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MCL coexpression mm9:130: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002106!5.93e-09!6;UBERON:0004457!5.93e-09!6;UBERON:0000042!5.93e-09!6;UBERON:0004854!5.93e-09!6;UBERON:0009034!5.93e-09!6;UBERON:0002095!5.93e-09!6;UBERON:0004782!5.93e-09!6;UBERON:0003281!5.93e-09!6;UBERON:0009664!5.93e-09!6;UBERON:0002296!5.93e-09!6;UBERON:0005602!5.93e-09!6;UBERON:0001179!5.93e-09!6;UBERON:0006293!5.93e-09!6;UBERON:0003887!3.99e-08!10;UBERON:0005172!2.91e-07!49;UBERON:0005173!2.91e-07!49;UBERON:0002417!2.91e-07!49;UBERON:0000916!2.91e-07!49
|ontology_enrichment_uberon=UBERON:0002106!5.93e-09!6;UBERON:0004457!5.93e-09!6;UBERON:0000042!5.93e-09!6;UBERON:0004854!5.93e-09!6;UBERON:0009034!5.93e-09!6;UBERON:0002095!5.93e-09!6;UBERON:0004782!5.93e-09!6;UBERON:0003281!5.93e-09!6;UBERON:0009664!5.93e-09!6;UBERON:0002296!5.93e-09!6;UBERON:0005602!5.93e-09!6;UBERON:0001179!5.93e-09!6;UBERON:0006293!5.93e-09!6;UBERON:0003887!3.99e-08!10;UBERON:0005172!2.91e-07!49;UBERON:0005173!2.91e-07!49;UBERON:0002417!2.91e-07!49;UBERON:0000916!2.91e-07!49
|tfbs_overrepresentation_for_novel_motifs=0.269434,0.0103455,0.343545,0.567875,0.691681,0.0574944,0.127593,0.685983,0.0662191,0.056155,0.194635,0.425762,0.412268,0.488104,0.609072,0,0.179059,0.233573,0.883231,0.430757,0.145715,0.121596,0.138694,1.099,0.540062,0.0637413,1.6,0.975742,0.176789,0.051518,0.141313,0.587339,0.33528,0.490066,0.000788719,0.0334,0.00573243,0.237869,0.60237,0.0120148,0.245123,0.668048,0.274536,1.55104,0.268743,0.0435849,0.115419,0.327161,0.196609,0.104754,0.373368,0.0780469,0.2911,0.452765,0.15741,0.297579,0.848781,0.223387,1.2491,0.0531313,0.258187,0.0185955,0.0837381,0.0394935,0.158609,0.0508433,0.239758,0.504246,0.0725644,0.385255,0.0955454,1.55249,0.011205,0.522659,0.0199523,0.334354,0.204291,0.0253389,1.33111,0.560281,1.33455,0.194831,0.98455,0.37513,0.11559,1.62974e-06,0.000109212,0.43181,0.0286534,0.644359,1.42711,0.37615,0.293983,0.106186,0.00885685,0.347691,0.829951,0.0883166,0.516185,0.214638,2.28906,0.0819076,0.138831,0.37434,0.664979,0.0034282,0.0603843,0.318354,0.0388299,0.00294879,0.143987,0.432056,0.15464,0.202206,0.292119,0.84619,2.17542e-05,0.00249347,0.404569,1.64094,0.179403,0.586332,1.19695,0.48774,0.881989,0.0693513,0.135509,0.0844201,0.238763,0.41246,0.130183,0.354928,0.219708,0.0125573,0.828771,0.036037,0.083312,0.277825,0.272864,0.984367,0.616235,0.242858,0.0709003,0.0862141,0.0406241,0.66982,0.83338,0.946754,0.662115,0.00923176,0.260888,1.19571e-06,0.148817,0.267057,0.320853,0.568725,0.390191,0.234756,0.263836,0.288356,0.279451,0.368927,0.244566,0.140775,0.356792,0.152416,0.740488,0.655911,0.00338795
}}
}}

Revision as of 17:51, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79337250..79337261,+p5@Prtn3
