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Coexpression cluster:C154: Difference between revisions

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|gostat_on_coexpression_clusters=GO:0006826!iron ion transport!0.031978858554635!4891;53940
|gostat_on_coexpression_clusters=GO:0006826!iron ion transport!0.031978858554635!4891;53940
|id=C154
|id=C154
|ontology_enrichment_celltype=CL:0000187!6.43e-13!54;CL:0000680!6.88e-13!57;CL:0000056!6.88e-13!57;CL:0000355!6.88e-13!57;CL:0000393!9.51e-13!60;CL:0000211!9.51e-13!60;CL:0000183!5.90e-12!59;CL:0000192!2.64e-09!42;CL:0000514!2.64e-09!42;CL:0000055!1.86e-08!180
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_disease=DOID:299!2.15e-09!25
|ontology_enrichment_uberon=UBERON:0000481!2.22e-26!347;UBERON:0003104!4.85e-23!238;UBERON:0009142!4.85e-23!238;UBERON:0005256!2.42e-20!143;UBERON:0002100!8.74e-19!216;UBERON:0001007!4.40e-16!155;UBERON:0001555!4.40e-16!155;UBERON:0007026!4.40e-16!155;UBERON:0004119!1.68e-15!169;UBERON:0000925!1.68e-15!169;UBERON:0006595!1.68e-15!169;UBERON:0002385!7.85e-14!63;UBERON:0001015!7.85e-14!63;UBERON:0000383!7.85e-14!63;UBERON:0000914!7.88e-14!83;UBERON:0002329!7.88e-14!83;UBERON:0003077!7.88e-14!83;UBERON:0003059!7.88e-14!83;UBERON:0007282!7.88e-14!83;UBERON:0009618!7.88e-14!83;UBERON:0007285!7.88e-14!83;UBERON:0000477!1.09e-13!286;UBERON:0000922!1.77e-13!612;UBERON:0001134!6.18e-13!61;UBERON:0002036!6.18e-13!61;UBERON:0003082!6.18e-13!61;UBERON:0004921!9.19e-13!129;UBERON:0004185!9.19e-13!129;UBERON:0000490!9.85e-13!138;UBERON:0004290!1.04e-12!70;UBERON:0000483!1.17e-12!309;UBERON:0002050!1.54e-12!605;UBERON:0005423!1.54e-12!605;UBERON:0000119!3.20e-12!312;UBERON:0000923!3.58e-12!604;UBERON:0005291!3.58e-12!604;UBERON:0006598!3.58e-12!604;UBERON:0002532!3.58e-12!604;UBERON:0000468!4.21e-12!659;UBERON:0000475!5.20e-12!365;UBERON:0000926!8.52e-12!448;UBERON:0004120!8.52e-12!448;UBERON:0006603!8.52e-12!448;UBERON:0000077!1.45e-11!130;UBERON:0000480!5.51e-11!626;UBERON:0004111!8.27e-11!241;UBERON:0000467!1.00e-10!625;UBERON:0001048!1.61e-10!168;UBERON:0003914!1.95e-10!118;UBERON:0005911!2.83e-10!82;UBERON:0000486!5.62e-10!82;UBERON:0000025!5.10e-09!194;UBERON:0000062!6.51e-09!511;UBERON:0003929!7.07e-09!54;UBERON:0000948!7.43e-08!24;UBERON:0005498!7.43e-08!24;UBERON:0004140!7.43e-08!24;UBERON:0009881!7.43e-08!24;UBERON:0004141!7.43e-08!24;UBERON:0003084!7.43e-08!24;UBERON:0007005!7.43e-08!24;UBERON:0004139!7.43e-08!24;UBERON:0004291!7.43e-08!24;UBERON:0007100!8.32e-08!27;UBERON:0007499!1.18e-07!25;UBERON:0003103!1.39e-07!69;UBERON:0009856!1.54e-07!26;UBERON:0005177!1.64e-07!107;UBERON:0009497!1.75e-07!25;UBERON:0000015!1.75e-07!25;UBERON:0002423!1.75e-07!25;UBERON:0006235!1.75e-07!25;UBERON:0004161!1.75e-07!25;UBERON:0005156!2.46e-07!59;UBERON:0000990!2.46e-07!59;UBERON:0000466!3.28e-07!126;UBERON:0001041!3.36e-07!98;UBERON:0008835!8.60e-07!22;UBERON:0003894!8.60e-07!22
