NonredundantMotifs:120: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=8932
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MECP2_f1~MBD2_si
|name=known120
|representative_motif_db=HOCOMOCO
|representative_m...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;16.778203164272853;44.412890728957606;44.412890728957606;4.934765636550844!2;5.921718763861022;43.42593760164748;51.321562620128795;9.869531273101698!3;0.0;27.63468756468475;82.90406269405436;0.0!4;0.0;0.0;57.24328138398986;53.29546887474914!5;0.0;110.538750258739;0.0;0.0!6;0.0;110.538750258739;0.0;0.0!7;0.0;0.0;110.538750258739;0.0!8;0.0;0.0;110.538750258739;0.0!9;59.21718763861021;39.47812509240677;11.84343752772202;0.0!10;11.84343752772202;11.84343752772202;65.13890640247128;21.712968800823685!11;35.53031258316606;13.817343782342375;53.29546887474914;7.895625018481353 | |||
|entrez_gene_id=8932 | |entrez_gene_id=8932 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MECP2_f1~MBD2_si | |motif_cluster_2013_march_motif_members= /HOCOMOCO:MECP2_f1~MBD2_si | ||
Revision as of 10:47, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known120
- db :HOCOMOCO
- Id :MBD2_si
- name :
- score :2.9617815408760024
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