Mm9::chr10:79342402..79342414,+p1@Prtn3
Mm9::chr10:79343725..79343765,+p2@Prtn3
Mm9::chr10:79343768..79343782,+p4@Prtn3
Mm9::chr10:79349047..79349064,+p1@Elane
Mm9::chr10:79349556..79349564,+p@chr10:79349556..79349564
+
Mm9::chr10:79349627..79349647,+p@chr10:79349627..79349647
+
Mm9::chr10:79350370..79350389,+p@chr10:79350370..79350389
+
Mm9::chr10:79350409..79350430,+p@chr10:79350409..79350430
+
Mm9::chr10:79350662..79350670,+p@chr10:79350662..79350670
+
Mm9::chr11:100940993..100941003,+p@chr11:100940993..100941003
+
Mm9::chr11:102051154..102051184,+p2@G6pc3
Mm9::chr11:102106691..102106729,+p@chr11:102106691..102106729
+
Mm9::chr11:75228646..75228653,-p15@Serpinf1
Mm9::chr11:86427784..86427788,-p@chr11:86427784..86427788
-
Mm9::chr11:87606908..87606917,+p12@Mpo
Mm9::chr11:87606934..87606947,+p8@Mpo
Mm9::chr11:87606972..87606985,+p10@Mpo
Mm9::chr11:87607224..87607307,+p1@Mpo
Mm9::chr11:87607333..87607349,+p3@Mpo
Mm9::chr11:87607545..87607559,+p4@Mpo
Mm9::chr11:87608281..87608317,+p7@Mpo
Mm9::chr11:87608715..87608729,+p@chr11:87608715..87608729
+
Mm9::chr11:87608788..87608802,+p@chr11:87608788..87608802
+
Mm9::chr11:87608809..87608820,+p@chr11:87608809..87608820
+
Mm9::chr11:87609285..87609294,+p@chr11:87609285..87609294
+
Mm9::chr11:87609357..87609376,+p@chr11:87609357..87609376
+
Mm9::chr11:87609533..87609545,+p@chr11:87609533..87609545
+
Mm9::chr11:87609585..87609595,+p@chr11:87609585..87609595
+
Mm9::chr11:87609755..87609765,+p@chr11:87609755..87609765
+
Mm9::chr11:87609862..87609910,+p@chr11:87609862..87609910
+
Mm9::chr11:87609923..87609936,-p@chr11:87609923..87609936
-
Mm9::chr11:87610818..87610833,+p@chr11:87610818..87610833
+
Mm9::chr11:87610930..87610947,+p@chr11:87610930..87610947
+
Mm9::chr11:87610960..87610973,+p@chr11:87610960..87610973
+
Mm9::chr11:87610986..87610995,+p@chr11:87610986..87610995
+
Mm9::chr11:87611059..87611070,+p@chr11:87611059..87611070
+
Mm9::chr11:87611109..87611119,+p@chr11:87611109..87611119
+
Mm9::chr11:87613391..87613402,+p@chr11:87613391..87613402
+
Mm9::chr11:87613474..87613486,+p@chr11:87613474..87613486
+
Mm9::chr11:87614543..87614553,+p@chr11:87614543..87614553
+
Mm9::chr11:87614718..87614764,+p@chr11:87614718..87614764
+
Mm9::chr12:78309274..78309291,+p@chr12:78309274..78309291
+
Mm9::chr14:45657852..45657854,+p@chr14:45657852..45657854
+
Mm9::chr14:56704051..56704054,-p1@Mcpt8
Mm9::chr14:56719550..56719560,-p@chr14:56719550..56719560
-
Mm9::chr14:56721295..56721309,-p1@Ctsg
Mm9::chr14:56723970..56723977,-p@chr14:56723970..56723977
-
Mm9::chr15:100640903..100640925,+p@chr15:100640903..100640925
+
Mm9::chr15:100641018..100641032,+p@chr15:100641018..100641032
+
Mm9::chr15:74901233..74901244,+p@chr15:74901233..74901244
+
Mm9::chr15:98371815..98371820,+p@chr15:98371815..98371820
