NonredundantMotifs:33: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=430
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ZNF148.p2~KLF4.p3 /HOMER:KLF4_mES-Klf4-ChIP-Seq~KLF1_Erythrocyte-Klf1-ChIP-Seq /J...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;1233.46088405354;93.18173277811673;1036.6014857092885;1258.2948629970272!2;263.979242343185;5.314520555872139;3347.5949971525274;4.650205486388122!3;76.7700780003465;6.643150694840173;3529.4896409394937;8.636095903292224!4;57.86097393406657;18.102585643439472;3520.3342027139347;25.24120324653207!5;518.1947904009378;1545.9062946905135;22.396758181071043;1535.0411222654507!6;137.98151691820345;9.300410972776241;3456.320530770924;17.936506876068467!7;115.27647661640499;81.51802997128804;1861.9425868567278;1562.801872093553!8;227.8095486111286;42.84555258785854;3278.6396005325996;72.244263806387!9;108.73384179997886;134.47328134862394;3162.880454846513;215.45138754285665!10;238.49636899561344;2225.9561104691043;402.40727964384774;754.6792064294074 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=9314 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:KLF3_f1~KLF4_f2~KLF1_f1 /HOMER:KLF1_Erythrocyte-Klf1-ChIP-Seq~KLF4_mES-Klf4-ChIP-Seq /JASPAR:MA0039.2;Klf4 /SWISSREGULON:KLF4.p3~ZNF148.p2 /UNIPROBE:Klf7_primary;SCI09~Sox13_secondary;SCI09~Ascl2_secondary;SCI09 | ||
|representative_motif_db= | |name=non-redundant33 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_name= | |representative_motif_id=KLF4_f2 | ||
|score= | |representative_motif_name= | ||
|uniprot_entry_name= | |score=2.54212838334891 | ||
|uniprot_entry_name=KLF4_HUMAN | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant33
- db :HOCOMOCO
- Id :KLF4_f2
- name :
- score :2.54212838334891
- External refs:
- Internal refs:
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Sub Motif Members
