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NonredundantMotifs:72: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.0;3.92857142857143;0.0;1.07142857142857!2;3.392857142857145;1.60714285714286;0.0;0.0!3;0.0;0.0;4.464285714285715;0.535714285714285!4;0.0;0.0;3.392857142857145;1.60714285714286!5;0.0;0.0;5.0;0.0!6;0.0;0.0;3.2142857142857153;1.785714285714285!7;0.0;0.0;5.0;0.0!8;0.0;0.535714285714285;0.0;4.464285714285715!9;0.0;0.535714285714285;4.464285714285715;0.0
|entrez_gene_id=11279
|entrez_gene_id=11279
|motif_cluster_2013_march_motif_members= /HOCOMOCO:KLF8_f1 /SWISSREGULON:DBP.p2 /UNIPROBE:Zscan4_secondary;SCI09~Gm397_secondary;SCI09
|motif_cluster_2013_march_motif_members= /SWISSREGULON:DBP.p2 /UNIPROBE:Zscan4_secondary;SCI09~Gm397_secondary;SCI09 /HOCOMOCO:KLF8_f1
|name=known72
|name=known72
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 10:46, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known72
  • db :HOCOMOCO
  • Id :KLF8_f1
  • name  :
  • score :0.8161558336152298
  • External refs:
EntrezGene:11279
UniProt:11279

  • Internal refs:
EntrezGene:11279


Motif matrix
P0ACGT
10.03.928571428571430.01.07142857142857
23.3928571428571451.607142857142860.00.0
30.00.04.4642857142857150.535714285714285
40.00.03.3928571428571451.60714285714286
50.00.05.00.0
60.00.03.21428571428571531.785714285714285
70.00.05.00.0
80.00.5357142857142850.04.464285714285715
90.00.5357142857142854.4642857142857150.0

Sub Motif Members