NonredundantMotifs:89: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM= | |PWM=PO;A;C;G;T!1;218.12758;0;907.912169;38.579205!2;0;1155.69495;0.553604;8.3704!3;0;1163.366057;0;1.252897!4;1162.484352;0;2.134602;0!5;0;0;0;1164.618954!6;51.253761;848.797314000001;132.994365;131.573514 | ||
|entrez_gene_id= | |entrez_gene_id=YY1 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0095.1;YY1 /SWISSREGULON:YY1. | |motif_cluster_2013_march_motif_members= /HOCOMOCO:TYY1_f2 /JASPAR:MA0095.1;YY1 /SWISSREGULON:YY1.p2 | ||
|name= | |name=non-redundant89 | ||
|representative_motif_db= | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id= | |representative_motif_id=YY1.p2 | ||
|representative_motif_name= | |representative_motif_name=YY1 | ||
|score=0. | |score=0.08529706897542651 | ||
|uniprot_entry_name= | |uniprot_entry_name=YY1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:47, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant89
- db :SWISSREGULON
- Id :YY1.p2
- name :YY1
- score :0.08529706897542651
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
