NonredundantMotifs:58: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=190
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MZF1.p2 /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /HOCOMOCO:NR0B1_si~MZF1_f1 ...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;74.346881;23.638278;531.934131;115.189099!2;104.040042;30.259929;567.387683999999;43.420734!3;141.755287;11.718362;563.878756;27.755984!4;69.91805;86.603206;462.436507;126.150626!5;2.235757;3.683027;657.349422;81.840183!6;680.677063;5.842726;58.5886;0!7;26.894046;0.909082;672.861502;44.443759!8;0.862777;1.374751;739.057741;3.81312!9;46.095866;3.718199;689.606587;5.687737!10;31.262764;0;696.658737;17.186888!11;178.855473;132.650259;419.013691;14.588966!12;561.209931;4.967734;130.390074;48.54065!13;461.840303;76.932362;195.744125;10.591599 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=MZF1 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:NR0B1_si~MZF1_f1 /JASPAR:MA0056.1;MZF1_1-4~MA0057.1;MZF1_5-13 /SWISSREGULON:MZF1.p2 /UNIPROBE:Egr1_secondary;SCI09 | ||
|representative_motif_db= | |name=non-redundant58 | ||
|representative_motif_id= | |representative_motif_db=SWISSREGULON | ||
|representative_motif_name= | |representative_motif_id=MZF1.p2 | ||
|score= | |representative_motif_name=MZF1 | ||
|uniprot_entry_name= | |score=2.5260751625869733 | ||
|uniprot_entry_name=MZF1 | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant58
- db :SWISSREGULON
- Id :MZF1.p2
- name :MZF1
- score :2.5260751625869733
- External refs:
- Internal refs:
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Sub Motif Members
