MCL coexpression mm9:3587: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9 | ||
|coexpression_dpi_cluster_scores_mean=0.0233795138942943,0.162127328245005,0.107765800970212,0.161152141297147,0.142368767618997,0.0250648791905737,0.0135484959073474,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0247775284846185,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.131133418206795,-0.0168444410470322,-0.0168444410470322,0.112281455018748,0.0937693693501297,0.199125573142477,0.128173990419227,0.0553352158649563,0.196180724688581,0.31241738936529,0.012147365547433,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.049163998043678,0.0417275082550643,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0117076449710196,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.00982848997113157,0.044623866677298,0.0542246387131191,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0826907598386625,-0.0168444410470322,0.0210921388214635,-0.0168444410470322,0.0117201956748843,0.0523607471730818,0.0539713166999557,-0.0168444410470322,0.0120451933138105,0.0451893452086482,0.0217932107544072,-0.0168444410470322,0.0906418517980253,0.000551793656117157,-0.0168444410470322,0.0854806997060099,0.0944405433534004,0.0438570515705417,0.0187997852129548,0.0477865629326323,0.0037399948496942,0.0205372896312781,0.034641886890157,0.0474560132980607,-0.0062771931862165,0.0140784364613692,0.0861977826026237,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0367477676050191,0.0601609672337367,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0022309062178866,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.123736580904898,0.0164903264274236,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.125812863445349,-0.0168444410470322,0.0151336755742724,0.121152237838868,0.0748960984220703,0.045440220251276,-0.0168444410470322,0.040385548745192,0.208043002953766,-0.0168444410470322,0.0106844710602699,0.300472368911073,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0033618151784583,-0.0168444410470322,0.0708662075155425,0.0263477847818754,-0.0168444410470322,0.0532942077900587,0.00492098899947113,0.0594605601307462,0.041623531302721,-0.0168444410470322,0.0540024399226643,-0.0168444410470322,-0.0168444410470322,0.00712385006667623,0.051450410782919,0.0255435393789326,0.00060651935633294,0.0328877630277451,0.0996199863310616,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0102451741294885,0.135761500204461,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0392712379338668,-0.0168444410470322,0.0220839211026781,0.0436881515221416,0.0175598537521848,-0.0168444410470322,-0.0168444410470322,0.0462632422789088,-0.00555999521954633,0.0695671749876242,0.0406219933482295,0.0790480431983517,-0.0168444410470322,0.0616930056591323,0.205159851274141,0.249349684739813,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.127305593397133,0.104340637381061,0.309160903999742,0.223780015431908,0.440698795187522,0.614803742484851,0.456254578590469,0.462203279723221,0.270765868343401,0.285093532864848,0.27764693447093,0.0297122285729289,0.0286076163559157,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0340013952164863,0.00927246151450813,0.00308701892947967,-0.0168444410470322,0,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.102330008775794,-0.0168444410470322,0.0405346777251807,-0.0168444410470322,0.224936756294784,0.215852128421112,0.179061568631909,0.0648068270074163,0.0614620307731213,0.169712489113461,0.0076981878833187,-0.0168444410470322,0.0239957527779302,0.0254687360661185,0.078996983407399,0.18438813656368,0.111587397601985,0.049868596397585,0.179987472798587,0.224009792104999,0.232463363136367,0.00512288539484107,0.05918116188887,0.114009309220377,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0184319406415044,0.0234675857738409,0.0388143874842803,-0.0168444410470322,0.0647801525156777,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.222021209304082,0.0272561289797135,0.0557859448317607,0.116395529753502,0.105449098305128,-0.0168444410470322,-0.0168444410470322,0.00816808627821253,0.05034289621058,-0.0168444410470322,0.240212664923047,0.0899126232665977,-0.0168444410470322,0.101457100999217,0.0873688200039893,0.085750865582758,-0.0168444410470322,0.007123723002421,-0.0168444410470322,0.0112686390851483,0.00678955414062643,0.00691597279889733,0.0243412316031906,0.0216330303294718,-0.0168444410470322,-0.0168444410470322,0.0120048551555836,0.111457177393439,0.0264928341390779,0.0213108044045262,0.0274679575171618,0.00515740814078127,0.278483038271752,-0.0168444410470322,0.0430648009202881,0.0374799596665255,0.0471200092471593,-0.0168444410470322,-0.0168444410470322,0.0772203371750591,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0801800872318167,-0.0168444410470322,0.00994920652327903,0.0237866391905009,0.0106415646911355,0.132962724867966,0.0323390628930806,0.0925116308061767,0.137941510859699,0.250692277306457,0.100077906964197,0.294911256309948,0.244977833038728,0.345775679224738,0.410027876