NonredundantMotifs:23: Difference between revisions
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|entrez_gene_id=83741
|motif_cluster_2013_march_motif_members= /SWISSREGULON:TFAP2B.p2~TFAP2{A,C}.p2 /HOMER:TFAP2C_MCF7-TFAP2c-ChIP-Seq~TFAP2A_Hela-AP2alpha-...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=83741 | |entrez_gene_id=83741 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:TFAP2B.p2~TFAP2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0003.1;TFAP2A /HOCOMOCO:AP2C_f1~AP2B_f1~AP2A_f2~AP2D_f1 /SWISSREGULON:TFAP2B.p2~TFAP2(A,C).p2 /HOMER:TFAP2C_MCF7-TFAP2c-ChIP-Seq~TFAP2A_Hela-AP2alpha-ChIP-Seq /UNIPROBE:Tcfap2b_primary;SCI09~Tcfap2b_secondary;SCI09~Tcfap2c_primary;SCI09~Tcfap2a_primary;SCI09~Tcfap2e_primary;SCI09 | ||
|name=known23 | |name=known23 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known23
- db :HOCOMOCO
- Id :AP2D_f1
- name :
- score :4.056188375367438
- External refs:
- Internal refs:
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Sub Motif Members
