NonredundantMotifs:55: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
m (Autoedit moved page NonredundantMotifs:Motif55 to NonredundantMotifs:55 without leaving a redirect: NSchange) |
||
| (5 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.174039591746383;0.367917808376691;0.270176288061016;0.18786631181591!2;0.359560309475115;0.309872175539918;0.111047091794689;0.219520423190278!3;0.0944683036866483;0.790352458904872;0.0260338276643511;0.0891454097441286!4;0.114860285151229;0.779490252302552;0.0508946340643847;0.0547548284818338!5;0.105194978758313;0.837711636099516;0.0318568613529546;0.0252365237892168!6;0.0452340382891032;0.825038720993972;0.0739899787188562;0.0557372619980684!7;0.145554738614157;0.592986406651292;0.228414503273096;0.0330443514614552!8;0.045273191233523;0.175000890728307;0.607614869174327;0.172111048863843!9;0.0557372619980684;0.0739899787188562;0.825038720993972;0.0452340382891032!10;0.0252365237892168;0.0318568613529545;0.837711636099516;0.105194978758313!11;0.0547548284818338;0.0508946340643847;0.779490252302552;0.114860285151229!12;0.0891454097441286;0.0260338276643511;0.790352458904872;0.0944683036866483!13;0.0608325786474077;0.0677871868953474;0.717352267276858;0.154027967180387!14;0.0977422772443525;0.194545217643926;0.591608125508604;0.116104379603117 | |||
|entrez_gene_id=7545 | |entrez_gene_id=7545 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0116.1;Zfp423 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN423_f1 /JASPAR:MA0116.1;Zfp423 /SWISSREGULON:ZNF423.p2 /UNIPROBE:Zic3_primary;SCI09~Zic2_primary;SCI09~Zic1_primary;SCI09 | ||
|name= | |name=non-redundant55 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
|representative_motif_id=Zic1_primary | |representative_motif_id=Zic1_primary | ||
| Line 11: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant55
- db :UNIPROBE
- Id :Zic1_primary
- name :SCI09
- score :1.9305460342991163
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
