NonredundantMotifs:51: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GFI1.p2~GFI1B.p2 /HOMER:GFI1B_HPC7-Gfi1b-ChIP-Seq /JASPAR:MA0038.1;Gfi /HOCOMOCO:GF...") |
m (Autoedit moved page NonredundantMotifs:Motif51 to NonredundantMotifs:51 without leaving a redirect: NSchange) |
||
| (6 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;37.711504;545.640392;68.411948;131.319303!2;307.79035;447.443043;27.849754;0!3;781.753104999999;0;1.330042;0!4;783.083146999999;0;0;0!5;0;0;0;783.083146999999!6;1.495057;780.088571999999;0;1.499518!7;594.020252;85.668461;44.560901;58.833533!8;55.42408;471.53301;196.953489;59.172568!9;339.399882;233.557475;9.343329;200.782461!10;118.007463;88.737423;550.590646;25.747615 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=GFI1 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:GFI1_f1~GFI1B_f1 /HOMER:GFI1B_HPC7-Gfi1b-ChIP-Seq /JASPAR:MA0038.1;Gfi /SWISSREGULON:GFI1.p2~GFI1B.p2 /UNIPROBE:Hdx_3845.3;CELL08 | ||
|name=non-redundant51 | |||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=GFI1.p2 | |representative_motif_id=GFI1.p2 | ||
|representative_motif_name= | |representative_motif_name=GFI1 | ||
|score=0.27937420369664345 | |score=0.27937420369664345 | ||
|uniprot_entry_name= | |uniprot_entry_name=GFI1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant51
- db :SWISSREGULON
- Id :GFI1.p2
- name :GFI1
- score :0.27937420369664345
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