|ontology_enrichment_uberon=
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92046,0.616502,0.928818,0.565273,0.658266,0.999999,0.979013,0.769162,0.851564,0.876831,0.996836,0.958412,0.887566,0.379401,0.418913,0.824979,0.989764,0.799755,0.94658,0.8275,0.611843,0.979188,0.999964,0.70315,0.920096,0.241775,0.810159,0.858425,0.997762,0.994737,0.535069,0.712614,0.999351,0.279129,0.798177,0.986133,0.96255,0.994563,0.997914,0.999808,0.860474,0.541469,0.850323,0.905717,0.945255,0.703971,0.978629,0.722146,0.942261,0.42466,1,0.999757,0.420997,0.934828,0.103682,0.954967,0.975497,1,0.888519,0.835385,0.997862,0.902084,0.924865,0.999123,0.515571,0.718405,0.887251,0.738305,0.993031,0.972973,1,1,0.749746,0.688532,0.417982,0.728684,0.615561,0.846606,0.886343,0.852078,0.555843,0.515699,0.929286,0.932532,0.910841,0.944982,0.415584,0.994827,0.817999,0.607523,0.938325,0.698991,0.550657,0.586256,0.816817,0.886742,0.861949,0.946279,0.999661,0.858901,0.901681,0.99989,0.981022,0.99646,0.970969,0.997926,0.856031,0.90881,0.795378,0.935818,1,0.986213,0.521055,0.871012,0.899614,0.978808,0.93982,0.891842,0.868394,0.818388,0.898284,0.793841,0.985987,0.955615,0.709859,0.846598,0.960906,0.991858,0.819878,0.934887,0.981861,0.923679,0.882606,0.969531,0.828854,0.996315,0.899952,0.995161,0.911974,0.935807,0.248744,0.991321,0.865829,0.979333,0.2401,0.884165,0.607663,0.995567,0.949668,0.517274,0.999974,0.658344,0.999687,0.732447,0.802984,0.987344,1,1,0.743296,0.993917,0.994479,0.806798,0.775432,0.961632,0.0157099,0.972907,0.914393,0.996575,0.981094,0.964003,0.99807,0.98379,0.833029,0.908114,0.413508,0.96787,0.992414,0.982415,0.941754,0.999536,0.955321,0.999068,0.973987,0.802587,0.999058,0.415209,0.871811,0.999999,1,0.999236,0.956351,0.999575,0.997245,0.999626,0.985831,0.995518,0.991725,0.986307,0.961097,0.947656,0.134642,0.99919,0.945157,0.999244,0.559109,0.860132,0.950053,0.991828,1,0.380212,0.999988,0.9998,0.476865,0.999997,0.99956,0.994614,1,0.655722,1,0.0679718,1,0.99999,1,0.0858597,0.719515,0.926311,0.848455,0.961786,0.991926,0.918891,0.996885,0.438553,0.996437,0.755149,0.976253,0.994348,0.883205,0.648168,0.269492,0.696462,0.690644,0.982786,0.73722,0.937119,0.921735,0.999997,0.972498,0.91657,0.971319,0.999653,0.675745,0.993862,0.99872,0.948083,0.909729,0.999999,0.999835,0.708935,0.994827,0.988708,0.947691,0.999998,0.98437,0.149616,0.931025,0.647431,0.999998,0.803611,0.908962,0.960105,0.829369,0.997802,0.999197,0.997167,0.977715,0.912062,0.480421,0.98614,0.815766,0.987237,0.502911,0.132672,0.968135,0.74125,0.929701,0.28029,0.089215,0.997555,0.995661,0.789485,0.94043,0.954832,0.99749,0.956089,0.773319,0.445201,0.391706,0.907803,0.903957,0.498888,0.958841,0.981633,0.998502,0.819221,0.892437,0.969693,0.999996,0.924199,0.943