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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127160916153114,0.396088451455072,0.362859104398798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157169655903251,0.158173160405417,0.199560385736905,0.107200755467032,0,0,0,0,0,0,0,0.480461794765851,0.493592419892616,0.548429419791112,0,0,0,0,0,0.113809739605487,0,0.702766026850616,0.640992794163642,0.716545808250448,0.646189154578081,0.677129075106805,0.595471880939361,0.648402653351375,0.921881489357994,0.322458878535173,0.27733671884564,0.348081283300519,0.412063108447055,0.375172291542432,0.182104477852721,0.19266946376396,0.327466262382121,0.31588384183826,0.709676937983013,0.79711181727466,0.55745814449709,0.0317017435824471,0.0887435625870942,0.557360455154078,0,0,0,0,0,0.107511441879825,0.267676534152945,0.181721285172594,0.232151882621976,0,0,0,0,0.0851089148667383,0,0,0.0469568706916304,0,0.0601091194109999,0,0,0,0,0.0482820047261801,0.0514097768499148,0,0.361991016562469,0,0.171814341822305,0.158869788505911,0.171689969376673,0,0.20018311764962,0,0,0,0,0,0.278466377096388,0.668386366133206,1.09462993476594,0.513179785826585,0.35766376392443,0.543255344169442,0.555802799967908,0,0.0509235292940968,0,0.0829439327499637,0.0531247310291112,0,0,0.162000848159969,0.127163941277894,0.0990682757404326,0.107584785071413,0.0999233952154288,0,0,0.0703892716151147,0.0860734338295156,0.106546909924599,0.310641597335513,0.208803048664568,0,0,0,0,0.209884093124803,0.167037204238477,0.18757322340964,0.233055588600724,0.25213838724749,0.318036146903788,0.419581997567543,0.316618912068342,0.311941961198173,0.33282590988763,0.394014921200439,0.32939042075041,0.273510528085389,0.364982391275189,0.186624607472909,0.212419302822567,0.439234518038923,0,0,0.0839639919176933,0.0906941294286938,0,0,0,0,0,0,0,0.0788034163803455,0.0773548534010084,0,0,0,0,0.0893741091821246,0,0,0,0,0,0,0.0633328814307688,0,0,0,0,0,0,0,0.098514232005992,0,0,0,0,0,0.117946305307076,0,0,0.170978156452844,0.191523550257637,0.0753613107413788,0.122520581474887,0,0,0,0,0.0774164737207147,0.168174863922987,0,0.0642538110976656,0,0.0691813633419548,0.110353348438991,0,0,0.29743845502323,0.10582914506561,0.29298744963777,0.260186342962283,0,0.177519720662585,0,0,0.0847275925579778,0,0,0,0,0.111348509539896,0,0.293133511567635,0.0576433181427177,0,0.0655375003561515,0.0663147875126409,0,0,0,0,0,0,0.0998284739419172,0,0.1324189587654,0,0,0,0,0,0.0999282245587464,0,0.0709019855629759,0.132495872273197,0.174247988899791,0.206537122113033,0.0915514965999916,0,0,0.365317607613525,0.360160685725083,0.221007708205663,0.132937195692582,0.0660055475634404,0,0.136990127740213,0,0,0,0,0,0,0,0,0,0,0,0.148182634048186,0.155949496944283,0.151730312771305,0.0857765460992942,0.147550511820338,0.174908581800133,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0492938041367021,0,0,0.031895734489288,0,0,0,0,0.280332823170933,0,0,0,0.0767094571656325,0,0.0730404042754446,0.154952218286625,0,0.513085342652956,0.164449590503707,0.517404685814234,0.509752285554761,0.374778587894724,0.244374584202533,0.224020645200257,0.278900414858752,0.280187789078248,0.308675506925909,0,0,0.0684580848992459,0.17208118264908,0.0826465040380816,0.135986724295729,0.324536297029726,0.307533536701661,0.215330413983256,0.245041507634362,0.245620709720879,0.328737911309532,0.307508142830053,0.292339661913287,0.37629425521785,0.385406250813582,0.334221111983301,0.333941810982823,0.422974330955965,0.158843797677303,0.307198081843346,0.275859125630462,0.234342257396434,0.389779719344973,0.328239416855966,0.266266062213982,0.321716015203304,0.252661106676919,0.319404424536742,0.193442483447008,0.262556714121618,0.318803782272219,0.259704250749409,0.209447282040344,0.24837215409455,0.476901826078693,0.421195968848069,0.216063761676531,0.196967476487388,0.366151744795933,0.0905641158318875
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!3.52e-15!23;CL:0000337!3.52e-15!23;CL:0000540!2.83e-08!33;CL:0000047!2.83e-08!33;CL:0000031!2.83e-08!33;CL:0000404!2.83e-08!33;CL:0002319!3.06e-07!43;CL:0000221!8.21e-07!44;CL:0000133!8.21e-07!44
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002020!2.36e-19!34;UBERON:0000073!3.07e-19!54;UBERON:0001049!7.05e-18!52;UBERON:0005068!7.05e-18!52;UBERON:0006241!7.05e-18!52;UBERON:0007135!7.05e-18!52;UBERON:0010314!1.43e-16!92;UBERON:0010371!5.24e-16!73;UBERON:0004121!1.31e-15!95;UBERON:0000924!1.31e-15!95;UBERON:0006601!1.31e-15!95;UBERON:0003528!1.93e-15!29;UBERON:0002791!1.93e-15!29;UBERON:0001893!1.93e-15!29;UBERON:0001017!2.37e-15!73;UBERON:0002346!2.80e-15!64;UBERON:0003075!2.80e-15!64;UBERON:0007284!2.80e-15!64;UBERON:0001016!2.90e-15!75;UBERON:0003080!1.35e-14!40;UBERON:0000955!1.37e-14!47;UBERON:0006238!1.37e-14!47;UBERON:0002780!3.17e-14!39;UBERON:0001890!3.17e-14!39;UBERON:0006240!3.17e-14!39;UBERON:0002616!3.47e-14!46;UBERON:0003056!3.76e-13!49;UBERON:0000956!1.63e-11!21;UBERON:0001869!1.63e-11!21;UBERON:0000203!1.63e-11!21;UBERON:0000025!3.89e-10!114;UBERON:0004111!3.94e-09!122;UBERON:0002619!1.22e-08!17
}}
}}