+
Mm9::chr16:93958044..93958047,+p@chr16:93958044..93958047
+
Mm9::chr17:74715425..74715447,-p4@Dpy30
Mm9::chr18:15353759..15353770,+p@chr18:15353759..15353770
+
Mm9::chr19:11698168..11698199,-p1@Ms4a2
Mm9::chr19:11715203..11715216,-p3@Ms4a3
Mm9::chr19:11715217..11715234,-p1@Ms4a3
Mm9::chr19:11715262..11715263,-p6@Ms4a3
Mm9::chr19:11715293..11715298,-p5@Ms4a3
Mm9::chr19:11715318..11715330,-p4@Ms4a3
Mm9::chr19:11715334..11715346,-p2@Ms4a3
Mm9::chr1:166017042..166017053,-p@chr1:166017042..166017053
-
Mm9::chr1:179641376..179641382,+p@chr1:179641376..179641382
+
Mm9::chr2:131977673..131977687,+p@chr2:131977673..131977687
+
Mm9::chr2:169957879..169957886,+p@chr2:169957879..169957886
+
Mm9::chr2:29917367..29917379,+p3@Gm9531
p3@LOC100504508
p9@Set
Mm9::chr2:29917402..29917411,+p11@Set
p5@Gm9531
p5@LOC100504508
Mm9::chr2:29917425..29917432,+p10@Set
p4@Gm9531
p4@LOC100504508
Mm9::chr2:44967789..44967800,+p7@Gm13476
Mm9::chr3:100728851..100728869,+p@chr3:100728851..100728869
+
Mm9::chr4:102651296..102651318,+p@chr4:102651296..102651318
+
Mm9::chr4:118084341..118084363,+p2@Med8
Mm9::chr4:88168746..88168751,-p1@Ifnb1
Mm9::chr5:128096180..128096192,+p@chr5:128096180..128096192
+
Mm9::chr5:138041010..138041047,-p@chr5:138041010..138041047
-
Mm9::chr5:53980199..53980204,+p@chr5:53980199..53980204
+
Mm9::chr6:17358333..17358351,+p@chr6:17358333..17358351
+
Mm9::chr7:134005204..134005242,-p4@Ino80e
Mm9::chr7:50692336..50692351,+p2@Nkg7
Mm9::chr7:50692956..50692966,+p@chr7:50692956..50692966
+
Mm9::chr7:50692970..50692994,+p@chr7:50692970..50692994
+
Mm9::chr7:87975697..87975732,+p@chr7:87975697..87975732
+
Mm9::chr8:108535303..108535321,-p@chr8:108535303..108535321
-
Mm9::chr8:33060518..33060546,-p3@Nrg1
Mm9::chr9:48211876..48211916,+p@chr9:48211876..48211916
+
Mm9::chr9:48212007..48212021,+p@chr9:48212007..48212021
+
Mm9::chr9:48212037..48212046,+p@chr9:48212037..48212046
+
Mm9::chr9:69287812..69287815,-p@chr9:69287812..69287815
-
Mm9::chr9:69291132..69291136,-p@chr9:69291132..69291136
-
Mm9::chr9:70305690..70305706,-p@chr9:70305690..70305706
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005615extracellular space0.0212704807911146
GO:0044421extracellular region part0.0212704807911146
GO:0004252serine-type endopeptidase activity0.0343763886439808
GO:0017171serine hydrolase activity0.0343763886439808
GO:0008236serine-type peptidase activity0.0343763886439808
GO:0004261cathepsin G activity0.0390072864734564
GO:0005176ErbB-2 class receptor binding0.0467895094059812
GO:0032998Fc-epsilon receptor I complex0.0467895094059812
GO:0032997Fc receptor complex0.0467895094059812
GO:0004346glucose-6-phosphatase activity0.0467895094059812



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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