NonredundantMotifs:23: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1; | |PWM=P0;A;C;G;T!1;0;0;185;0!2;0;185;0;0!3;0;185;0;0!4;22;71;46;46!5;19;57;61;48!6;55;44;67;19!7;53;30;91;11!8;19;16;137;13!9;9;78;79;19 | ||
|entrez_gene_id= | |entrez_gene_id=7020 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0003.1;TFAP2A /SWISSREGULON: | |motif_cluster_2013_march_motif_members= /HOCOMOCO:AP2A_f2~AP2C_f1~AP2B_f1~AP2D_f1 /HOMER:TFAP2A_Hela-AP2alpha-ChIP-Seq~TFAP2C_MCF7-TFAP2c-ChIP-Seq /JASPAR:MA0003.1;TFAP2A /SWISSREGULON:TFAP2(A,C).p2~TFAP2B.p2 /UNIPROBE:Tcfap2a_primary;SCI09~Tcfap2c_primary;SCI09~Tcfap2b_primary;SCI09~Tcfap2b_secondary;SCI09~Tcfap2e_primary;SCI09 | ||
|name= | |name=non-redundant23 | ||
|representative_motif_db= | |representative_motif_db=JASPAR | ||
|representative_motif_id= | |representative_motif_id=MA0003.1 | ||
|representative_motif_name= | |representative_motif_name=TFAP2A | ||
|score= | |score=3.387458406400475 | ||
|uniprot_entry_name= | |uniprot_entry_name=AP2A_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:46, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant23
- db :JASPAR
- Id :MA0003.1
- name :TFAP2A
- score :3.387458406400475
- External refs:
- Internal refs:
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Sub Motif Members
