NonredundantMotifs:87: Difference between revisions
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|motif_cluster_2013_march_motif_members= /JASPAR:MA0161.1;NFIC /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_si /UNIPROBE:Hic1_primary;SCI09
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;66.07893715391491;104.60866309647001;42.55557940401112;51.756820345603956!2;15.362627600154255;45.543123976791335;2.3556028986903192;201.73864552436441!3;1.9459328293528724;0.7169226213405314;13.92878235747319;248.4083621918338!4;3.482195589368311;0.0;255.2703358532359;6.247468557396064!5;7.6813138000771275;3.379778072033938;253.4268205412176;0.5120875866718093!6;14.031199874807564;234.63320611036193;12.392519597457754;3.9430744173729364!7;118.27323385135733;33.34617065316858;37.25657383354188;76.12402166193222 | ||
|motif_cluster_2013_march_motif_members= | |entrez_gene_id=4774,4781,4782,4784 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_si /JASPAR:MA0161.1;NFIC /UNIPROBE:Hic1_primary;SCI09 | ||
|representative_motif_db= | |name=non-redundant87 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_name= | |representative_motif_id=NFIA+NFIB+NFIC+NFIX_si | ||
|score=0. | |representative_motif_name= | ||
|uniprot_entry_name= | |score=0.04531406897134382 | ||
|uniprot_entry_name=NFIA_HUMAN,NFIB_HUMAN,NFIC_HUMAN,NFIX_HUMAN | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant87
- db :HOCOMOCO
- Id :NFIA+NFIB+NFIC+NFIX_si
- name :
- score :0.04531406897134382
- External refs:
- Internal refs:
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Sub Motif Members