926807,0.474130726414583,0.655553766762503,0.704648850346411,0.737714943852495,0.70709984528083,0.450594073207694,0.430194984078562,0.0796876890541433,0.0098776976548952,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.00354627799598407,-0.0168444410470322,0.0582751233050513,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.212279005594855,0.047812944181193,0.114833615063743,0.0393891923601701,-0.0168444410470322,0.0479707161666961,0.03797208912087,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.014658363336457,0.0338394450526107,-0.0168444410470322,0.0363940851455323,0.0331076461431225,0.0637397296152699,0.0810016697307034,-0.0168444410470322,0.0480749611289023,0.0765611219653055,0.0413285906149502,0.0211781708595675,-0.0168444410470322,0.0794979684521735,0.030391004333906,0.0331092645414511,0.0403910620058679,0.0587522945725567,0.0744314825469866,0.0612696447517793,0.020096525148492,0.0921913139045047,0.0740143619159657,0.00747499286635957,0.0443536293160113,0.0548089602766043,-0.0168444410470322,0.0596909258375817,0.072678257261901,-0.0168444410470322,0.0430847761439452,0.0492572472536947,0.0740974771694972,0.0942792840548173,0.188060550690821,0.0084945216726313,0.0120123297854352,0.0383097778590243 | |coexpression_dpi_cluster_scores_mean=0.0233795138942943,0.162127328245005,0.107765800970212,0.161152141297147,0.142368767618997,0.0250648791905737,0.0135484959073474,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0247775284846185,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.131133418206795,-0.0168444410470322,-0.0168444410470322,0.112281455018748,0.0937693693501297,0.199125573142477,0.128173990419227,0.0553352158649563,0.196180724688581,0.31241738936529,0.012147365547433,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.049163998043678,0.0417275082550643,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0117076449710196,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.00982848997113157,0.044623866677298,0.0542246387131191,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0826907598386625,-0.0168444410470322,0.0210921388214635,-0.0168444410470322,0.0117201956748843,0.0523607471730818,0.0539713166999557,-0.0168444410470322,0.0120451933138105,0.0451893452086482,0.0217932107544072,-0.0168444410470322,0.0906418517980253,0.000551793656117157,-0.0168444410470322,0.0854806997060099,0.0944405433534004,0.0438570515705417,0.0187997852129548,0.0477865629326323,0.0037399948496942,0.0205372896312781,0.034641886890157,0.0474560132980607,-0.0062771931862165,0.0140784364613692,0.0861977826026237,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0367477676050191,0.0601609672337367,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0022309062178866,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.123736580904898,0.0164903264274236,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.125812863445349,-0.0168444410470322,0.0151336755742724,0.121152237838868,0.0748960984220703,0.045440220251276,-0.0168444410470322,0.040385548745192,0.208043002953766,-0.0168444410470322,0.0106844710602699,0.300472368911073,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0033618151784583,-0.0168444410470322,0.0708662075155425,0.0263477847818754,-0.0168444410470322,0.0532942077900587,0.00492098899947113,0.0594605601307462,0.041623531302721,-0.0168444410470322,0.0540024399226643,-0.0168444410470322,-0.0168444410470322,0.00712385006667623,0.051450410782919,0.0255435393789326,0.00060651935633294,0.0328877630277451,0.0996199863310616,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0102451741294885,0.135761500204461,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0392712379338668,-0.0168444410470322,0.0220839211026781,0.0436881515221416,0.0175598537521848,-0.0168444410470322,-0.0168444410470322,0.0462632422789088,-0.00555999521954633,0.0695671749876242,0.0406219933482295,0.0790480431983517,-0.0168444410470322,0.0616930056591323,0.205159851274141,0.249349684739813,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.127305593397133,0.104340637381061,0.309160903999742,0.223780015431908,0.440698795187522,0.614803742484851,0.456254578590469,0.462203279723221,0.270765868343401,0.285093532864848,0.27764693447093,0.0297122285729289,0.0286076163559157,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0340013952164863,0.00927246151450813,0.00308701892947967,-0.0168444410470322,0,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.102330008775794,-0.0168444410470322,0.0405346777251807,-0.0168444410470322,0.224936756294784,0.215852128421112,0.179061568631909,0.0648068270074163,0.0614620307731213,0.169712489113461,0.0076981878833187,-0.0168444410470322,0.0239957527779302,0.0254687360661185,0.078996983407399,0.18438813656368,0.111587397601985,0.049868596397585,0.179987472798587,0.224009792104999,0.232463363136367,0.00512288539484107,0.05918116188887,0.114009309220377,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0184319406415044,0.0234675857738409,0.0388143874842803,-0.0168444410470322,0.0647