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MCL coexpression mm9:3152: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0.130004032382152,0.162862766291676,0,0.301418832116713,0,0,0.0527413783866199,0,0,0,0,0,0,0,0,0,0,0,0,0.0682179984609265,0,0,0.120568945209029,0.227431058621176,0,0,0.15562217221269,0.245535782973247,1.08240207845901,0.0869754197833955,0,0,0,0,0.124657208673588,0.0806875710728457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16338070954688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.997429939778249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0609639314262262,0,0,0,0,0,0,0,0,0,0,0.149700657682213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.774975232615945,0.253665468807546,0,0,0,0,0,0.0756292965920817,0.168653336497203,0,0.0973736644748266,0.0788034163803455,0,0,0.156026744954718,0.0788703512227347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26755667395766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0650059127791652,0.221007708205663,0.132937195692582,0.0660055475634404,0.111087966368681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411629065605499,0.147815532899656,0,0.280907326443055,0.234544307802584,0.413207670179413,0.170491067385816,0.20160414567784,0.205691101905468,0.226821830940387,0.205463431268847,0.316397440896801,0.270889894994264,0.199860588049263,0,0,0,0,0,0,0,0,0.176546191435317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0553034373508932,0,0,0,0,0,0,0,0,0,0,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!1.76e-16!31;UBERON:0000344!2.58e-14!15;UBERON:0002370!4.62e-13!23;UBERON:0000974!4.62e-13!23;UBERON:0004807!4.62e-13!23;UBERON:0005058!4.62e-13!23;UBERON:0003351!4.62e-13!23;UBERON:0009113!4.62e-13!23;UBERON:0003295!4.62e-13!23;UBERON:0009722!4.62e-13!23;UBERON:0005562!4.62e-13!23;UBERON:0007690!4.62e-13!23;UBERON:0006562!2.21e-12!24;UBERON:0003408!2.21e-12!24;UBERON:0001557!2.21e-12!24;UBERON:0001042!2.21e-12!24;UBERON:0008814!2.21e-12!24;UBERON:0009145!2.21e-12!24;UBERON:0001007!1.45e-11!116;UBERON:0001555!1.45e-11!116;UBERON:0007026!1.45e-11!116;UBERON:0001242!2.99e-11!13;UBERON:0000060!2.99e-11!13;UBERON:0001262!2.99e-11!13;UBERON:0004786!2.99e-11!13;UBERON:0004119!3.12e-11!118;UBERON:0000925!3.12e-11!118;UBERON:0006595!3.12e-11!118;UBERON:0000072!1.20e-10!27;UBERON:0000064!1.24e-10!99;UBERON:0004921!5.82e-10!114;UBERON:0004177!1.08e-09!29;UBERON:0005057!1.08e-09!29;UBERON:0005409!2.37e-09!47;UBERON:0000063!5.85e-09!35;UBERON:0002108!1.90e-08!4;UBERON:0007811!2.49e-08!36;UBERON:0004923!5.08e-08!24;UBERON:0003929!5.45e-08!55;UBERON:0000153!1.65e-07!43;UBERON:0000077!1.69e-07!35;UBERON:0000331!5.40e-07!3;UBERON:0002116!5.40e-07!3;UBERON:0001204!5.40e-07!3;UBERON:0001168!5.40e-07!3
}}
}}

Revision as of 19:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr18:60518260..60518264,+p@chr18:60518260..60518264
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Mm9::chr19:7636218..7636236,+p@chr19:7636218..7636236
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Mm9::chr2:5773891..5773903,+p@chr2:5773891..5773903
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine1.76e-1631
mucosa2.58e-1415
thymus4.62e-1323
neck4.62e-1323
respiratory system epithelium4.62e-1323
hemolymphoid system gland4.62e-1323
pharyngeal epithelium4.62e-1323
thymic region4.62e-1323
pharyngeal gland4.62e-1323
entire pharyngeal arch endoderm4.62e-1323
thymus primordium4.62e-1323
early pharyngeal endoderm4.62e-1323
pharynx2.21e-1224
gland of gut2.21e-1224
upper respiratory tract2.21e-1224
chordate pharynx2.21e-1224
pharyngeal arch system2.21e-1224
pharyngeal region of foregut2.21e-1224
digestive system1.45e-11116
digestive tract1.45e-11116
primitive gut1.45e-11116
intestinal mucosa2.99e-1113
anatomical wall2.99e-1113
wall of intestine2.99e-1113
gastrointestinal system mucosa2.99e-1113
endoderm-derived structure3.12e-11118
endoderm3.12e-11118
presumptive endoderm3.12e-11118
segment of respiratory tract1.20e-1027
organ part1.24e-1099
subdivision of digestive tract5.82e-10114
hemopoietic organ1.08e-0929
immune organ1.08e-0929
gastrointestinal system2.37e-0947
organ segment5.85e-0935
small intestine1.90e-084
craniocervical region2.49e-0836
organ component layer5.08e-0824
gut epithelium5.45e-0855
anterior region of body1.65e-0743
mixed endoderm/mesoderm-derived structure1.69e-0735
ileal mucosa5.40e-073
ileum5.40e-073
mucosa of small intestine5.40e-073
wall of small intestine5.40e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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