differentiation;0.032466382107537;18508!GO:0006355;regulation of transcription, DNA-dependent;0.032466382107537;18027,18508!GO:0006351;transcription, DNA-dependent;0.032466382107537;18027,18508!GO:0032774;RNA biosynthetic process;0.032466382107537;18027,18508!GO:0003677;DNA binding;0.032466382107537;18027,18508!GO:0009952;anterior/posterior pattern formation;0.032466382107537;18508!GO:0045449;regulation of transcription;0.032466382107537;18027,18508!GO:0030900;forebrain development;0.032466382107537;18508!GO:0045165;cell fate commitment;0.032466382107537;18508!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.032466382107537;18027,18508!GO:0006350;transcription;0.032466382107537;18027,18508!GO:0001654;eye development;0.032466382107537;18508!GO:0051093;negative regulation of developmental process;0.032466382107537;18508!GO:0010468;regulation of gene expression;0.0336349202078334;18027,18508!GO:0008285;negative regulation of cell proliferation;0.0350469293638884;18508!GO:0031323;regulation of cellular metabolic process;0.0350469293638884;18027,18508!GO:0019222;regulation of metabolic process;0.036975482139595;18027,18508!GO:0006260;DNA replication;0.0375366993120028;18027!GO:0016070;RNA metabolic process;0.0375366993120028;18027,18508!GO:0003002;regionalization;0.0401063015480455;18508!GO:0045595;regulation of cell differentiation;0.0405594831052453;18508!GO:0007409;axonogenesis;0.0405594831052453;18508!GO:0048667;neuron morphogenesis during differentiation;0.041488573222029;18508!GO:0048812;neurite morphogenesis;0.041488573222029;18508!GO:0007420;brain development;0.0450598351751236;18508!GO:0000904;cellular morphogenesis during differentiation;0.0450598351751236;18508!GO:0007423;sensory organ development;0.0450598351751236;18508!GO:0010467;gene expression;0.0455415637886521;18027,18508!GO:0031175;neurite development;0.0455415637886521;18508!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0455415637886521;18508!GO:0003676;nucleic acid binding;0.0462836843525849;18027,18508!GO:0048666;neuron development;0.0488857145340564;18508! | ||
}} | }} |
Revision as of 13:02, 11 October 2012
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0021902 | commitment of a neuronal cell to a specific type of neuron in the forebrain | 0.0076699720593875 |
GO:0021877 | forebrain neuron fate commitment | 0.0076699720593875 |
GO:0009950 | dorsal/ventral axis specification | 0.0131467225601383 |
GO:0021798 | forebrain dorsal/ventral pattern formation | 0.0131467225601383 |
GO:0022612 | gland morphogenesis | 0.0131467225601383 |
GO:0021871 | forebrain regionalization | 0.0131467225601383 |
GO:0007435 | salivary gland morphogenesis | 0.0131467225601383 |
GO:0021879 | forebrain neuron differentiation | 0.0134202449153837 |
GO:0021872 | generation of neurons in the forebrain | 0.013632891141377 |
GO:0007431 | salivary gland development | 0.0145258107822522 |
GO:0021543 | pallium development | 0.0145258107822522 |
GO:0035272 | exocrine system development | 0.0145258107822522 |
GO:0042462 | eye photoreceptor cell development | 0.0145258107822522 |
GO:0045665 | negative regulation of neuron differentiation | 0.0145258107822522 |
GO:0001754 | eye photoreceptor cell differentiation | 0.0145258107822522 |
GO:0009798 | axis specification | 0.0145258107822522 |
GO:0042461 | photoreceptor cell development | 0.0145258107822522 |
GO:0003700 | transcription factor activity | 0.0145258107822522 |
GO:0021983 | pituitary gland development | 0.0145258107822522 |
GO:0021536 | diencephalon development | 0.0146346514277602 |
GO:0048663 | neuron fate commitment | 0.0146346514277602 |
GO:0046530 | photoreceptor cell differentiation | 0.0146346514277602 |
GO:0021537 | telencephalon development | 0.0153302789118187 |
GO:0001709 | cell fate determination | 0.0153302789118187 |
GO:0045664 | regulation of neuron differentiation | 0.0165553396912625 |
GO:0009953 | dorsal/ventral pattern formation | 0.0244021728980764 |
GO:0048592 | eye morphogenesis | 0.0244021728980764 |
GO:0050767 | regulation of neurogenesis | 0.0246237656104948 |
GO:0035270 | endocrine system development | 0.0253575616195415 |
GO:0030334 | regulation of cell migration | 0.0265520884597201 |
GO:0001764 | neuron migration | 0.0271757694889063 |
GO:0051270 | regulation of cell motility | 0.0282380840094746 |
GO:0040012 | regulation of locomotion | 0.0292356083395701 |
GO:0048732 | gland development | 0.032466382107537 |
GO:0043010 | camera-type eye development | 0.032466382107537 |
GO:0007411 | axon guidance | 0.032466382107537 |
GO:0045596 | negative regulation of cell differentiation | 0.032466382107537 |
GO:0006355 | regulation of transcription, DNA-dependent | 0.032466382107537 |
GO:0006351 | transcription, DNA-dependent | 0.032466382107537 |
GO:0032774 | RNA biosynthetic process | 0.032466382107537 |
GO:0003677 | DNA binding | 0.032466382107537 |
GO:0009952 | anterior/posterior pattern formation | 0.032466382107537 |
GO:0045449 | regulation of transcription | 0.032466382107537 |
GO:0030900 | forebrain development | 0.032466382107537 |
GO:0045165 | cell fate commitment | 0.032466382107537 |
GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.032466382107537 |
GO:0006350 | transcription | 0.032466382107537 |
GO:0001654 | eye development | 0.032466382107537 |
GO:0051093 | negative regulation of developmental process | 0.032466382107537 |
GO:0010468 | regulation of gene expression | 0.0336349202078334 |
GO:0008285 | negative regulation of cell proliferation | 0.0350469293638884 |
GO:0031323 | regulation of cellular metabolic process | 0.0350469293638884 |
GO:0019222 | regulation of metabolic process | 0.036975482139595 |
GO:0006260 | DNA replication | 0.0375366993120028 |
GO:0016070 | RNA metabolic process | 0.0375366993120028 |
GO:0003002 | regionalization | 0.0401063015480455 |
GO:0045595 | regulation of cell differentiation | 0.0405594831052453 |
GO:0007409 | axonogenesis | 0.0405594831052453 |
GO:0048667 | neuron morphogenesis during differentiation | 0.041488573222029 |
GO:0048812 | neurite morphogenesis | 0.041488573222029 |
GO:0007420 | brain development | 0.0450598351751236 |
GO:0000904 | cellular morphogenesis during differentiation | 0.0450598351751236 |
GO:0007423 | sensory organ development | 0.0450598351751236 |
GO:0010467 | gene expression | 0.0455415637886521 |
GO:0031175 | neurite development | 0.0455415637886521 |
GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 0.0455415637886521 |
GO:0003676 | nucleic acid binding | 0.0462836843525849 |
GO:0048666 | neuron development | 0.0488857145340564 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |