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MCL coexpression mm9:1359: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0030326;embryonic limb morphogenesis;0.00065475994242359;22418,14119!GO:0035113;embryonic appendage morphogenesis;0.00065475994242359;22418,14119!GO:0035107;appendage morphogenesis;0.00065475994242359;22418,14119!GO:0035108;limb morphogenesis;0.00065475994242359;22418,14119!GO:0048736;appendage development;0.00065475994242359;22418,14119!GO:0060173;limb development;0.00065475994242359;22418,14119!GO:0048598;embryonic morphogenesis;0.00364497440348794;22418,14119!GO:0008449;N-acetylglucosamine-6-sulfatase activity;0.00388934532256473;240725!GO:0004065;arylsulfatase activity;0.00388934532256473;240725!GO:0005578;proteinaceous extracellular matrix;0.004908708499464;22418,14119!GO:0001527;microfibril;0.00530307154345109;14119!GO:0043205;fibril;0.00583305907228608;14119!GO:0005615;extracellular space;0.00685678692274165;22418,14119,240725!GO:0044421;extracellular region part;0.00758169276701373;22418,14119,240725!GO:0009790;embryonic development;0.00801825903984703;22418,14119!GO:0008484;sulfuric ester hydrolase activity;0.00801825903984703;240725!GO:0007223;Wnt receptor signaling pathway, calcium modulating pathway;0.0137143189205113;22418!GO:0032502;developmental process;0.0142864295074839;22418,14119,240725!GO:0005509;calcium ion binding;0.0198651830124596;14119,240725!GO:0007254;JNK cascade;0.0250313368902236;22418!GO:0031098;stress-activated protein kinase signaling pathway;0.0254983854132012;22418!GO:0006790;sulfur metabolic process;0.0290711091763703;240725!GO:0005201;extracellular matrix structural constituent;0.0290711091763703;14119!GO:0030324;lung development;0.0290711091763703;22418!GO:0009653;anatomical structure morphogenesis;0.0290711091763703;22418,14119!GO:0030323;respiratory tube development;0.0290711091763703;22418!GO:0044420;extracellular matrix part;0.0395641908496913;14119!GO:0000165;MAPKKK cascade;0.0483697919197377;22418!GO:0016055;Wnt receptor signaling pathway;0.0483697919197377;22418!
|gostat_on_MCL_coexpression=GO:0030326;embryonic limb morphogenesis;0.00065475994242359;22418,14119!GO:0035113;embryonic appendage morphogenesis;0.00065475994242359;22418,14119!GO:0035107;appendage morphogenesis;0.00065475994242359;22418,14119!GO:0035108;limb morphogenesis;0.00065475994242359;22418,14119!GO:0048736;appendage development;0.00065475994242359;22418,14119!GO:0060173;limb development;0.00065475994242359;22418,14119!GO:0048598;embryonic morphogenesis;0.00364497440348794;22418,14119!GO:0008449;N-acetylglucosamine-6-sulfatase activity;0.00388934532256473;240725!GO:0004065;arylsulfatase activity;0.00388934532256473;240725!GO:0005578;proteinaceous extracellular matrix;0.004908708499464;22418,14119!GO:0001527;microfibril;0.00530307154345109;14119!GO:0043205;fibril;0.00583305907228608;14119!GO:0005615;extracellular space;0.00685678692274165;22418,14119,240725!GO:0044421;extracellular region part;0.00758169276701373;22418,14119,240725!GO:0009790;embryonic development;0.00801825903984703;22418,14119!GO:0008484;sulfuric ester hydrolase activity;0.00801825903984703;240725!GO:0007223;Wnt receptor signaling pathway, calcium modulating pathway;0.0137143189205113;22418!GO:0032502;developmental process;0.0142864295074839;22418,14119,240725!GO:0005509;calcium ion binding;0.0198651830124596;14119,240725!GO:0007254;JNK cascade;0.0250313368902236;22418!GO:0031098;stress-activated protein kinase signaling pathway;0.0254983854132012;22418!GO:0006790;sulfur metabolic process;0.0290711091763703;240725!GO:0005201;extracellular matrix structural constituent;0.0290711091763703;14119!GO:0030324;lung development;0.0290711091763703;22418!GO:0009653;anatomical structure morphogenesis;0.0290711091763703;22418,14119!GO:0030323;respiratory tube development;0.0290711091763703;22418!GO:0044420;extracellular matrix part;0.0395641908496913;14119!GO:0000165;MAPKKK cascade;0.0483697919197377;22418!GO:0016055;Wnt receptor signaling pathway;0.0483697919197377;22418!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000468!5.25e-10!333
}}
}}

Revision as of 16:46, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:29323284..29323305,+p11@Wnt5a
Mm9::chr18:58369710..58369721,-p1@Fbn2
p1@LOC100047082
Mm9::chr1:12682486..12682500,+p7@Sulf1
Mm9::chr1:12682514..12682566,+p2@Sulf1
Mm9::chr1:12682570..12682620,+p1@Sulf1
Mm9::chr1:12682623..12682635,+p6@Sulf1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0030326embryonic limb morphogenesis0.00065475994242359
GO:0035113embryonic appendage morphogenesis0.00065475994242359
GO:0035107appendage morphogenesis0.00065475994242359
GO:0035108limb morphogenesis0.00065475994242359
GO:0048736appendage development0.00065475994242359
GO:0060173limb development0.00065475994242359
GO:0048598embryonic morphogenesis0.00364497440348794
GO:0008449N-acetylglucosamine-6-sulfatase activity0.00388934532256473
GO:0004065arylsulfatase activity0.00388934532256473
GO:0005578proteinaceous extracellular matrix0.004908708499464
GO:0001527microfibril0.00530307154345109
GO:0043205fibril0.00583305907228608
GO:0005615extracellular space0.00685678692274165
GO:0044421extracellular region part0.00758169276701373
GO:0009790embryonic development0.00801825903984703
GO:0008484sulfuric ester hydrolase activity0.00801825903984703
GO:0007223Wnt receptor signaling pathway, calcium modulating pathway0.0137143189205113
GO:0032502developmental process0.0142864295074839
GO:0005509calcium ion binding0.0198651830124596
GO:0007254JNK cascade0.0250313368902236
GO:0031098stress-activated protein kinase signaling pathway0.0254983854132012
GO:0006790sulfur metabolic process0.0290711091763703
GO:0005201extracellular matrix structural constituent0.0290711091763703
GO:0030324lung development0.0290711091763703
GO:0009653anatomical structure morphogenesis0.0290711091763703
GO:0030323respiratory tube development0.0290711091763703
GO:0044420extracellular matrix part0.0395641908496913
GO:0000165MAPKKK cascade0.0483697919197377
GO:0016055Wnt receptor signaling pathway0.0483697919197377



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
multi-cellular organism5.25e-10333


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}