801525156777,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.222021209304082,0.0272561289797135,0.0557859448317607,0.116395529753502,0.105449098305128,-0.0168444410470322,-0.0168444410470322,0.00816808627821253,0.05034289621058,-0.0168444410470322,0.240212664923047,0.0899126232665977,-0.0168444410470322,0.101457100999217,0.0873688200039893,0.085750865582758,-0.0168444410470322,0.007123723002421,-0.0168444410470322,0.0112686390851483,0.00678955414062643,0.00691597279889733,0.0243412316031906,0.0216330303294718,-0.0168444410470322,-0.0168444410470322,0.0120048551555836,0.111457177393439,0.0264928341390779,0.0213108044045262,0.0274679575171618,0.00515740814078127,0.278483038271752,-0.0168444410470322,0.0430648009202881,0.0374799596665255,0.0471200092471593,-0.0168444410470322,-0.0168444410470322,0.0772203371750591,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.0801800872318167,-0.0168444410470322,0.00994920652327903,0.0237866391905009,0.0106415646911355,0.132962724867966,0.0323390628930806,0.0925116308061767,0.137941510859699,0.250692277306457,0.100077906964197,0.294911256309948,0.244977833038728,0.345775679224738,0.410027876926807,0.474130726414583,0.655553766762503,0.704648850346411,0.737714943852495,0.70709984528083,0.450594073207694,0.430194984078562,0.0796876890541433,0.0098776976548952,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.00354627799598407,-0.0168444410470322,0.0582751233050513,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.212279005594855,0.047812944181193,0.114833615063743,0.0393891923601701,-0.0168444410470322,0.0479707161666961,0.03797208912087,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,-0.0168444410470322,0.014658363336457,0.0338394450526107,-0.0168444410470322,0.0363940851455323,0.0331076461431225,0.0637397296152699,0.0810016697307034,-0.0168444410470322,0.0480749611289023,0.0765611219653055,0.0413285906149502,0.0211781708595675,-0.0168444410470322,0.0794979684521735,0.030391004333906,0.0331092645414511,0.0403910620058679,0.0587522945725567,0.0744314825469866,0.0612696447517793,0.020096525148492,0.0921913139045047,0.0740143619159657,0.00747499286635957,0.0443536293160113,0.0548089602766043,-0.0168444410470322,0.0596909258375817,0.072678257261901,-0.0168444410470322,0.0430847761439452,0.0492572472536947,0.0740974771694972,0.0942792840548173,0.188060550690821,0.0084945216726313,0.0120123297854352,0.0383097778590243 | ||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0,0,0,0,0,0.0755555083173967,0.244546866100346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0532744591890745,0,0,0,0.0501827898833331,0.0256303151729328,0,0,0,0,0.0538027986792206,0.0729756721489083,0,0,0,0,0,0,0,0,0.010595999146326,0.110544086345426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0.0917293418104957,0,0,0.110319863569628,0,0.0651189800845078,0,0,0,0,0,0.098801861608942,0,0,0,0,0,0.0514050548005424,0,0,0,0,0.0805105854221362,0,0,0,0,0,0,0,0,0,0.0240649829710694,0.0999233952154288,0,0,0,0,0,0,0,0.0788315948399074,0,0,0,0,0,0,0,0,0,0.0907988888537607,0,0,0,0.0660154575426048,0,0.0592603993571966,0.0861996515928926,0,0,0,0,0,0,0,0,0.147171275172461,0.0872055405749939,0.196086850610712,0,0.260904522905504,0.478664838509681,0.25426422794663,0.295527612683854,0,0.0849828766602549,0.0788703512227347,0,0.038840786041028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128228351593142,0,0,0,0,0.241616673082865,0.117946305307076,0,0,0.170978156452844,0,0,0,0,0,0,0,0,0.0635717028550276,0.086880916817156,0.0642538110976656,0,0,0.0586723554240733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154064780136821,0,0,0.0663147875126409,0,0,0,0,0,0,0.249268054106361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123777349320174,0.0144725896380686,0,0,0,0.111087966368681,0,0,0.0814866010703366,0,0,0,0,0,0,0,0,0,0,0,0,0.0857765460992942,0,0.066440322267935,0.100975358632432,0.216976936336518,0,0.194151474984939,0.160933381968104,0.175040580617183,0.199577904247741,0.308196887179488,0.50466514798787,0.476407420333131,0.540815226376367,0.490967412073485,0.236726748493521,0.332866488534905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141882030247812,0,0.0730404042754446,0.0338171269697068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0703429328523568,0.0978461107777356,0,0,0.0745542549075041,0.0269518943326477,0.0242538736058389,0,0.0905291472420136,0,0,0.0596387295197733,0,0.0709519923534245,0,0,0.0390607415003592,0.0352754493378881,0,0,0.0553034373508932,0,0.0486884105045233,0.0408018333703219,0,0.0625582350728301,0,0.0968441960560167,0.116152264511678,0.216063761676531,0,0,0 | |||
|gostat_on_MCL_coexpression= | |gostat_on_MCL_coexpression= | ||
}} | }} |
Revision as of 13:31, 11 October 2012
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr7:109020054..109020065,+ | p@chr7:109020054..109020065 + |
Mm9::chr7:129362921..129362930,+ | p9@2010110P09Rik |
Mm9::chr7:129362983..129363018,+ | p3@2010110P09Rik |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |