NonredundantMotifs:23: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;1.16279069767442;2.44186046511628;1.16279069767442;0.23255813953488352!2;0.0;0.0;5.0;0.0!3;0.0;3.1395348837209305;0.930232558139535;0.930232558139535!4;0.0;5.0;0.0;0.0!5;0.0;3.0232558139534897;0.0;1.9767441860465098!6;0.0;0.0;5.0;0.0!7;1.9767441860465098;1.16279069767442;1.86046511627907;0.0!8;0.0;0.0;5.0;0.0!9;0.0;0.0;5.0;0.0!10;0.0;4.069767441860465;0.930232558139535;0.0!11;0.930232558139535;1.16279069767442;1.9767441860465098;0.930232558139535!12;0.0;4.069767441860465;0.930232558139535;0.0!13;0.0;0.930232558139535;4.069767441860465;0.0!14;0.23255813953488352;1.16279069767442;0.23255813953488352;3.372093023255815 | |PWM=P0;A;C;G;T!1;1.16279069767442;2.44186046511628;1.16279069767442;0.23255813953488352!2;0.0;0.0;5.0;0.0!3;0.0;3.1395348837209305;0.930232558139535;0.930232558139535!4;0.0;5.0;0.0;0.0!5;0.0;3.0232558139534897;0.0;1.9767441860465098!6;0.0;0.0;5.0;0.0!7;1.9767441860465098;1.16279069767442;1.86046511627907;0.0!8;0.0;0.0;5.0;0.0!9;0.0;0.0;5.0;0.0!10;0.0;4.069767441860465;0.930232558139535;0.0!11;0.930232558139535;1.16279069767442;1.9767441860465098;0.930232558139535!12;0.0;4.069767441860465;0.930232558139535;0.0!13;0.0;0.930232558139535;4.069767441860465;0.0!14;0.23255813953488352;1.16279069767442;0.23255813953488352;3.372093023255815 | ||
|entrez_gene_id=83741 | |entrez_gene_id=83741 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:TFAP2B.p2~TFAP2(A,C).p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0003.1;TFAP2A /SWISSREGULON:TFAP2B.p2~TFAP2(A,C).p2 /HOMER:TFAP2C_MCF7-TFAP2c-ChIP-Seq~TFAP2A_Hela-AP2alpha-ChIP-Seq /UNIPROBE:Tcfap2b_primary;SCI09~Tcfap2b_secondary;SCI09~Tcfap2c_primary;SCI09~Tcfap2a_primary;SCI09~Tcfap2e_primary;SCI09 /HOCOMOCO:AP2C_f1~AP2B_f1~AP2A_f2~AP2D_f1 | ||
|name=known23 | |name=known23 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known23
- db :HOCOMOCO
- Id :AP2D_f1
- name :
- score :4.056188375367438
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
