Personal tools

UBERON:0002199: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002199
|name=integument
|namespace=
|def="The dermis, epidermis and hypodermis." [Wikipedia:Integument]
|xref=AAO:0000239;;BTO:0000634;;EHDAA2:0001844;;FMA:74657;;galen:Integument;;MESH:A.17.815;;TAO:0000368;;VSAO:0000029;;ZFA:0000368
|is_a=UBERON:0003102
|synonym="dermal system" RELATED [BTO:0000634];;"dermoid system" RELATED [BTO:0000634];;"Hautsystem" RELATED [BTO:0000634];;"integumentum commune" EXACT [FMA:74657, FMA:TA];;"skin" RELATED [];;"tegument" RELATED [BTO:0000634];;"the integument" EXACT [FMA:74657]
|comment=Usage notes: in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates. Note that the VSAO class appears to include adnexa by its definition.
|alt_id=UBERON:FMA_74657-ZFA_0000368
|alt_id=UBERON:FMA_74657-ZFA_0000368
|disjoint_from=
|anatomical_img_id=FMA:74657
|union_of=
|comment=Usage notes: in FMA intergument
|created_by=
|created_by=
|obo_creation_date=
|def="The dermis, epidermis and hypodermis." [Wikipedia:Integument]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002199
|is_a=UBERON:0003102
|is_obsolete=
|located_in=
|located_in=
|name=integument
|namespace=
|obo_creation_date=
|part_of=UBERON:0002416
|part_of=UBERON:0002416
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]" xsd:string;;UBPROP:0000001 "Surface structure that is the outer protective covering of the body.[VSAO]" xsd:string;;UBPROP:0000001 "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]" xsd:string;;UBPROP:0000001 "Surface structure that is the outer protective covering of the body.[VSAO]" xsd:string;;UBPROP:0000001 "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="dermal system" RELATED [BTO:0000634];;"dermoid system" RELATED [BTO:0000634];;"Hautsystem" RELATED [BTO:0000634];;"integumentum commune" EXACT [FMA:74657, FMA:TA];;"skin" RELATED [];;"tegument" RELATED [BTO:0000634];;"the integument" EXACT [FMA:74657]
|union_of=
|xref=AAO:0000239;;BTO:0000634;;EHDAA2:0001844;;FMA:74657;;galen:Integument;;MESH:A.17.815;;TAO:0000368;;VSAO:0000029;;ZFA:0000368
}}
}}

Revision as of 18:41, 29 November 2012

Name:integument
Definition:"The dermis, epidermis and hypodermis." [Wikipedia:Integument]
Xrefs:
links:

AAO:0000239
BTO:0000634
EHDAA2:0001844
FMA:74657
galen:Integument
MESH:A.17.815
TAO:0000368
VSAO:0000029

ZFA:0000368
Synonyms: "dermal system" RELATED [BTO:0000634]
"dermoid system" RELATED [BTO:0000634]
"Hautsystem" RELATED [BTO:0000634]
"integumentum commune" EXACT [FMA:74657, FMA:TA]
"skin" RELATED []
"tegument" RELATED [BTO:0000634]
"the integument" EXACT [FMA:74657]
Comments:Usage notes: in FMA intergument
Alt_id: UBERON:FMA_74657-ZFA_0000368
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003102(surface structure)
part_of:UBERON:0002416(integumental system)