Revision as of 20:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr8:120807488..120807502,+p5@Cdh13
Mm9::chr8:120807507..120807518,+p8@Cdh13
Mm9::chr8:120807523..120807533,+p7@Cdh13


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)3.52e-1523
neuroblast (sensu Vertebrata)3.52e-1523
neuron2.83e-0833
neuronal stem cell2.83e-0833
neuroblast2.83e-0833
electrically signaling cell2.83e-0833
neural cell3.06e-0743
ectodermal cell8.21e-0744
neurectodermal cell8.21e-0744

Uber Anatomy
Ontology termp-valuen
gray matter2.36e-1934
regional part of nervous system3.07e-1954
neural tube7.05e-1852
neural rod7.05e-1852
future spinal cord7.05e-1852
neural keel7.05e-1852
structure with developmental contribution from neural crest1.43e-1692
ecto-epithelium5.24e-1673
ectoderm-derived structure1.31e-1595
ectoderm1.31e-1595
presumptive ectoderm1.31e-1595
brain grey matter1.93e-1529
regional part of telencephalon1.93e-1529
telencephalon1.93e-1529
central nervous system2.37e-1573
neurectoderm2.80e-1564
neural plate2.80e-1564
presumptive neural plate2.80e-1564
nervous system2.90e-1575
anterior neural tube1.35e-1440
brain1.37e-1447
future brain1.37e-1447
regional part of forebrain3.17e-1439
forebrain3.17e-1439
future forebrain3.17e-1439
regional part of brain3.47e-1446
pre-chordal neural plate3.76e-1349
cerebral cortex1.63e-1121
cerebral hemisphere1.63e-1121
pallium1.63e-1121
tube3.89e-10114
anatomical conduit3.94e-09122
regional part of cerebral cortex1.22e-0817


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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