224,0.785493,0.983493,0.993653,0.998356,0.99133,0.627061,0.906178,0.789454,0.760448,0.965713,0.999347,0.0200351,0.997271,0.722036,0.999125,0.510341,0.990526,0.866524,0.990772,0.927156,0.950253,0.537728,0.614684,0.718866,0.887133,0.964312,0.092613,0.762298,0.699863,0.892503,0.667228,0.959615,0.434444,0.931145,0.969574,0.884553,0.9907,0.910609,0.98083,0.650455,0.85822,0.921073,0.999335,0.805215,0.897907,0.955327,0.769372,0.964055,0.998871,0.910859,0.946466,0.716229,0.714098,0.706539,0.701547,0.866713,0.994576,0.985356,0.548533,0.963463,0.155112,0.861021,0.992986,0.995121,0.728565,0.991759,0.971752,0.98821,0.691056,0.918146,0.781393,0.844043,0.966538,0.766004,0.463925,0.862423,0.514481,0.815526,0.966161,0.955944,0.868084,0.991244,0.340687,0.924984,0.195014,0.676162,0.987535,0.994728,0.9024,0.992608,0.778711,0.925344,0.935599,0.955215,0.921625,0.940015,0.946907,0.365606,0.870685,0.981013,0.937831,0.318519,0.930289,0.9902,0.87817,0.972055,0.339403,0.896607,0.95247,0.479412,0.957401,0.978236,0.919752,0.719194,0.915927,0.424611,0.990926,0.986545,0.965758,0.767067,0.902723,0.697942,0.723874,0.890261,0.989592,0.963772,0.998042,0.948507,0.958215,0.966656,0.405585,0.604324,0.870635,0.564291,0.950482,0.785255,0.870442,0.972699,0.930253,0.975293,0.881402,0.649479,0.787427,0.820399,0.894384,0.913957,0.707335,0.230107,0.983228,0.720658,0.946853,0.576698,0.618753,0.811595,0.923008,0.138917,0.749724,0.995321,0.739539,0.899047,0.985178,0.914439,0.338456,0.99608,0.999788,0.964515,0.996002,0.949014,0.982927,0.929801,0.259827,0.935096,0.765492,0.774093,0.853831,0.712887,0.799365,0.999493,0.952846,0.989479,0.557552,0.956452,0.940475,0.550518,0.999607,0.993592,0.961716,0.980802,0.793247,0.957003,0.877734,0.9907,0.83251,0.972265,0.71947,0.964001,0.998322,0.916621,0.953687,0.89699,0.934738,0.997057,0.903953,0.99516,0.926189,0.951278,0.998755,0.994211,0.970566,0.984178
}}
}}

Revision as of 11:24, 19 October 2012


Full id: C154_adenocarcinoma_Mesenchymal_Cardiac_small_sacrococcigeal_Smooth_Prostate



Phase1 CAGE Peaks

Hg19::chr10:118885954..118885990,-p16@KIAA1598
Hg19::chr10:14504151..14504156,-p41@FRMD4A
Hg19::chr10:20659504..20659530,+p@chr10:20659504..20659530
+
Hg19::chr10:78078088..78078092,+p6@C10orf11
Hg19::chr10:78078781..78078813,+p@chr10:78078781..78078813
+
Hg19::chr11:1853010..1853019,+p@chr11:1853010..1853019
+
Hg19::chr11:1853029..1853045,+p9@SYT8
Hg19::chr11:32418017..32418035,-p@chr11:32418017..32418035
-
Hg19::chr11:45274072..45274078,-p@chr11:45274072..45274078
-
Hg19::chr11:45274102..45274110,-p@chr11:45274102..45274110
-
Hg19::chr11:64068136..64068191,+p2@C11orf20
Hg19::chr11:64068193..64068201,+p4@C11orf20
Hg19::chr11:74203338..74203363,+p@chr11:74203338..74203363
+
Hg19::chr12:116356689..116356694,-p@chr12:116356689..116356694
-
Hg19::chr12:127841607..127841612,-p@chr12:127841607..127841612