Children

is a:FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso)
part of:UBERON:0002072 (hypodermis),UBERON:0002097 (skin of body),UBERON:0010083 (future dermis),UBERON:0011272 (embryonic skin basal layer),UBERON:3000961 (external integument structure)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002199 (integument), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.4e-86FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Dlx3
1.4e-86FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Krt74
1.4e-86FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Krt74
1.4e-86FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Skint11
1.4e-86FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr13:113381448..113381495, -
1.4e-86FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr13:113381448..113381495, -
1.4e-86FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Skint11
1.07e-72FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_961ed09addc5c6652f4870e702679aacp1@Pnpla5
1.07e-72FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_961ed09addc5c6652f4870e702679aacp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_961ed09addc5c6652f4870e702679aacp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_961ed09addc5c6652f4870e702679aacp@chr7:97432305..97432311, +
1.07e-72FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_961ed09addc5c6652f4870e702679aacp@chr7:97432305..97432311, +
1.07e-72FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_961ed09addc5c6652f4870e702679aacp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_961ed09addc5c6652f4870e702679aacp6@Mfsd4
1.07e-72FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_961ed09addc5c6652f4870e702679aacp@chr3:90343597..90343613, +
1.07e-72FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_961ed09addc5c6652f4870e702679aacp1@Pnpla5
1.07e-72FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_961ed09addc5c6652f4870e702679aacp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_961ed09addc5c6652f4870e702679aacp6@Mfsd4
1.07e-72FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_961ed09addc5c6652f4870e702679aacp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_961ed09addc5c6652f4870e702679aacp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_961ed09addc5c6652f4870e702679aacp@chr3:90343597..90343613, +
1.5e-72FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_25ea365b38357d62a79efd8ee149e419p@chr10:66991117..66991146, +
1.5e-72FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_25ea365b38357d62a79efd8ee149e419p1@Lyg2
1.5e-72FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_25ea365b38357d62a79efd8ee149e419p1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_25ea365b38357d62a79efd8ee149e419p@chr6:97778311..97778326, +
1.5e-72FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_25ea365b38357d62a79efd8ee149e419p@chr6:134595955..134595965, -
1.5e-72FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_25ea365b38357d62a79efd8ee149e419p1@Actbl2
1.5e-72FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_25ea365b38357d62a79efd8ee149e419p25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_25ea365b38357d62a79efd8ee149e419p1@Actbl2
1.5e-72FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_25ea365b38357d62a79efd8ee149e419p@chr3:138004932..138004945, +
1.5e-72FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_25ea365b38357d62a79efd8ee149e419p@chr6:97778311..97778326, +
1.5e-72FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_25ea365b38357d62a79efd8ee149e419p@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_25ea365b38357d62a79efd8ee149e419p@chr10:43724117..43724131, -
1.5e-72FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_25ea365b38357d62a79efd8ee149e419p@chr10:43724117..43724131, -
1.5e-72FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_25ea365b38357d62a79efd8ee149e419p@chr10:66991117..66991146, +
1.5e-72FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_25ea365b38357d62a79efd8ee149e419p@chr3:138004932..138004945, +
1.5e-72FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_25ea365b38357d62a79efd8ee149e419p2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_25ea365b38357d62a79efd8ee149e419p25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_25ea365b38357d62a79efd8ee149e419p2@Lyg2
2.1e-72FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr7:117436977..117436981, -
