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MCL coexpression mm9:2981: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0000278;mitotic cell cycle;0.00599520480867698;12532,105837!GO:0022403;cell cycle phase;0.00599520480867698;12532,105837!GO:0007089;traversing start control point of mitotic cell cycle;0.00602607644021278;105837!GO:0051318;G1 phase;0.00723069740807605;105837!GO:0000080;G1 phase of mitotic cell cycle;0.00723069740807605;105837!GO:0022402;cell cycle process;0.00836868848028235;12532,105837!GO:0007049;cell cycle;0.0114409464611117;12532,105837!GO:0007346;regulation of progression through mitotic cell cycle;0.0150581748206375;105837!GO:0051325;interphase;0.0246811925482239;105837!GO:0051329;interphase of mitotic cell cycle;0.0246811925482239;105837!GO:0004725;protein tyrosine phosphatase activity;0.0470058335467182;12532!
|gostat_on_MCL_coexpression=GO:0000278;mitotic cell cycle;0.00599520480867698;12532,105837!GO:0022403;cell cycle phase;0.00599520480867698;12532,105837!GO:0007089;traversing start control point of mitotic cell cycle;0.00602607644021278;105837!GO:0051318;G1 phase;0.00723069740807605;105837!GO:0000080;G1 phase of mitotic cell cycle;0.00723069740807605;105837!GO:0022402;cell cycle process;0.00836868848028235;12532,105837!GO:0007049;cell cycle;0.0114409464611117;12532,105837!GO:0007346;regulation of progression through mitotic cell cycle;0.0150581748206375;105837!GO:0051325;interphase;0.0246811925482239;105837!GO:0051329;interphase of mitotic cell cycle;0.0246811925482239;105837!GO:0004725;protein tyrosine phosphatase activity;0.0470058335467182;12532!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}
}}

Revision as of 19:20, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:55389109..55389129,+p2@Mtbp
Mm9::chr18:34911156..34911195,-p1@Cdc25c
Mm9::chr8:98157400..98157486,+p1@Gins3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000278mitotic cell cycle0.00599520480867698
GO:0022403cell cycle phase0.00599520480867698
GO:0007089traversing start control point of mitotic cell cycle0.00602607644021278
GO:0051318G1 phase0.00723069740807605
GO:0000080G1 phase of mitotic cell cycle0.00723069740807605
GO:0022402cell cycle process0.00836868848028235
GO:0007049cell cycle0.0114409464611117
GO:0007346regulation of progression through mitotic cell cycle0.0150581748206375
GO:0051325interphase0.0246811925482239
GO:0051329interphase of mitotic cell cycle0.0246811925482239
GO:0004725protein tyrosine phosphatase activity0.0470058335467182



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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