-
Hg19::chr12:130554803..130554831,+p1@ENST00000535487
Hg19::chr12:4067801..4067810,-p@chr12:4067801..4067810
-
Hg19::chr12:51422113..51422122,-p13@SLC11A2
Hg19::chr13:23993097..23993108,+p1@SACS-AS1
Hg19::chr14:46185170..46185184,-p1@ENST00000555442
Hg19::chr15:66874502..66874507,+p1@ENST00000558797
p1@uc002aqe.2
Hg19::chr15:79550146..79550153,+p@chr15:79550146..79550153
+
Hg19::chr16:49601912..49601949,-p@chr16:49601912..49601949
-
Hg19::chr16:68415381..68415397,-p@chr16:68415381..68415397
-
Hg19::chr16:68415402..68415427,-p@chr16:68415402..68415427
-
Hg19::chr17:41319358..41319362,-p@chr17:41319358..41319362
-
Hg19::chr17:7945494..7945505,+p@chr17:7945494..7945505
+
Hg19::chr17:7945517..7945524,+p@chr17:7945517..7945524
+
Hg19::chr18:19664761..19664775,+p@chr18:19664761..19664775
+
Hg19::chr18:55562609..55562633,-p@chr18:55562609..55562633
-
Hg19::chr19:14911558..14911572,-p@chr19:14911558..14911572
-
Hg19::chr19:35298485..35298515,-p@chr19:35298485..35298515
-
Hg19::chr19:40729176..40729179,-p@chr19:40729176..40729179
-
Hg19::chr19:6573965..6573973,-p@chr19:6573965..6573973
-
Hg19::chr1:171183141..171183168,-p@chr1:171183141..171183168
-
Hg19::chr1:20509818..20509830,+p@chr1:20509818..20509830
+
Hg19::chr1:210730983..210730994,-p@chr1:210730983..210730994
-
Hg19::chr1:229972086..229972113,-p@chr1:229972086..229972113
-
Hg19::chr1:53925063..53925076,+p2@DMRTB1
Hg19::chr1:53925386..53925397,+p4@DMRTB1
Hg19::chr1:53926206..53926223,+p@chr1:53926206..53926223
+
Hg19::chr1:66713214..66713221,+p@chr1:66713214..66713221
+
Hg19::chr1:6784296..6784306,-p@chr1:6784296..6784306
-
Hg19::chr21:45232916..45232945,-p5@LOC284837
Hg19::chr22:32009392..32009402,+p14@SFI1
Hg19::chr22:32009407..32009413,+p17@SFI1
Hg19::chr22:40289822..40289826,+p@chr22:40289822..40289826
+
Hg19::chr22:48786318..48786324,-p@chr22:48786318..48786324
-
Hg19::chr2:101855021..101855022,+p@chr2:101855021..101855022
+
Hg19::chr2:108856421..108856429,+p@chr2:108856421..108856429
+
Hg19::chr2:108905228..108905241,+p5@SULT1C2
Hg19::chr2:108932073..108932081,-p@chr2:108932073..108932081
-
Hg19::chr2:11720189..11720191,-p@chr2:11720189..11720191
-
Hg19::chr2:145425540..145425556,+p1@ENST00000431734
p1@ENST00000445791
p1@ENST00000451027
p1@uc002twc.2
Hg19::chr2:160522..160528,-p@chr2:160522..160528
-
Hg19::chr2:178509557..178509590,+p@chr2:178509557..178509590
+
Hg19::chr2:33208767..33208789,+p@chr2:33208767..33208789
+
Hg19::chr3:106851639..106851650,-p@chr3:106851639..106851650
-
Hg19::chr3:20422728..20422736,+p@chr3:20422728..20422736
+
Hg19::chr4:17654780..17654789,-p@chr4:17654780..17654789
-
Hg19::chr4:185269961..185269964,-p@chr4:185269961..185269964
-
Hg19::chr4:2038237..2038246,+p@chr4:2038237..2038246
+
Hg19::chr4:27079602..27079607,+p@chr4:27079602..27079607
+
Hg19::chr4:56683266..56683270,+p@chr4:56683266..56683270