2.1e-72FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr4:111707315..111707319, +
2.1e-72FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr7:117436977..117436981, -
2.1e-72FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr4:111707315..111707319, +
4.13e-72FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_9761685c0b2811dc127fe076c8e511c3p1@Skint5
4.13e-72FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_9761685c0b2811dc127fe076c8e511c3p1@Skint5
1.65e-69FFCP PHASE1:Mm9::chr1:46949977..46949981,-#_af8605b327532c752689e489328e6bdcp@chr1:46949977..46949981, -
1.65e-69FFCP PHASE2:Mm9::chr3:93249140..93249149,+#_af8605b327532c752689e489328e6bdcp@chr3:93249140..93249149, +
1.65e-69FFCP PHASE1:Mm9::chr4:82496602..82496610,-#_af8605b327532c752689e489328e6bdcp8@Zdhhc21
1.65e-69FFCP PHASE2:Mm9::chr11:99957587..99957593,-#_af8605b327532c752689e489328e6bdcp2@Krt35
1.65e-69FFCP PHASE1:Mm9::chr16:56831943..56831948,-#_af8605b327532c752689e489328e6bdcp14@Tmem45a
1.65e-69FFCP PHASE2:Mm9::chr15:101770858..101770865,-#_af8605b327532c752689e489328e6bdcp2@Krt79
1.65e-69FFCP PHASE1:Mm9::chr5:81472249..81472294,+#_af8605b327532c752689e489328e6bdcp@chr5:81472249..81472294, +
1.65e-69FFCP PHASE2:Mm9::chr3:93248809..93248818,+#_af8605b327532c752689e489328e6bdcp@chr3:93248809..93248818, +
1.65e-69FFCP PHASE1:Mm9::chr14:57868950..57868959,+#_af8605b327532c752689e489328e6bdcp@chr14:57868950..57868959, +
1.65e-69FFCP PHASE1:Mm9::chr11:95086849..95086855,-#_af8605b327532c752689e489328e6bdcp3@ENSMUST00000150818
1.65e-69FFCP PHASE2:Mm9::chr2:129949046..129949050,+#_af8605b327532c752689e489328e6bdcp2@Tgm6
1.65e-69FFCP PHASE2:Mm9::chr16:56831943..56831948,-#_af8605b327532c752689e489328e6bdcp14@Tmem45a
1.65e-69FFCP PHASE2:Mm9::chr5:113617681..113617724,-#_af8605b327532c752689e489328e6bdcp@chr5:113617681..113617724, -
1.65e-69FFCP PHASE2:Mm9::chr14:21082655..21082682,-#_af8605b327532c752689e489328e6bdcp@chr14:21082655..21082682, -
1.65e-69FFCP PHASE2:Mm9::chr5:75107109..75107125,-#_af8605b327532c752689e489328e6bdcp@chr5:75107109..75107125, -
1.65e-69FFCP PHASE2:Mm9::chr11:99913595..99913606,+#_af8605b327532c752689e489328e6bdcp1@ENSMUST00000136820, p1@uc007lke.1
1.65e-69FFCP PHASE2:Mm9::chr4:57351817..57351823,-#_af8605b327532c752689e489328e6bdcp@chr4:57351817..57351823, -
1.65e-69FFCP PHASE2:Mm9::chr18:20631745..20631746,+#_af8605b327532c752689e489328e6bdcp@chr18:20631745..20631746, +
1.65e-69FFCP PHASE2:Mm9::chr9:43876286..43876293,+#_af8605b327532c752689e489328e6bdcp@chr9:43876286..43876293, +
1.65e-69FFCP PHASE2:Mm9::chr3:59629633..59629644,+#_af8605b327532c752689e489328e6bdcp@chr3:59629633..59629644, +
1.65e-69FFCP PHASE2:Mm9::chr3:93247552..93247564,+#_af8605b327532c752689e489328e6bdcp@chr3:93247552..93247564, +
1.65e-69FFCP PHASE2:Mm9::chr19:59989963..59989986,-#_af8605b327532c752689e489328e6bdcp@chr19:59989963..59989986, -
1.65e-69FFCP PHASE1:Mm9::chr11:99957587..99957593,-#_af8605b327532c752689e489328e6bdcp2@Krt35
1.65e-69FFCP PHASE2:Mm9::chr11:115168521..115168541,+#_af8605b327532c752689e489328e6bdcp1@Otop2
1.65e-69FFCP PHASE2:Mm9::chr4:82496602..82496610,-#_af8605b327532c752689e489328e6bdcp8@Zdhhc21
1.65e-69FFCP PHASE2:Mm9::chr6:142831327..142831375,+#_af8605b327532c752689e489328e6bdcp@chr6:142831327..142831375, +
1.65e-69FFCP PHASE1:Mm9::chr4:144311334..144311342,-#_af8605b327532c752689e489328e6bdcp3@Gm13178
1.65e-69FFCP PHASE1:Mm9::chrX:166374681..166374688,+#_af8605b327532c752689e489328e6bdcp@chrX:166374681..166374688, +
1.65e-69FFCP PHASE2:Mm9::chr11:95086849..95086855,-#_af8605b327532c752689e489328e6bdcp3@ENSMUST00000150818
1.65e-69FFCP PHASE1:Mm9::chr18:20469239..20469258,+#_af8605b327532c752689e489328e6bdcp2@Dsg1a
1.65e-69FFCP PHASE2:Mm9::chr9:67169769..67169780,-#_af8605b327532c752689e489328e6bdcp@chr9:67169769..67169780, -
1.65e-69FFCP PHASE2:Mm9::chr14:57868950..57868959,+#_af8605b327532c752689e489328e6bdcp@chr14:57868950..57868959, +
1.65e-69FFCP PHASE1:Mm9::chr6:97778294..97778306,+#_af8605b327532c752689e489328e6bdcp@chr6:97778294..97778306, +
1.65e-69FFCP PHASE2:Mm9::chr5:81472249..81472294,+#_af8605b327532c752689e489328e6bdcp@chr5:81472249..81472294, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Surface structure that is the outer protective covering of the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002199&oldid=2565136"