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MCL coexpression mm9:3571: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0004686;elongation factor-2 kinase activity;0.00580726455925054;13631!GO:0004683;calmodulin-dependent protein kinase activity;0.0406363751156387;13631!GO:0003746;translation elongation factor activity;0.0453970148245905;13631!GO:0005524;ATP binding;0.0453970148245905;13631,26357!GO:0032559;adenyl ribonucleotide binding;0.0453970148245905;13631,26357!GO:0030554;adenyl nucleotide binding;0.0453970148245905;13631,26357!GO:0032553;ribonucleotide binding;0.0461320261320354;13631,26357!GO:0032555;purine ribonucleotide binding;0.0461320261320354;13631,26357!GO:0017076;purine nucleotide binding;0.0461320261320354;13631,26357!
|gostat_on_MCL_coexpression=GO:0004686;elongation factor-2 kinase activity;0.00580726455925054;13631!GO:0004683;calmodulin-dependent protein kinase activity;0.0406363751156387;13631!GO:0003746;translation elongation factor activity;0.0453970148245905;13631!GO:0005524;ATP binding;0.0453970148245905;13631,26357!GO:0032559;adenyl ribonucleotide binding;0.0453970148245905;13631,26357!GO:0030554;adenyl nucleotide binding;0.0453970148245905;13631,26357!GO:0032553;ribonucleotide binding;0.0461320261320354;13631,26357!GO:0032555;purine ribonucleotide binding;0.0461320261320354;13631,26357!GO:0017076;purine nucleotide binding;0.0461320261320354;13631,26357!
}}
}}

Revision as of 13:31, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:58590530..58590590,+p1@Abcg2
Mm9::chr6:58590592..58590604,+p3@Abcg2
Mm9::chr7:127987065..127987086,+p5@Eef2k


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004686elongation factor-2 kinase activity0.00580726455925054
GO:0004683calmodulin-dependent protein kinase activity0.0406363751156387
GO:0003746translation elongation factor activity0.0453970148245905
GO:0005524ATP binding0.0453970148245905
GO:0032559adenyl ribonucleotide binding0.0453970148245905
GO:0030554adenyl nucleotide binding0.0453970148245905
GO:0032553ribonucleotide binding0.0461320261320354
GO:0032555purine ribonucleotide binding0.0461320261320354
GO:0017076purine nucleotide binding0.0461320261320354



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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