Template:F5samples: Difference between revisions
From FANTOM5_SSTAR
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{{#if: {{#pos:{{{top_motifs}}}|;}} | | {{#if: {{#pos:{{{top_motifs}}}|;}} | | ||
== Top motif activities with MARA == | == Top motif activities with MARA == | ||
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{{#if: {{#pos:{{{profile_hcage}}}|CNhs}} | | {{#if: {{#pos:{{{profile_hcage}}}|CNhs}} | |
Revision as of 15:35, 8 February 2013
Name: | {{{name}}} |
---|---|
Species: | {{{sample_species}}} |
Genomic View: | zenbu , UCSC |
<script type="text/javascript" charset="utf-8">
var top_motif_d=
[
</html>
{{#top_motifs_dtarr:{{{top_motifs}}}}}
];
$(document).ready(function() {
$('#top_motiftb').html( '
' ); $('#top_motiftb_cont').dataTable( { "sScrollY": "300px", "bPaginate": false, "bScrollCollapse": true, "iDisplayLength": -1, "aaData": top_motif_d, "aoColumns": [ { "sTitle": "Motifs","sWidth": "30px", "fnRender": function(obj) { var id = obj.aData[ obj.iDataColumn ].split("!"); return sReturn = ""+id[1]+""; } }, { "sTitle": "Z-score", "sType": "numeric", "sWidth": "30px"}, ], "aaSorting": [[ 1, "desc" ]] } ); $("#top_motiftb thead th").css('line-height', '34px'); } );
}} -->
Details
Transcriptome profiling
hCAGE | {{{profile_hcage}}} |
---|---|
RNA-seq | {{{profile_rnaseq}}} |
smallRNA seq | {{{profile_srnaseq}}} |
nanoCAGEscan | {{{profile_cagescan}}} |
Sample info
strain | {{{sample_strain}}} |
---|---|
tissue | {{{sample_tissue}}} |
dev_stage | {{{sample_dev_stage}}} |
sex | {{{sample_sex}}} |
age | {{{sample_age}}} |
ethnicity | {{{sample_ethnicity}}} |
cell_type | {{{sample_cell_type}}} |
cell_line | {{{sample_cell_line}}} |
collaboration | {{{sample_collaboration}}} |
Experimental condition | {{{sample_experimental_condition}}} |
disease | {{{sample_disease}}} |
cell_lot | {{{sample_cell_lot}}} |
cell_catalog | {{{sample_cell_catalog}}} |
company | {{{sample_company}}} |
donor(cell lot) | {{{sample_donor(cell lot)}}} |
Note | {{{sample_note}}} |
RNA info
sample_id | {{{sample_id}}} |
---|---|
tube_id | {{{rna_tube_id}}} |
box | {{{rna_box}}} |
position | {{{rna_position}}} |
lot_number | {{{rna_lot_number}}} |
catalog_number | {{{rna_catalog_number}}} |
RIN | {{{rna_rin}}} |
OD260/230 | {{{rna_od260/230}}} |
OD260/280 | {{{rna_od260/280}}} |
sample_type | {{{rna_sample_type}}} |
extraction_protocol | {{{rna_extraction_protocol}}} |
weight_ug | {{{rna_weight_ug}}} |
concentration | {{{rna_concentration}}} |
Parent ontology
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestors in ontology (non-development)
Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji
CL: Cell type
DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
UBERON: Anatomy
FF: FANTOM5
Ancestors in ontology (development)
Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji
De novo Motif
<b>Homer de novo Motifs</b><br>Analyst: Michael Rehli
Related Novel Motifs
The values shown are the p-values of novel motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon
CAGE Library ID:{{{profile_hcage}}}
This sample isn't target for the analysis
Related JASPAR Motifs
The values shown are the p-values of jaspar motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon
CAGE Library ID:{{{profile_hcage}}}
This sample isn't target for the analysis
Repeat Enrichment
<br>Analyst:
no result for this sample
Relative expression of the co-expression cluster
<br>Analyst: