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MCL coexpression mm9:1078: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
|ontology_enrichment_uberon=
|tfbs_overrepresentation_for_novel_motifs=1.95401,0.161863,1.05921,0.480627,0.810002,0.495263,0.587291,0.206208,0.616096,0.826837,0.542749,0.575086,0.59526,0.599731,0.847296,0,0.795315,0.291368,0.561256,0.361892,0.374752,1.47264,1.45867,0.29769,0.419327,1.51917,0.184473,0.516511,0.344372,0.876948,0.50223,0.897561,0.289148,0.166577,0.848378,0.248902,0.766323,0.57142,0.258564,2.65781,0.295233,1.26538,0.932136,0.317766,0.277561,1.18381,0.714592,0.532496,0.478447,0.347313,0.777641,0.654933,0.851157,1.04034,1.0579,0.606984,0.356236,0.56214,0.522357,0.604914,0.877332,0.664501,0.226529,0.766235,0.618279,0.807219,1.19497,1.54543,0.872612,1.39786,1.79967,0.21183,0.0869413,1.09164,1.55661,0.482617,0.498755,0.703064,0.859987,0.378988,0.212973,0.812889,0.663039,0.580284,0.975495,0.613286,0.164297,0.145788,0.719558,1.70793,1.26498,0.980512,0.910485,0.305079,0.254625,0.237542,0.203879,0.913319,0.71485,0.127063,0.7665,0.897279,1.02279,0.778243,0.777175,1.26443,0.837607,0.528416,0.383871,0.376549,0.430942,1.02459,0.380122,0.547992,1.27206,0.796976,3.30647,0.484437,0.796633,1.38758,1.09707,1.76329,0.629509,0.702145,1.32639,0.863723,0.595563,0.903645,1.19345,0.829907,1.00568,0.473246,1.16374,0.620831,1.29374,0.0806013,0.446555,0.508896,1.24438,2.07659,1.67603,1.19971,0.641722,0.908128,0.770616,0.507927,0.717753,2.03691,1.13988,1.47713,1.42503,0.0736236,2.37131,0.243291,0.619892,1.12411,0.655955,0.327731,0.435579,0.446272,1.25393,0.974632,0.864173,0.428662,0.767269,0.612377,0.278874,0.573477,1.86859
}}
}}

Revision as of 19:21, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:55220048..55220060,+p@chr11:55220048..55220060
+
Mm9::chr7:106495646..106495676,-p@chr7:106495646..106495676
-
Mm9::chr7:106497424..106497441,+p@chr7:106497424..106497441
+
Mm9::chr7:106497508..106497559,-p@chr7:106497508..106497559
-
Mm9::chr7:106497588..106497613,-p@chr7:106497588..106497613
-
Mm9::chr7:106497675..106497687,-p@chr7:106497675..106497687
-
Mm9::chr7:86293928..86293948,-p2@Mfge8


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0008429phosphatidylethanolamine binding0.0111756326709401
GO:0001786phosphatidylserine binding0.0111756326709401
GO:0006910phagocytosis, recognition0.0198607156030382
GO:0006911phagocytosis, engulfment0.0198607156030382
GO:0050766positive regulation of phagocytosis0.0198607156030382
GO:0050764regulation of phagocytosis0.0198607156030382
GO:0045807positive regulation of endocytosis0.0204779951512838
GO:0005178integrin binding0.0204779951512838
GO:0009408response to heat0.0206689683680001
GO:0051050positive regulation of transport0.0206689683680001
GO:0030100regulation of endocytosis0.0206689683680001
GO:0006909phagocytosis0.0206689683680001
GO:0007338single fertilization0.0206689683680001
GO:0008037cell recognition0.0206689683680001
GO:0009266response to temperature stimulus0.0206689683680001
GO:0009566fertilization0.0206689683680001
GO:0032403protein complex binding0.0206689683680001
GO:0019897extrinsic to plasma membrane0.0206689683680001
GO:0051082unfolded protein binding0.0227091238159021
GO:0019898extrinsic to membrane0.025657479305141
GO:0051049regulation of transport0.0297355554952831
GO:0004867serine-type endopeptidase inhibitor activity0.034112378156982
GO:0005615extracellular space0.0344229673627489
GO:0044421extracellular region part0.0370600414302398
GO:0009897external side of plasma membrane0.0401296360079547
GO:0004866endopeptidase inhibitor activity0.0401296360079547
GO:0030414protease inhibitor activity0.0401296360079547
GO:0010324membrane invagination0.0415337643679454
GO:0006897endocytosis0.0415337643679454
GO:0009628response to abiotic stimulus0.0415337643679454
GO:0009986cell surface0.0442405047433432
GO:0005543phospholipid binding0.0448897475434736
GO:0022414reproductive process0.0448897475434736
GO:0004857enzyme inhibitor activity0.0448897475434736
GO:0016044membrane organization and biogenesis0.0492860006314063



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}