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NonredundantMotifs:33: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.114461549089786;0.345602359480712;0.289353230115255;0.250582861314247!2;0.192593287280278;0.25084449306752;0.116249624289927;0.440312595362275!3;0.338837829775925;0.304929261569313;0.195842542660874;0.160390365993888!4;0.312050850750647;0.115094331804079;0.162464735073906;0.410390082371368!5;0.143974706097306;0.600491735865346;0.123348444974066;0.132185113063283!6;0.0787505509789436;0.715072296499343;0.135182198816251;0.0709949537054629!7;0.146190741113154;0.685571209381871;0.0697987838749943;0.0984392656299799!8;0.137287160991388;0.646077925711715;0.126428373195834;0.0902065401010639!9;0.335099485079304;0.092260135908066;0.371509553068663;0.201130825943967!10;0.0330897683707383;0.631176315968281;0.0742775759527978;0.261456339708183!11;0.117515920775723;0.61933603047287;0.100945801616778;0.16220224713463!12;0.114768535685947;0.627362280511385;0.089838663325904;0.168030520476764!13;0.195787120472725;0.252056868434976;0.220803412375946;0.331352598716354!14;0.415354533744615;0.120731214471652;0.281372401522544;0.182541850261189!15;0.111178497182706;0.21707870954717;0.245769053622707;0.425973739647418!16;0.191516791851432;0.296951942197243;0.153369544849602;0.358161721101723
|PWM=P0;A;C;G;T!1;1233.46088405354;93.18173277811673;1036.6014857092885;1258.2948629970272!2;263.979242343185;5.314520555872139;3347.5949971525274;4.650205486388122!3;76.7700780003465;6.643150694840173;3529.4896409394937;8.636095903292224!4;57.86097393406657;18.102585643439472;3520.3342027139347;25.24120324653207!5;518.1947904009378;1545.9062946905135;22.396758181071043;1535.0411222654507!6;137.98151691820345;9.300410972776241;3456.320530770924;17.936506876068467!7;115.27647661640499;81.51802997128804;1861.9425868567278;1562.801872093553!8;227.8095486111286;42.84555258785854;3278.6396005325996;72.244263806387!9;108.73384179997886;134.47328134862394;3162.880454846513;215.45138754285665!10;238.49636899561344;2225.9561104691043;402.40727964384774;754.6792064294074
|entrez_gene_id=430
|entrez_gene_id=9314
|motif_cluster_2013_march_motif_members= /JASPAR:MA0039.2;Klf4 /SWISSREGULON:ZNF148.p2~KLF4.p3 /HOMER:KLF4_mES-Klf4-ChIP-Seq~KLF1_Erythrocyte-Klf1-ChIP-Seq /UNIPROBE:Ascl2_secondary;SCI09~Sox13_secondary;SCI09~Klf7_primary;SCI09 /HOCOMOCO:KLF1_f1~KLF4_f2~KLF3_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:KLF3_f1~KLF4_f2~KLF1_f1 /HOMER:KLF1_Erythrocyte-Klf1-ChIP-Seq~KLF4_mES-Klf4-ChIP-Seq /JASPAR:MA0039.2;Klf4 /SWISSREGULON:KLF4.p3~ZNF148.p2 /UNIPROBE:Klf7_primary;SCI09~Sox13_secondary;SCI09~Ascl2_secondary;SCI09
|name=known33
|name=non-redundant33
|representative_motif_db=UNIPROBE
|representative_motif_db=HOCOMOCO
|representative_motif_id=Ascl2_secondary
|representative_motif_id=KLF4_f2
|representative_motif_name=SCI09
|representative_motif_name=  
|score=3.3437027120298133
|score=2.54212838334891
|uniprot_entry_name=ASCL2_HUMAN
|uniprot_entry_name=KLF4_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant33
  • db :HOCOMOCO
  • Id :KLF4_f2
  • name  :
  • score :2.54212838334891
  • External refs:
EntrezGene:9314
UniProt:9314

  • Internal refs:
EntrezGene:9314


Motif matrix
P0ACGT
11233.4608840535493.181732778116731036.60148570928851258.2948629970272
2263.9792423431855.3145205558721393347.59499715252744.650205486388122
376.77007800034656.6431506948401733529.48964093949378.636095903292224
457.8609739340665718.1025856434394723520.334202713934725.24120324653207
5518.19479040093781545.906294690513522.3967581810710431535.0411222654507
6137.981516918203459.3004109727762413456.32053077092417.936506876068467
7115.2764766164049981.518029971288041861.94258685672781562.801872093553
8227.809548611128642.845552587858543278.639600532599672.244263806387
9108.73384179997886134.473281348623943162.880454846513215.45138754285665
10238.496368995613442225.9561104691043402.40727964384774754.6792064294074

Sub Motif Members

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