+
Hg19::chr4:87587967..87588007,+p@chr4:87587967..87588007
+
Hg19::chr5:108342105..108342113,+p@chr5:108342105..108342113
+
Hg19::chr5:127132..127168,+p@chr5:127132..127168
+
Hg19::chr5:133842199..133842211,+p2@ENST00000515627
Hg19::chr5:180455151..180455156,-p@chr5:180455151..180455156
-
Hg19::chr5:33297946..33297962,-p1@ENST00000510327
Hg19::chr5:92899690..92899725,-p@chr5:92899690..92899725
-
Hg19::chr6:30899924..30899954,-p1@SFTA2
Hg19::chr6:30899962..30899981,-p3@SFTA2
Hg19::chr6:32185040..32185049,-p@chr6:32185040..32185049
-
Hg19::chr6:32185064..32185097,+p@chr6:32185064..32185097
+
Hg19::chr6:32186154..32186158,-p@chr6:32186154..32186158
-
Hg19::chr6:39909704..39909749,+p@chr6:39909704..39909749
+
Hg19::chr7:128481478..128481523,+p7@FLNC
Hg19::chr7:138414274..138414282,-p@chr7:138414274..138414282
-
Hg19::chr7:138414322..138414330,-p@chr7:138414322..138414330
-
Hg19::chr7:1516517..1516531,-p@chr7:1516517..1516531
-
Hg19::chr7:155754053..155754062,+p@chr7:155754053..155754062
+
Hg19::chr7:34697812..34697844,+p1@NPSR1
Hg19::chr7:34697846..34697874,+p2@NPSR1
Hg19::chr7:34890932..34890934,+p@chr7:34890932..34890934
+
Hg19::chr7:44233871..44233878,+p@chr7:44233871..44233878
+
Hg19::chr7:81399329..81399345,-p3@HGF
Hg19::chr7:81399355..81399373,-p1@HGF
Hg19::chr7:81399905..81399916,-p13@HGF
Hg19::chr7:81500953..81500994,+p@chr7:81500953..81500994
+
Hg19::chr7:81631574..81631599,+p@chr7:81631574..81631599
+
Hg19::chr7:95115174..95115187,+p2@ASB4
Hg19::chr7:95115210..95115217,+p3@ASB4
Hg19::chr8:144822864..144822887,-p@chr8:144822864..144822887
-
Hg19::chr8:19930258..19930259,-p@chr8:19930258..19930259
-
Hg19::chr8:28102617..28102623,-p@chr8:28102617..28102623
-
Hg19::chr8:60149243..60149248,-p@chr8:60149243..60149248
-
Hg19::chr8:60441483..60441488,+p@chr8:60441483..60441488
+
Hg19::chr8:60441494..60441507,+p@chr8:60441494..60441507
+
Hg19::chr8:82351669..82351674,+p3@ENST00000524085
Hg19::chr9:139259676..139259683,-p@chr9:139259676..139259683
-
Hg19::chrX:31090138..31090151,-p2@FTHL17
Hg19::chrX:31090152..31090184,-p1@FTHL17
Hg19::chrX:41887620..41887656,+p@chrX:41887620..41887656
+
Hg19::chrX:43036245..43036248,+p1@ENST00000440955
p1@uc004dfw.1
Hg19::chrX:49460578..49460597,-p1@PAGE1
Hg19::chrX:49460603..49460612,-p2@PAGE1
Hg19::chrX:52572878..52572895,+p@chrX:52572878..52572895
+
Hg19::chrX:55101450..55101482,+p1@PAGE2B
Hg19::chrX:55101495..55101519,+p2@PAGE2B
Hg19::chrX:70886748..70886757,-p@chrX:70886748..70886757
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006826iron ion transport0.031978858554635



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br>disease_data<br>

Disease
Ontology termp-valuen
adenocarcinoma2.15e-0925


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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