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MCL coexpression mm9:2174: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0008429;phosphatidylethanolamine binding;0.0155299915344662;17304!GO:0001786;phosphatidylserine binding;0.0155299915344662;17304!GO:0006910;phagocytosis, recognition;0.0275892129910274;17304!GO:0006911;phagocytosis, engulfment;0.0275892129910274;17304!GO:0050766;positive regulation of phagocytosis;0.0275892129910274;17304!GO:0050764;regulation of phagocytosis;0.0275892129910274;17304!GO:0045807;positive regulation of endocytosis;0.028442021337754;17304!GO:0005178;integrin binding;0.028442021337754;17304!GO:0051050;positive regulation of transport;0.0322709021062711;17304!GO:0030100;regulation of endocytosis;0.0322709021062711;17304!GO:0006909;phagocytosis;0.0322709021062711;17304!GO:0007338;single fertilization;0.0322709021062711;17304!GO:0008037;cell recognition;0.0322709021062711;17304!GO:0009566;fertilization;0.0322709021062711;17304!GO:0032403;protein complex binding;0.0322709021062711;17304!GO:0019897;extrinsic to plasma membrane;0.0322709021062711;17304!GO:0019898;extrinsic to membrane;0.0418705503834012;17304!GO:0051049;regulation of transport;0.0481014166799778;17304!
|gostat_on_MCL_coexpression=GO:0008429;phosphatidylethanolamine binding;0.0155299915344662;17304!GO:0001786;phosphatidylserine binding;0.0155299915344662;17304!GO:0006910;phagocytosis, recognition;0.0275892129910274;17304!GO:0006911;phagocytosis, engulfment;0.0275892129910274;17304!GO:0050766;positive regulation of phagocytosis;0.0275892129910274;17304!GO:0050764;regulation of phagocytosis;0.0275892129910274;17304!GO:0045807;positive regulation of endocytosis;0.028442021337754;17304!GO:0005178;integrin binding;0.028442021337754;17304!GO:0051050;positive regulation of transport;0.0322709021062711;17304!GO:0030100;regulation of endocytosis;0.0322709021062711;17304!GO:0006909;phagocytosis;0.0322709021062711;17304!GO:0007338;single fertilization;0.0322709021062711;17304!GO:0008037;cell recognition;0.0322709021062711;17304!GO:0009566;fertilization;0.0322709021062711;17304!GO:0032403;protein complex binding;0.0322709021062711;17304!GO:0019897;extrinsic to plasma membrane;0.0322709021062711;17304!GO:0019898;extrinsic to membrane;0.0418705503834012;17304!GO:0051049;regulation of transport;0.0481014166799778;17304!
}}
}}

Revision as of 13:08, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:29541470..29541495,-p2@Atp13a4
Mm9::chr2:110561630..110561647,+p2@Muc15
Mm9::chr2:110571707..110571718,+p@chr2:110571707..110571718
+
Mm9::chr7:86293901..86293915,-p1@Mfge8


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008429phosphatidylethanolamine binding0.0155299915344662
GO:0001786phosphatidylserine binding0.0155299915344662
GO:0006910phagocytosis, recognition0.0275892129910274
GO:0006911phagocytosis, engulfment0.0275892129910274
GO:0050766positive regulation of phagocytosis0.0275892129910274
GO:0050764regulation of phagocytosis0.0275892129910274
GO:0045807positive regulation of endocytosis0.028442021337754
GO:0005178integrin binding0.028442021337754
GO:0051050positive regulation of transport0.0322709021062711
GO:0030100regulation of endocytosis0.0322709021062711
GO:0006909phagocytosis0.0322709021062711
GO:0007338single fertilization0.0322709021062711
GO:0008037cell recognition0.0322709021062711
GO:0009566fertilization0.0322709021062711
GO:0032403protein complex binding0.0322709021062711
GO:0019897extrinsic to plasma membrane0.0322709021062711
GO:0019898extrinsic to membrane0.0418705503834012
GO:0051049regulation of transport0.0481014166799778



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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