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Revision as of 17:23, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant51
  • db :SWISSREGULON
  • Id :GFI1.p2
  • name :GFI1
  • score :0.27937420369664345
  • External refs:
EntrezGene:GFI1
UniProt:GFI1

  • Internal refs:
EntrezGene:GFI1


Motif matrix
POACGT
137.711504545.64039268.411948131.319303
2307.79035447.44304327.8497540
3781.75310499999901.3300420
4783.083146999999000
5000783.083146999999
61.495057780.08857199999901.499518
7594.02025285.66846144.56090158.833533
855.42408471.53301196.95348959.172568
9339.399882233.5574759.343329200.782461
10118.00746388.737423550.59064625.747615

Sub Motif Members