NonredundantMotifs:44: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;24.833194;49.909662;12.741555;5.420911!2;22.444117;25.789536;34.701953;9.969716!3;18.784722;0;72.238452;1.882148!4;32.427396;0;60.477926;0!5;20.189253;0.88108;66.411359;5.42363!6;0;92.063543;0;0.841779!7;85.656736;2.592464;3.656161;0.999961!8;8.111316;2.657697;12.65702;69.479289!9;0;0.850188;92.055134;0!10;3.889954;60.437433;2.528145;26.04979!11;1.742354;70.705243;7.574414;12.883311!12;1.847559;49.924775;31.043855;10.089133!13;5.242777;2.845862;75.807501;9.009182!14;8.123152;0;72.816085;11.966085!15;25.88775;0;66.104064;0.913508!16;9.196064;65.583922;16.211154;1.914182!17;56.757966;3.967273;4.800638;27.379445!18;16.192636;0;16.667139;60.045547!19;1.887978;9.659654;77.612774;3.744916!20;13.18344;18.179337;4.496092;57.046453 | |PWM=PO;A;C;G;T!1;24.833194;49.909662;12.741555;5.420911!2;22.444117;25.789536;34.701953;9.969716!3;18.784722;0;72.238452;1.882148!4;32.427396;0;60.477926;0!5;20.189253;0.88108;66.411359;5.42363!6;0;92.063543;0;0.841779!7;85.656736;2.592464;3.656161;0.999961!8;8.111316;2.657697;12.65702;69.479289!9;0;0.850188;92.055134;0!10;3.889954;60.437433;2.528145;26.04979!11;1.742354;70.705243;7.574414;12.883311!12;1.847559;49.924775;31.043855;10.089133!13;5.242777;2.845862;75.807501;9.009182!14;8.123152;0;72.816085;11.966085!15;25.88775;0;66.104064;0.913508!16;9.196064;65.583922;16.211154;1.914182!17;56.757966;3.967273;4.800638;27.379445!18;16.192636;0;16.667139;60.045547!19;1.887978;9.659654;77.612774;3.744916!20;13.18344;18.179337;4.496092;57.046453 | ||
|entrez_gene_id= | |entrez_gene_id=TP53 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0106.1;TP53 /SWISSREGULON:TP53.p2 /HOMER:TP53_p53-ChIP-Chip~TP63_Keratinocyte-p63-ChIP-Seq~TP53_Saos-p53-ChIP-Seq /HOCOMOCO:P53_f2~P63_si~P73_si | ||
|name=known44 | |name=known44 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=TP53.p2 | |representative_motif_id=TP53.p2 | ||
|representative_motif_name= | |representative_motif_name=TP53 | ||
|score=1.0330824947633266 | |score=1.0330824947633266 | ||
|uniprot_entry_name= | |uniprot_entry_name=TP53 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known44
- db :SWISSREGULON
- Id :TP53.p2
- name :TP53
- score :1.0330824947633266
- External refs:
- Internal refs:
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Sub Motif Members
